mRNA_M-pyrifera_M_contig87746.20389.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87746.20389.1
Unique NamemRNA_M-pyrifera_M_contig87746.20389.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.160e-39
Identity = 76/136 (55.88%), Postives = 100/136 (73.53%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y   T+L W+R+FR   G  KRD RG+HER+WIM EEDL  +L+KW+++ KR++VK V+ YIN  L A E G +  L  Y ++LP+S +TTHSWMI +GCKY+RA +SFYTD HE+KDVV  RG Y+  KR+LALR
Sbjct:  206 YAASTILGWLRDFRG-HGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 340
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BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.820e-38
Identity = 75/136 (55.15%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y   T+L W+R+FR   G  K D RG+HER+WIM EEDL  +L+KW++  KR++VK V+ YIN  L A E G +  L  Y ++LP+S +TTHSWMI +GCKY+RA +SFYTD HE+KDVV  RG Y+  KR+LALR
Sbjct:  128 YAASTILGWLRDFRG-HGGFKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 262
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BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.030e-38
Identity = 75/136 (55.15%), Postives = 99/136 (72.79%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y   T+L W+R+FR   G  KRD RG+HER+WIM EEDL  +L+ W+++ KR++VK V+ YIN  L A E G +  L  Y ++LP+S +TTHSWMI +GCKY+RA +SFYTD HE+KDVV  RG Y+  KR+LALR
Sbjct:  268 YAASTILGWLRDFRGHGGS-KRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.500e-37
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLAL 405
            Y   T+L W+R+FR   G  KRD RG+HER+WIM EED   +L+KW+++ KR++VK V+ YIN  L A + G +  L  Y ++LP+S +TTHSWMI +GCKY+RA +SFYTD HE+KDVV  RG Y+  KR+LAL
Sbjct:  383 YAASTILGWLRDFRG-HGGFKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLAL 516
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.400e-37
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLAREG-GMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y P T+L+W+R+FRK +G  +RD RG HE +WIM EEDL   LL W+ S  R ++K V +YIN  LL  +   +  L  Y ++LP+S STTHSWMI++GC+Y+RA +SFYTD HE+K+VVE RG Y+ ++R++ALR
Sbjct:  314 YAPSTILRWLRDFRK-EGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALR 448
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BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.640e-37
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLA--REGGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y P T+L+W+R+FRK +G  +RD RG HE +WIM EEDL   LL W+ S  R ++K+V +YIN  LL   +E  +  L  Y ++LP+S ST HSWMI++GC+Y+R  +SFYTD HE+K+VVE RG Y+ ++R++ALR
Sbjct:  267 YAPSTILRWLRDFRK-EGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDDKEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALR 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.070e-36
Identity = 72/136 (52.94%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            Y   T+L W+R+FR   G  KRD R +HER+WIM +EDL  +L+KW+++ KR++VK V+ YIN  L A E G +  L  + ++LP+S  TTHSW+I +GCKY+RA +SFYTD HE+KDVV  RG Y+  KR+LALR
Sbjct:  226 YAASTVLGWLRDFRG-HGGFKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.500e-35
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1 
Query:   55 GHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR 408
            G  KRD RG+H R+WIM EEDL  +L+KW+++ KR++VK V+ YIN  L A E G +  L  Y ++LP+S STTHSWMI +GCKY++A +SFYTD HE K VV  RG Y+  KR+LALR
Sbjct:   56 GGFKRDSRGVHRRDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFASEIGDLSTLLSYQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDVKRKLALR 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.860e-35
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLARE-GGMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKDVVENRG 372
            Y   T+L W+R+FR   G  KRD RG+HER+WIM EEDL  +L+KW+++ KR++VK V+ YIN  L A E G +  L  Y ++LP+S +TTHSWMI +GCKY+RA +SFYTD HE+KDVV  RG
Sbjct:  317 YAASTILGWLRDFRG-HGGFKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRG 439
[Close]
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Match: A0A6H5L6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.880e-31
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    4 YKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKSLKRVSVKKVREYINNVLLAREG-GMEALDKYGLSLPISTSTTHSWMIKIGCKYDRAHQSFYTDAHERKD 354
            Y P T+L+W+R+FRK +G  +RD RG HE +WIM EEDL  KLL W+    RV+VK V +YIN  LL  +   +  L  Y ++LP+S STTH WMI++GCKY+RA +SFYTD+HE+K+
Sbjct:  225 YAPSTILRWLRDFRK-EGGFRRDARGAHETDWIMSEEDLKGKLLAWMIPQPRVTVKDVCKYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHPWMIRLGCKYERATKSFYTDSHEKKE 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87746.20389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5J4M4_9PHAE6.160e-3955.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRV8_9PHAE2.820e-3855.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE4.030e-3855.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE2.500e-3754.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE3.400e-3752.21Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE4.640e-3751.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI16_9PHAE4.070e-3652.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE2.500e-3556.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE4.860e-3555.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Y6_9PHAE4.880e-3153.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87746contigM-pyrifera_M_contig87746:316..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.0535417-CDS-M-pyrifera_M_contig87746:315..7231622816787.0535417-CDS-M-pyrifera_M_contig87746:315..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87746 316..723 -
1692278178.267476-CDS-M-pyrifera_M_contig87746:315..7231692278178.267476-CDS-M-pyrifera_M_contig87746:315..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87746 316..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87746.20389.1prot_M-pyrifera_M_contig87746.20389.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87746 316..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87746.20389.1

>prot_M-pyrifera_M_contig87746.20389.1 ID=prot_M-pyrifera_M_contig87746.20389.1|Name=mRNA_M-pyrifera_M_contig87746.20389.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
TYKPRTLLQWVREFRKLDGHLKRDGRGLHERNWIMFEEDLLLKLLKWLKS
LKRVSVKKVREYINNVLLAREGGMEALDKYGLSLPISTSTTHSWMIKIGC
KYDRAHQSFYTDAHERKDVVENRGCYVREKRRLALR
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mRNA from alignment at M-pyrifera_M_contig87746:316..723-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87746.20389.1 ID=mRNA_M-pyrifera_M_contig87746.20389.1|Name=mRNA_M-pyrifera_M_contig87746.20389.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig87746:316..723- (Macrocystis pyrifera P11B4 male)
ACGTACAAGCCGAGGACGCTACTCCAGTGGGTTCGCGAGTTTCGAAAACT
CGACGGTCATCTGAAGCGTGACGGCCGAGGTTTACACGAGAGGAATTGGA
TTATGTTCGAGGAAGACTTGCTGCTTAAGCTGTTGAAGTGGCTGAAGAGC
CTGAAGCGAGTCTCGGTCAAAAAGGTTCGCGAGTACATCAACAACGTGCT
GCTCGCGAGGGAAGGAGGGATGGAGGCGTTGGATAAGTACGGCCTGAGTT
TGCCCATCTCTACGTCCACGACCCACTCGTGGATGATCAAAATCGGCTGC
AAATACGACCGCGCGCACCAGTCGTTCTACACGGATGCACACGAGAGGAA
GGATGTCGTGGAAAACCGCGGGTGCTACGTGAGGGAGAAGCGCCGGTTGG
CCCTGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87746:316..723-

>mRNA_M-pyrifera_M_contig87746.20389.1 ID=mRNA_M-pyrifera_M_contig87746.20389.1|Name=mRNA_M-pyrifera_M_contig87746.20389.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig87746:316..723- (Macrocystis pyrifera P11B4 male)
ACGTACAAGCCGAGGACGCTACTCCAGTGGGTTCGCGAGTTTCGAAAACT
CGACGGTCATCTGAAGCGTGACGGCCGAGGTTTACACGAGAGGAATTGGA
TTATGTTCGAGGAAGACTTGCTGCTTAAGCTGTTGAAGTGGCTGAAGAGC
CTGAAGCGAGTCTCGGTCAAAAAGGTTCGCGAGTACATCAACAACGTGCT
GCTCGCGAGGGAAGGAGGGATGGAGGCGTTGGATAAGTACGGCCTGAGTT
TGCCCATCTCTACGTCCACGACCCACTCGTGGATGATCAAAATCGGCTGC
AAATACGACCGCGCGCACCAGTCGTTCTACACGGATGCACACGAGAGGAA
GGATGTCGTGGAAAACCGCGGGTGCTACGTGAGGGAGAAGCGCCGGTTGG
CCCTGCGGACGTACAAGCCGAGGACGCTACTCCAGTGGGTTCGCGAGTTT
CGAAAACTCGACGGTCATCTGAAGCGTGACGGCCGAGGTTTACACGAGAG
GAATTGGATTATGTTCGAGGAAGACTTGCTGCTTAAGCTGTTGAAGTGGC
TGAAGAGCCTGAAGCGAGTCTCGGTCAAAAAGGTTCGCGAGTACATCAAC
AACGTGCTGCTCGCGAGGGAAGGAGGGATGGAGGCGTTGGATAAGTACGG
CCTGAGTTTGCCCATCTCTACGTCCACGACCCACTCGTGGATGATCAAAA
TCGGCTGCAAATACGACCGCGCGCACCAGTCGTTCTACACGGATGCACAC
GAGAGGAAGGATGTCGTGGAAAACCGCGGGTGCTACGTGAGGGAGAAGCG
CCGGTTGGCCCTGCGG
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