mRNA_M-pyrifera_M_contig87724.20379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87724.20379.1
Unique NamemRNA_M-pyrifera_M_contig87724.20379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A8H7ENN3_9FUNG (La ribonucleoprotein domain member 1 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ENN3_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 6.800e-25
Identity = 99/131 (75.57%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKRRIHLKPELASTLKQFRCIQDFRDREA 393
            ER++LGVGQSQEMNTLFRFWSHFLRDHFN RMYNEFK LAVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RKDK++  L   L + L +++ ++DFR+ EA
Sbjct:  593 ERKQLGVGQSQEMNTLFRFWSHFLRDHFNKRMYNEFKKLAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAYLYYRKDKKKRELNERLTTLLAKYKTVKDFRNAEA 723
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BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A077WEP9_9FUNG (HTH La-type RNA-binding domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WEP9_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 3.250e-24
Identity = 106/132 (80.30%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKRR-IHLKPELASTLKQFRCIQDFRDREA 393
            ER+RLGVGQSQEMNTLFRFWSHFLRDH+N RMYNEFK LAVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDK+R + +   L S L Q++ ++DFR+ +A
Sbjct:  674 ERKRLGVGQSQEMNTLFRFWSHFLRDHYNKRMYNEFKKLAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKKRELKIGDRLNSLLSQYKSVEDFRNAKA 805
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BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A8H7BXD4_9FUNG (La ribonucleoprotein domain member 1 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BXD4_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 1.120e-23
Identity = 99/131 (75.57%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKRRIHLKPELASTLKQFRCIQDFRDREA 393
            ER++ GVG SQEMNTLFRFWSHFLRDHFN RMYNEFK LAVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     RKDK++  L   L + LK+++ ++DFR  EA
Sbjct:  623 ERKQQGVGHSQEMNTLFRFWSHFLRDHFNKRMYNEFKQLAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYLYYRKDKKKRELDSRLEALLKKYKSVEDFRHGEA 753
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BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A162UDH3_PHYB8 (Uncharacterized protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162UDH3_PHYB8)

HSP 1 Score: 99.8 bits (247), Expect = 1.460e-23
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKRRIHLKPE--LASTLKQFRCIQDFR 381
            ER++ GVGQSQEMNTLFRFWSHFLRDH+N RMYNEFK LAVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDK +  LKP   L + L +F+  +DF+
Sbjct:   78 ERKQSGVGQSQEMNTLFRFWSHFLRDHYNKRMYNEFKKLAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKNKRELKPSERLEALLSKFKSAKDFK 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A162WU11_PHYB8 (Uncharacterized protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162WU11_PHYB8)

HSP 1 Score: 99.0 bits (245), Expect = 2.850e-23
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLEC 162
            ER++ GVGQSQEMNTLFRFWSHFLRDH+N RMYNEFK LAVEDA   YRYGLEC
Sbjct:   78 ERKQTGVGQSQEMNTLFRFWSHFLRDHYNKRMYNEFKRLAVEDANQNYRYGLEC 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A8H7VGL5_9FUNG (HTH La-type RNA-binding domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VGL5_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 2.870e-23
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKRRIHLK--PELASTLKQFRCIQDFRDREA 393
            ER+RLGVGQSQEMNTLFRFWSHFLRDHFN RMYNEFK  AVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDK +  LK    L+  L +++ ++DFR+ +A
Sbjct:  746 ERKRLGVGQSQEMNTLFRFWSHFLRDHFNKRMYNEFKKFAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDKNKRELKVNERLSELLSKYKSVKDFRNAQA 878
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BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A1X2H6N5_SYNRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H6N5_SYNRA)

HSP 1 Score: 102 bits (253), Expect = 1.340e-22
Identity = 96/132 (72.73%), Postives = 106/132 (80.30%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDK--RRIHLKPELASTLKQFRCIQDFRDRE 390
            ER+RLGVGQSQEMNTLFRFWSHFLRDH N RMYNEFK LAVEDA   YRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        RKDK  R + L   ++  + Q++ ++DFR+ E
Sbjct:  645 ERKRLGVGQSQEMNTLFRFWSHFLRDHLNKRMYNEFKKLAVEDANQNYRYGLECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFWAYLYYRKDKSKRDLKLNARVSELVSQYKSVKDFRNAE 776
[Close]
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A4Q0A2U7_9FUNG (HTH La-type RNA-binding domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A2U7_9FUNG)

HSP 1 Score: 102 bits (253), Expect = 1.380e-22
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLEC 162
            ER+RLGVGQSQEMNTLFRFWSHFLRDHFN RMY EFK LA+EDA S+YRYGLEC
Sbjct: 1002 ERKRLGVGQSQEMNTLFRFWSHFLRDHFNRRMYTEFKRLAIEDARSQYRYGLEC 1055
[Close]
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: I1BRW2_RHIO9 (HTH La-type RNA-binding domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BRW2_RHIO9)

HSP 1 Score: 101 bits (252), Expect = 1.800e-22
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLEC 162
            ER+RLGVG SQEMNTLFRFWSHFLRDHFN RMYNEFK LAVEDA   YRYGLEC
Sbjct:  553 ERKRLGVGHSQEMNTLFRFWSHFLRDHFNKRMYNEFKRLAVEDANQNYRYGLEC 606
[Close]
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Match: A0A7L1Z4I8_9PASS (LAR1B protein (Fragment) n=4 Tax=Passeriformes TaxID=9126 RepID=A0A7L1Z4I8_9PASS)

HSP 1 Score: 94.4 bits (233), Expect = 2.770e-22
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRYGLEC 162
            ER+RLG+GQSQEMNTLFRFWS FLRDHFN +MY EFK +AVEDA   YRYGLEC
Sbjct:   67 ERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQIAVEDAKEHYRYGLEC 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87724.20379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7ENN3_9FUNG6.800e-2575.57La ribonucleoprotein domain member 1 n=1 Tax=Apoph... [more]
A0A077WEP9_9FUNG3.250e-2480.30HTH La-type RNA-binding domain-containing protein ... [more]
A0A8H7BXD4_9FUNG1.120e-2375.57La ribonucleoprotein domain member 1 n=1 Tax=Apoph... [more]
A0A162UDH3_PHYB81.460e-2379.84Uncharacterized protein (Fragment) n=1 Tax=Phycomy... [more]
A0A162WU11_PHYB82.850e-2383.33Uncharacterized protein (Fragment) n=1 Tax=Phycomy... [more]
A0A8H7VGL5_9FUNG2.870e-2378.95HTH La-type RNA-binding domain-containing protein ... [more]
A0A1X2H6N5_SYNRA1.340e-2272.73HTH La-type RNA-binding domain-containing protein ... [more]
A0A4Q0A2U7_9FUNG1.380e-2287.04HTH La-type RNA-binding domain-containing protein ... [more]
I1BRW2_RHIO91.800e-2287.04HTH La-type RNA-binding domain-containing protein ... [more]
A0A7L1Z4I8_9PASS2.770e-2279.63LAR1B protein (Fragment) n=4 Tax=Passeriformes Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87724contigM-pyrifera_M_contig87724:31..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score101.3
Seed ortholog evalue3.5e-19
Seed eggNOG ortholog936053.I1BRW2
KEGG koko:K18757
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006873,GO:0006875,GO:0006878,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0019725,GO:0030003,GO:0031323,GO:0031326,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042592,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051171,GO:0051246,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0097159,GO:0098771,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.Domain in the RNA-binding Lupus La protein; unknown function
EggNOG OGs1GSYJ@112252,38EPU@33154,3NZRJ@4751,COG5193@1,KOG2590@2759
COG Functional cat.JO
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.701671-CDS-M-pyrifera_M_contig87724:30..4231622816786.701671-CDS-M-pyrifera_M_contig87724:30..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87724 31..423 +
1692278178.1280951-CDS-M-pyrifera_M_contig87724:30..4231692278178.1280951-CDS-M-pyrifera_M_contig87724:30..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87724 31..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87724.20379.1prot_M-pyrifera_M_contig87724.20379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87724 31..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87724.20379.1

>prot_M-pyrifera_M_contig87724.20379.1 ID=prot_M-pyrifera_M_contig87724.20379.1|Name=mRNA_M-pyrifera_M_contig87724.20379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
ERQRLGVGQSQEMNTLFRFWSHFLRDHFNYRMYNEFKALAVEDAGSKYRY
GLECLFRFFSYGLERRLRKDLLNDFQVLTMKDFYTGNLYGLEKFWAFMKY
RKDKRRIHLKPELASTLKQFRCIQDFRDREA
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mRNA from alignment at M-pyrifera_M_contig87724:31..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87724.20379.1 ID=mRNA_M-pyrifera_M_contig87724.20379.1|Name=mRNA_M-pyrifera_M_contig87724.20379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig87724:31..423+ (Macrocystis pyrifera P11B4 male)
GAGCGCCAGCGCCTGGGCGTGGGACAGTCGCAGGAGATGAACACGCTGTT
CCGCTTCTGGTCGCACTTCCTGCGCGACCACTTCAACTACCGCATGTACA
ACGAGTTCAAGGCGCTCGCGGTGGAGGATGCGGGCAGCAAGTACCGCTAC
GGCCTGGAGTGCCTCTTCCGCTTCTTCAGCTACGGCCTCGAGAGGCGTCT
CCGGAAGGACCTCCTGAACGACTTCCAGGTCCTGACCATGAAGGACTTCT
ACACGGGCAACCTGTACGGCCTCGAGAAGTTCTGGGCCTTCATGAAGTAC
AGGAAGGATAAGCGCCGCATCCACCTGAAGCCCGAGCTGGCCTCCACCCT
GAAGCAGTTCAGGTGCATTCAGGACTTCCGCGACCGCGAGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87724:31..423+

>mRNA_M-pyrifera_M_contig87724.20379.1 ID=mRNA_M-pyrifera_M_contig87724.20379.1|Name=mRNA_M-pyrifera_M_contig87724.20379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig87724:31..423+ (Macrocystis pyrifera P11B4 male)
GAGCGCCAGCGCCTGGGCGTGGGACAGTCGCAGGAGATGAACACGCTGTT
CCGCTTCTGGTCGCACTTCCTGCGCGACCACTTCAACTACCGCATGTACA
ACGAGTTCAAGGCGCTCGCGGTGGAGGATGCGGGCAGCAAGTACCGCTAC
GGCCTGGAGTGCCTCTTCCGCTTCTTCAGCTACGGCCTCGAGAGGCGTCT
CCGGAAGGACCTCCTGAACGACTTCCAGGTCCTGACCATGAAGGACTTCT
ACACGGGCAACCTGTACGGCCTCGAGAAGTTCTGGGCCTTCATGAAGTAC
AGGAAGGATAAGCGCCGCATCCACCTGAAGCCCGAGCTGGCCTCCACCCT
GAAGCAGTTCAGGTGCATTCAGGACTTCCGCGACCGCGAGGCTGAGCGCC
AGCGCCTGGGCGTGGGACAGTCGCAGGAGATGAACACGCTGTTCCGCTTC
TGGTCGCACTTCCTGCGCGACCACTTCAACTACCGCATGTACAACGAGTT
CAAGGCGCTCGCGGTGGAGGATGCGGGCAGCAAGTACCGCTACGGCCTGG
AGTGCCTCTTCCGCTTCTTCAGCTACGGCCTCGAGAGGCGTCTCCGGAAG
GACCTCCTGAACGACTTCCAGGTCCTGACCATGAAGGACTTCTACACGGG
CAACCTGTACGGCCTCGAGAAGTTCTGGGCCTTCATGAAGTACAGGAAGG
ATAAGCGCCGCATCCACCTGAAGCCCGAGCTGGCCTCCACCCTGAAGCAG
TTCAGGTGCATTCAGGACTTCCGCGACCGCGAGGCT
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