mRNA_M-pyrifera_M_contig87735.20384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87735.20384.1
Unique NamemRNA_M-pyrifera_M_contig87735.20384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87735.20384.1 vs. uniprot
Match: A0A518FZ06_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A518FZ06_9PLAN)

HSP 1 Score: 180 bits (457), Expect = 6.390e-57
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 WLMIKIDISTNLMWSELVLHFALPNSASPRDELAQLSDHKPLIAFLHQMLKEFWDERNEKGLRIIYLNYEKWLRKRDWYDPTSPKWFDWE 270
            WLMIKI+I TNLMWSELVLHFALPNS SPRDEL +LSDHKPLI+FLHQMLKEFW ERNEKGLRII+LNYEKWLRKRDWYDPTS KWFDWE
Sbjct:   48 WLMIKIEIDTNLMWSELVLHFALPNSESPRDELEKLSDHKPLISFLHQMLKEFWRERNEKGLRIIFLNYEKWLRKRDWYDPTSSKWFDWE 137
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BLAST of mRNA_M-pyrifera_M_contig87735.20384.1 vs. uniprot
Match: A0A517ZPT1_9PLAN (Uncharacterized protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZPT1_9PLAN)

HSP 1 Score: 100 bits (248), Expect = 2.560e-25
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 WLMIKIDISTNLMWSELVLHFALPNSASPRDELAQLSDHKPLIAFLHQMLKEFWDERNEKGLRIIYLNYEKWLRKRDWYDPTSPKWFD 264
            WL++K+D   NL W+ L+L  A P + SPR EL    DH P+I  + Q+L  F  ER E GLR+IYL YEKWLRK+ WY    P W +
Sbjct:   33 WLIVKVDDGNNLHWTALILELAFPKARSPRKELEACEDHLPVIEIMFQLLDSFCQERQESGLRLIYLTYEKWLRKQSWYKRGWPGWVE 120
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BLAST of mRNA_M-pyrifera_M_contig87735.20384.1 vs. uniprot
Match: A0A540X9D1_9DELT (Uncharacterized protein n=2 Tax=Myxococcus TaxID=32 RepID=A0A540X9D1_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 5.620e-10
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 WLMIKIDISTNLMWSELVLHFALPNSASPRDELAQLSDHKPLIAFLHQMLKEFWDERNEK-GLRIIYLNYEKWLRKRDWYDPTSPKW 258
            WL++K+D  +N  WS LV+  A  +     D   +  ++   +AFL   L+ F  ER    G R I+L ++ WLRK++WYD  SP W
Sbjct:   33 WLIVKVDSGSNFGWSGLVVLLARKSGHPKFDPTEEKPEN---VAFLLDTLETFLAERKTMDGPRTIFLRFDDWLRKQEWYDSESPGW 116
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BLAST of mRNA_M-pyrifera_M_contig87735.20384.1 vs. uniprot
Match: A0A2S8GCB7_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GCB7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.660e-7
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    1 WLMIKIDISTNLMWSELVLHFALPNSASPRDELAQLSD--HKPLIAFLHQMLKEFWDERNEKGLRIIYLNYEKWLRKR 228
            WL ++   + N+ WS ++    +PN     DE A+LSD     L+  L Q+L EF   R E GLR IY  YEKWL++R
Sbjct:   51 WLAMRYRRAHNMAWSGMIRREVIPNV----DE-AELSDGQQSELLLALRQLLVEFMQHRKEVGLRSIYHEYEKWLKRR 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87735.20384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518FZ06_9PLAN6.390e-5790.00Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517ZPT1_9PLAN2.560e-2548.86Uncharacterized protein n=1 Tax=Symmachiella dynat... [more]
A0A540X9D1_9DELT5.620e-1036.78Uncharacterized protein n=2 Tax=Myxococcus TaxID=3... [more]
A0A2S8GCB7_9BACT1.660e-741.03Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87735contigM-pyrifera_M_contig87735:2..274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size267
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.862925-UTR-M-pyrifera_M_contig87735:1..71622816786.862925-UTR-M-pyrifera_M_contig87735:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87735 2..7 +
1692278178.1944976-UTR-M-pyrifera_M_contig87735:1..71692278178.1944976-UTR-M-pyrifera_M_contig87735:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87735 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.8740644-CDS-M-pyrifera_M_contig87735:7..2741622816786.8740644-CDS-M-pyrifera_M_contig87735:7..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87735 8..274 +
1692278178.2048118-CDS-M-pyrifera_M_contig87735:7..2741692278178.2048118-CDS-M-pyrifera_M_contig87735:7..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87735 8..274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87735.20384.1prot_M-pyrifera_M_contig87735.20384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87735 8..274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87735.20384.1

>prot_M-pyrifera_M_contig87735.20384.1 ID=prot_M-pyrifera_M_contig87735.20384.1|Name=mRNA_M-pyrifera_M_contig87735.20384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MIKIDISTNLMWSELVLHFALPNSASPRDELAQLSDHKPLIAFLHQMLKE
FWDERNEKGLRIIYLNYEKWLRKRDWYDPTSPKWFDWE*
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mRNA from alignment at M-pyrifera_M_contig87735:2..274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87735.20384.1 ID=mRNA_M-pyrifera_M_contig87735.20384.1|Name=mRNA_M-pyrifera_M_contig87735.20384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig87735:2..274+ (Macrocystis pyrifera P11B4 male)
TGGTTAATGATCAAGATTGATATCAGTACAAACCTGATGTGGTCAGAACT
GGTTCTGCATTTCGCCTTACCGAACAGCGCATCACCCCGAGATGAACTGG
CACAGCTGTCCGACCATAAACCTCTCATCGCTTTTCTGCATCAAATGTTG
AAAGAGTTCTGGGATGAGCGGAACGAAAAGGGGCTGCGAATTATCTATCT
GAACTATGAGAAGTGGTTGCGGAAACGCGACTGGTATGATCCCACATCAC
CTAAATGGTTTGATTGGGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87735:2..274+

>mRNA_M-pyrifera_M_contig87735.20384.1 ID=mRNA_M-pyrifera_M_contig87735.20384.1|Name=mRNA_M-pyrifera_M_contig87735.20384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig87735:2..274+ (Macrocystis pyrifera P11B4 male)
ATGATCAAGATTGATATCAGTACAAACCTGATGTGGTCAGAACTGGTTCT
GCATTTCGCCTTACCGAACAGCGCATCACCCCGAGATGAACTGGCACAGC
TGTCCGACCATAAACCTCTCATCGCTTTTCTGCATCAAATGTTGAAAGAG
TTCTGGGATGAGCGGAACGAAAAGGGGCTGCGAATTATCTATCTGAACTA
TGAGAAGTGGTTGCGGAAACGCGACTGGTATGATCCCACATCACCTAAAT
GGTTTGATTGGGAGTAGATGATCAAGATTGATATCAGTACAAACCTGATG
TGGTCAGAACTGGTTCTGCATTTCGCCTTACCGAACAGCGCATCACCCCG
AGATGAACTGGCACAGCTGTCCGACCATAAACCTCTCATCGCTTTTCTGC
ATCAAATGTTGAAAGAGTTCTGGGATGAGCGGAACGAAAAGGGGCTGCGA
ATTATCTATCTGAACTATGAGAAGTGGTTGCGGAAACGCGACTGGTATGA
TCCCACATCACCTAAATGGTTTGATTGGGAGTAG
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