mRNA_M-pyrifera_M_contig87809.20401.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87809.20401.1
Unique NamemRNA_M-pyrifera_M_contig87809.20401.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A2D9CIX2_9BACT (Uncharacterized protein n=4 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CIX2_9BACT)

HSP 1 Score: 402 bits (1034), Expect = 1.150e-136
Identity = 191/273 (69.96%), Postives = 221/273 (80.95%), Query Frame = 1
Query:    1 ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMN 819
            ISNSFPPY++  DMIFFGNGAGIN TPGW+S+ +THTGDVQ+GDL+GD   DIV+IHGGLRRDSVR YF   +GM TAP YTS+T  T WGT+G+L DMDQDGDLDLVTTNQGVSP+PYRP+LMFDNLG TLTT SVWQSD+E++QNGLDARDITGDGYPDLAVAKWVNF SG+Y NT+GT +   +    + D DRGA F DL +D + EIAFG DP+ VY Y  G+    Y ++PPF+GPQEI F DVD DGDED  EIHFSDGR HIY+N
Sbjct:   88 ISNSFPPYDNAQDMIFFGNGAGINLTPGWLSNEDTHTGDVQVGDLDGDDRPDIVTIHGGLRRDSVRAYFNTGAGMSTAPGYTSNTARTMWGTAGVLADMDQDGDLDLVTTNQGVSPDPYRPLLMFDNLGTTLTTGSVWQSDDEAVQNGLDARDITGDGYPDLAVAKWVNFHSGLYTNTTGTPNTLPADAVSSDDSDRGALFCDLDNDGVSEIAFGGDPSRVYDYAAGSFTERYASNPPFAGPQEIGFFDVDGDGDEDFIEIHFSDGRGHIYLN 360          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A3M2CPA7_9BACT (VCBS repeat-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CPA7_9BACT)

HSP 1 Score: 394 bits (1011), Expect = 4.560e-133
Identity = 187/276 (67.75%), Postives = 219/276 (79.35%), Query Frame = 1
Query:    1 ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGG-LRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNND 825
            ISNSFPPYE W DMIFFG GAGI TTPGW+S VETHTGDVQ+GD+NGDG +DIV+IHGG LRRDSVR YFG  SG    P Y S+T  T+WGTSG+L DMDQDGDLDLVTTNQG+SP+P+RPMLMFDN G TLT+A+VWQS E+SIQNG+DARD+TG+GYPDLAVAKWVNF+SG+Y N +GT D+  S     T  D+GAAF+D+  D   E+ FG D T  Y+   G +  FY+ +PPFSGPQ+I   DVD DGDEDL EI+FSDGRAHIY+N D
Sbjct:   93 ISNSFPPYEQWDDMIFFGTGAGIQTTPGWLSSVETHTGDVQVGDINGDGNLDIVTIHGGGLRRDSVRVYFGTGSGPSVTPGYVSNTAATSWGTSGVLADMDQDGDLDLVTTNQGLSPDPFRPMLMFDNTGTTLTSAAVWQSAEQSIQNGIDARDVTGEGYPDLAVAKWVNFRSGLYLNQTGTPDVDPSETVDTTGADKGAAFSDIDGDGFQEVVFGGDNTKAYEIGFGVLTPFYEANPPFSGPQDIRMFDVDGDGDEDLGEIYFSDGRAHIYINRD 368          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A812Y441_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y441_9DINO)

HSP 1 Score: 345 bits (886), Expect = 9.580e-113
Identity = 164/276 (59.42%), Postives = 204/276 (73.91%), Query Frame = 1
Query:    4 SNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGA-SSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVS-PNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNND 825
            +++FPPY+DWHDMIF+ + +G+ TTP W SD +THTGDVQ+GD+NGDG+MD+V IHGG+R D+V  +FG    G+ T  S+TS+T    WGTSG L DMD DGDLDLVTTNQG+   +P RPM MF N G  L T   W+S    I NGLD RDITGDG+P++AVAKWVN+ SGVY+NT+GT D  Q LF   +D D+GAAF DL +D +PE  FG DP+ VY   HGA+     T+PPF+GPQE++F DVD DGD+D  EIHFSDGRAHIY+N D
Sbjct:  205 TSAFPPYDDWHDMIFYNSESGLETTPSWTSDEQTHTGDVQVGDINGDGFMDVVGIHGGVRTDNVSIHFGLPGGGVETTASWTSNTSPNAWGTSGKLADMDNDGDLDLVTTNQGLGVSSPTRPMFMFRNDGTGLETDPSWESAASEISNGLDTRDITGDGFPEIAVAKWVNYFSGVYYNTNGTPDTNQGLFAFGSDTDKGAAFTDLENDGVPEFGFGGDPSTVYTTFHGAVFEVSTTNPPFTGPQEVHFFDVDLDGDDDFGEIHFSDGRAHIYLNRD 480          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A7C5SHY7_9BACT (VCBS repeat-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5SHY7_9BACT)

HSP 1 Score: 323 bits (829), Expect = 1.340e-105
Identity = 156/276 (56.52%), Postives = 195/276 (70.65%), Query Frame = 1
Query:    1 ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGG-LRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITG-DGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNN 822
            IS+SFPPYEDWHDMIF+ +  G+ TTPGW+SD ETHTGDVQIGD+NGDG  D+V++HGG +R D+V+ YFGA +G  T+P Y+S+     WGTSG +VD+D DGDLDLVTTNQ ++P+PYRP+++F N G  L  A  W+S  + I NG+   DI G DG P++  AKWVNF SGVY N  GT D F  +   N   D+GAA  D+  D IPE+AFG DP  VY  V GA++  +  DPPF G QEI   D D DGD D+AE+ FSDG+AHIY NN
Sbjct:   89 ISSSFPPYEDWHDMIFYNSPNGLGTTPGWLSDNETHTGDVQIGDINGDGLPDLVAVHGGSVRADAVQVYFGAGNGPSTSPGYSSNIPGRAWGTSGAIVDIDLDGDLDLVTTNQAIAPDPYRPIMLFRNNGTGLGAAPDWESGADEISNGVVTADILGSDGLPEVITAKWVNFNSGVYENIGGTPDAFPIMAVANDSADKGAAVGDINGDGIPEVAFGGDPMVVYSMVQGALVPLWTADPPFGGSQEIRMHDADGDGDLDMAEVVFSDGKAHIYQNN 364          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A6M8W038_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8W038_9BACT)

HSP 1 Score: 281 bits (719), Expect = 5.840e-89
Identity = 137/276 (49.64%), Postives = 181/276 (65.58%), Query Frame = 1
Query:    4 SNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNT-SGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTG-VYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNND 825
            SNSFPPY+DWHD I +  G  +   P WI+  +TH GDV IGD+N D + D  S+ G    + +R YFG+++G  T   +      + W TSGLLVD+D DGDLD+VTTNQGV+P+PYRPM M+ N   TL     WQS E+SIQNGLDA D+ GDG+PD+ VAKWVNF+SG+Y NT +G+L+      TG+   D+G AF+D+  +  P+   G D  G VY    GA    Y++D PF G QE+ F D+D DGD+D  E++FSDGR H+Y+N D
Sbjct:  100 SNSFPPYDDWHDFILYNTGTQLEAAPSWIAADQTHCGDVHIGDINLDTYPDFFSVSGSF--NDIRVYFGSATGPSTTAGWFGTPPRSGWATSGLLVDIDNDGDLDIVTTNQGVTPDPYRPMYMWKNQSGTLDNTVSWQSAEQSIQNGLDAADVNGDGWPDVGVAKWVNFESGIYLNTGAGSLEATPYWTTGDDGTDKGVAFSDIDGNGWPDYGLGHDEPGRVYANDAGAFSLVYESDAPFYGQQEVAFHDIDRDGDDDFCEVNFSDGRTHLYLNRD 373          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A7C3PC25_9BACT (VCBS repeat-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3PC25_9BACT)

HSP 1 Score: 256 bits (653), Expect = 5.410e-79
Identity = 131/277 (47.29%), Postives = 166/277 (59.93%), Query Frame = 1
Query:    1 ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFG----EDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMN 819
            IS SFPPY DW DMIF+  G+ +  TPGWIS  E HTGD Q+GD+NGD  +D+ ++ GG      R YFG   G+ T   + S    + W TS  L D D DGDLD+VTTNQG+ PNP+RPM  F N    L T+ VW S E SIQN     D  GD  PD+AVAKW N+ SGVY  T GT D   + +T  T  +RG A+AD+  +  P++  G     + T +Y    G +   +   P F+GPQE  F DVD DGD D AE+HFS+G+ HIY+N
Sbjct:   96 ISQSFPPYTDWEDMIFYNTGSTLQATPGWISADEVHTGDAQLGDINGDSRLDVFAVSGGTAFTPPRIYFGIGGGVSTTAGWISTPPMSGWATSATLFDADDDGDLDVVTTNQGIDPNPFRPMYFFRNNAGALGTSPVWSSAESSIQNTTAVADYDGDKDPDIAVAKWANWVSGVYEITGGTPDAAPT-WTSGTGTNRGVAWADVDGNGWPDLVIGGSGSTNLTKLYSNTAGVLTHTWTATPAFTGPQENTFEDVDQDGDPDFAEVHFSNGQTHIYLN 371          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A5M4D5V4_9CYAN (VCBS repeat-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D5V4_9CYAN)

HSP 1 Score: 253 bits (645), Expect = 9.950e-78
Identity = 125/273 (45.79%), Postives = 162/273 (59.34%), Query Frame = 1
Query:    4 SNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNN 822
            S S+PPY DWHDMIF+  G+GI TTP W+S  + HTGDVQIG++NGDG +D+V++HG +   S R Y+G++SG  T+  +T+      WGT+G L D+D DGDLDL+T+NQGVSP+PY+P  MF N   T TTA  WQS + ++QNG+   D   DG+ D+A+ KWVNFQSG+YF                                      G DP+  Y    G     +    P SG QEI   DVD DGD DLAEIHFS G+ +IY+NN
Sbjct:  112 SQSYPPYTDWHDMIFYNTGSGIETTPSWLSVEQVHTGDVQIGEINGDGHLDVVTVHGNVSSQSARVYYGSASGPATSAGWTA-AGPAVWGTAGGLADIDNDGDLDLITSNQGVSPDPYKPNFMFRNNAGTFTTAPAWQSGDLAVQNGVATGDFNNDGWTDVAIGKWVNFQSGIYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDPSRAYTQDDGVFTEAWANTDPLSGAQEIRTHDVDSDGDLDLAEIHFSTGKCYIYLNN 383          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A847I6S5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A847I6S5_9BACT)

HSP 1 Score: 240 bits (612), Expect = 6.880e-73
Identity = 125/274 (45.62%), Postives = 170/274 (62.04%), Query Frame = 1
Query:    4 SNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVN-FQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNN 822
            S S+PPY DW ++I+F  G  +   P WIS  E HT DV +GDLNGDG+ DI S +GG      R Y+G+++G  T P +T+     +W T+  L D+D D DLD++TTNQGVSP P+RPM MF N G+   ++  WQS EESIQ+ + A D   DG+ D+AV+KW N F+SG+Y N  G+L       TG +D D+G A+AD+  +   ++A G DPT +Y    GA+   +       G Q++ F DVD DG  DLAEIHFS+G+  IY NN
Sbjct:   92 SQSYPPYPDWENLIYFNVGGELEAEPSWISSDEVHTNDVAVGDLNGDGFPDIFSANGGSAFSPSRIYWGSATGPSTTPGWTATLPMASWATAVALFDVDNDEDLDVMTTNQGVSPLPFRPMYMFYNNGSGPASSPGWQSAEESIQSAVAAGDYNNDGWIDIAVSKWSNGFESGIYHNAGGSLQTTPIWTTGVSDTDKGVAWADVDGNEWLDLALGHDPTRLYSNTGGALSLTWSAVGTHFGHQDLKFCDVDRDGWPDLAEIHFSNGKVQIYRNN 365          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A5C5W412_9BACT (FG-GAP repeat protein n=1 Tax=Phycisphaerae bacterium RAS1 TaxID=2528034 RepID=A0A5C5W412_9BACT)

HSP 1 Score: 231 bits (588), Expect = 2.480e-69
Identity = 120/274 (43.80%), Postives = 153/274 (55.84%), Query Frame = 1
Query:    1 ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNN 822
            IS SFPPY DW + I++  G      P W S VE HTGD+Q+GD+N D + DIVS+ GG     V  ++GA++G  T P + S      W TSGLL D+D D DLDL+TTNQG+ PNPYRP+  F N    L T   WQS E SIQN   A D  GDG+ D+AVAKWVNFQS +Y                                  P++  G  PT ++    GA+   + +   F G QEI F DVD DGD+D AE++FS+G+ HIY+NN
Sbjct:   91 ISQSFPPYTDWENYIYYNVGGTPEANPSWTSSVERHTGDLQVGDVNLDTYPDIVSVDGGSSFSPVIMFYGAAAGPDTVPDWQSTPPIAGWATSGLLFDIDHDNDLDLLTTNQGLDPNPYRPIYFFRNNAGALETTPSWQSAESSIQNTAAAADYDGDGWLDVAVAKWVNFQSAIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPDLMIGSSPTALWSNDDGALSVTWTSGATFFGQQEIAFCDVDRDGDQDYAEVNFSNGQTHIYLNN 364          
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Match: A0A3M2BQM8_9BACT (VCBS repeat-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BQM8_9BACT)

HSP 1 Score: 219 bits (559), Expect = 2.200e-66
Identity = 114/245 (46.53%), Postives = 144/245 (58.78%), Query Frame = 1
Query:   88 ISDVETHTGDVQIGDLNGDGWMDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMDQDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLDARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAAFADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDVDDDGDEDLAEIHFSDGRAHIYMNN 822
            +S  + HTGDVQ+GDLNGD ++D+V+IHGG+   SVR Y+G +SG  T   + S T    WGT+G L D+D DGDLDLVT+NQGVSP+PYRP  MF N    LT+A VW S +  +QNG+   D   DG+ D+A+AKWVNF+SG+Y+                                    AFG DP+  Y   +G     +    PFSG QEI   DVD DGD D+AEIHFS GR HIY+NN
Sbjct:    8 VSTEQVHTGDVQVGDLNGDSFLDVVTIHGGVSSQSVRVYYGTASGPATTAGWVSATPVAAWGTAGGLGDIDGDGDLDLVTSNQGVSPDPYRPNFMFRNNAGVLTSAPVWTSADAGVQNGVAIGDFNNDGWADVAIAKWVNFESGIYYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGGDPSRAYGQDNGVFTQIWANTDPFSGAQEIRTHDVDHDGDLDIAEIHFSTGRCHIYLNN 252          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87809.20401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CIX2_9BACT1.150e-13669.96Uncharacterized protein n=4 Tax=Phycisphaerae TaxI... [more]
A0A3M2CPA7_9BACT4.560e-13367.75VCBS repeat-containing protein n=1 Tax=Planctomyce... [more]
A0A812Y441_9DINO9.580e-11359.42Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7C5SHY7_9BACT1.340e-10556.52VCBS repeat-containing protein n=1 Tax=Phycisphaer... [more]
A0A6M8W038_9BACT5.840e-8949.64Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C3PC25_9BACT5.410e-7947.29VCBS repeat-containing protein n=1 Tax=Phycisphaer... [more]
A0A5M4D5V4_9CYAN9.950e-7845.79VCBS repeat-containing protein n=1 Tax=Cyanobacter... [more]
A0A847I6S5_9BACT6.880e-7345.62Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A5C5W412_9BACT2.480e-6943.80FG-GAP repeat protein n=1 Tax=Phycisphaerae bacter... [more]
A0A3M2BQM8_9BACT2.200e-6646.53VCBS repeat-containing protein n=1 Tax=Planctomyce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87809contigM-pyrifera_M_contig87809:2..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog1254432.SCE1572_16370
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs1PHGN@1224,2A79N@1,2WUWJ@28221,30W69@2,42ZJ6@68525
COG Functional cat.S
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size825
Cds size825
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.5442598-CDS-M-pyrifera_M_contig87809:1..8261622816787.5442598-CDS-M-pyrifera_M_contig87809:1..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87809 2..826 -
1692278178.4958363-CDS-M-pyrifera_M_contig87809:1..8261692278178.4958363-CDS-M-pyrifera_M_contig87809:1..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87809 2..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87809.20401.1prot_M-pyrifera_M_contig87809.20401.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87809 2..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87809.20401.1

>prot_M-pyrifera_M_contig87809.20401.1 ID=prot_M-pyrifera_M_contig87809.20401.1|Name=mRNA_M-pyrifera_M_contig87809.20401.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp
ISNSFPPYEDWHDMIFFGNGAGINTTPGWISDVETHTGDVQIGDLNGDGW
MDIVSIHGGLRRDSVRGYFGASSGMPTAPSYTSDTIDTNWGTSGLLVDMD
QDGDLDLVTTNQGVSPNPYRPMLMFDNLGATLTTASVWQSDEESIQNGLD
ARDITGDGYPDLAVAKWVNFQSGVYFNTSGTLDIFQSLFTGNTDGDRGAA
FADLGDDSIPEIAFGEDPTGVYQYVHGAILGFYQTDPPFSGPQEIYFVDV
DDDGDEDLAEIHFSDGRAHIYMNND
back to top

mRNA from alignment at M-pyrifera_M_contig87809:2..826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87809.20401.1 ID=mRNA_M-pyrifera_M_contig87809.20401.1|Name=mRNA_M-pyrifera_M_contig87809.20401.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=825bp|location=Sequence derived from alignment at M-pyrifera_M_contig87809:2..826- (Macrocystis pyrifera P11B4 male)
ATCTCCAATAGTTTTCCGCCGTACGAAGATTGGCACGACATGATCTTCTT CGGCAATGGCGCCGGTATCAATACAACGCCGGGCTGGATCTCGGATGTCG AAACACACACAGGGGATGTGCAGATCGGCGATCTCAACGGCGACGGATGG ATGGACATCGTGTCGATCCACGGCGGTCTGCGGCGGGATAGCGTGCGGGG ATACTTCGGCGCATCTAGCGGGATGCCGACAGCGCCGAGCTATACATCAG ACACGATTGATACGAACTGGGGCACTTCGGGTCTGCTCGTGGATATGGAT CAGGACGGGGATCTGGATCTCGTGACGACAAATCAGGGGGTGTCTCCGAA TCCGTATCGTCCGATGCTGATGTTTGACAATCTCGGCGCGACGCTGACGA CTGCATCTGTGTGGCAGAGCGACGAGGAGTCGATCCAGAATGGACTCGAC GCTCGCGATATCACAGGGGACGGCTATCCAGATCTCGCAGTTGCGAAATG GGTGAACTTCCAGAGCGGCGTGTACTTCAACACAAGCGGGACCCTGGATA TTTTTCAGTCGCTCTTTACTGGGAACACTGACGGGGATCGGGGAGCAGCG TTCGCAGATCTCGGGGATGATTCCATTCCAGAGATCGCTTTCGGCGAAGA CCCGACAGGGGTGTATCAGTATGTGCACGGCGCGATTCTGGGGTTCTATC AGACGGATCCGCCGTTCAGCGGGCCGCAGGAGATCTACTTCGTTGATGTC GATGACGATGGGGACGAGGATCTCGCGGAGATCCACTTCTCCGACGGTCG TGCGCATATCTACATGAACAATGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87809:2..826-

>mRNA_M-pyrifera_M_contig87809.20401.1 ID=mRNA_M-pyrifera_M_contig87809.20401.1|Name=mRNA_M-pyrifera_M_contig87809.20401.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig87809:2..826- (Macrocystis pyrifera P11B4 male)
ATCTCCAATAGTTTTCCGCCGTACGAAGATTGGCACGACATGATCTTCTT
CGGCAATGGCGCCGGTATCAATACAACGCCGGGCTGGATCTCGGATGTCG
AAACACACACAGGGGATGTGCAGATCGGCGATCTCAACGGCGACGGATGG
ATGGACATCGTGTCGATCCACGGCGGTCTGCGGCGGGATAGCGTGCGGGG
ATACTTCGGCGCATCTAGCGGGATGCCGACAGCGCCGAGCTATACATCAG
ACACGATTGATACGAACTGGGGCACTTCGGGTCTGCTCGTGGATATGGAT
CAGGACGGGGATCTGGATCTCGTGACGACAAATCAGGGGGTGTCTCCGAA
TCCGTATCGTCCGATGCTGATGTTTGACAATCTCGGCGCGACGCTGACGA
CTGCATCTGTGTGGCAGAGCGACGAGGAGTCGATCCAGAATGGACTCGAC
GCTCGCGATATCACAGGGGACGGCTATCCAGATCTCGCAGTTGCGAAATG
GGTGAACTTCCAGAGCGGCGTGTACTTCAACACAAGCGGGACCCTGGATA
TTTTTCAGTCGCTCTTTACTGGGAACACTGACGGGGATCGGGGAGCAGCG
TTCGCAGATCTCGGGGATGATTCCATTCCAGAGATCGCTTTCGGCGAAGA
CCCGACAGGGGTGTATCAGTATGTGCACGGCGCGATTCTGGGGTTCTATC
AGACGGATCCGCCGTTCAGCGGGCCGCAGGAGATCTACTTCGTTGATGTC
GATGACGATGGGGACGAGGATCTCGCGGAGATCCACTTCTCCGACGGTCG
TGCGCATATCTACATGAACAATGACATCTCCAATAGTTTTCCGCCGTACG
AAGATTGGCACGACATGATCTTCTTCGGCAATGGCGCCGGTATCAATACA
ACGCCGGGCTGGATCTCGGATGTCGAAACACACACAGGGGATGTGCAGAT
CGGCGATCTCAACGGCGACGGATGGATGGACATCGTGTCGATCCACGGCG
GTCTGCGGCGGGATAGCGTGCGGGGATACTTCGGCGCATCTAGCGGGATG
CCGACAGCGCCGAGCTATACATCAGACACGATTGATACGAACTGGGGCAC
TTCGGGTCTGCTCGTGGATATGGATCAGGACGGGGATCTGGATCTCGTGA
CGACAAATCAGGGGGTGTCTCCGAATCCGTATCGTCCGATGCTGATGTTT
GACAATCTCGGCGCGACGCTGACGACTGCATCTGTGTGGCAGAGCGACGA
GGAGTCGATCCAGAATGGACTCGACGCTCGCGATATCACAGGGGACGGCT
ATCCAGATCTCGCAGTTGCGAAATGGGTGAACTTCCAGAGCGGCGTGTAC
TTCAACACAAGCGGGACCCTGGATATTTTTCAGTCGCTCTTTACTGGGAA
CACTGACGGGGATCGGGGAGCAGCGTTCGCAGATCTCGGGGATGATTCCA
TTCCAGAGATCGCTTTCGGCGAAGACCCGACAGGGGTGTATCAGTATGTG
CACGGCGCGATTCTGGGGTTCTATCAGACGGATCCGCCGTTCAGCGGGCC
GCAGGAGATCTACTTCGTTGATGTCGATGACGATGGGGACGAGGATCTCG
CGGAGATCCACTTCTCCGACGGTCGTGCGCATATCTACATGAACAATGAC
back to top