mRNA_M-pyrifera_M_contig87718.20377.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87718.20377.1
Unique NamemRNA_M-pyrifera_M_contig87718.20377.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: UPI001C869FC4 (hypothetical protein n=1 Tax=Dyadobacter sp. NIV53 TaxID=2861765 RepID=UPI001C869FC4)

HSP 1 Score: 250 bits (638), Expect = 1.200e-77
Identity = 138/269 (51.30%), Postives = 185/269 (68.77%), Query Frame = 1
Query:   13 KQNLIQ---VINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYF-----FYPHRGWLKNKKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAFHGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAFLYNRVMFSYYLIFAF 795
            K +L+Q   VI FLF S++ +F V+L K GIS  S+  +FQSNI  +S ++TES VSL++G Y LF+L  K++K A  + F+ ILGAKR+AI G+ I  L Y+      +  +   +  K  A+IF   GI++A  W  II G F+  I+  TGLS NRF MGR+GRFQLVF+ I++ P  G GYGLGY+ENILYY  +F S+FH DFYR+YLEFG I+F  WLYI G F + NKL  +  IL+ LLMQTDN F+Y+RVM+++YLI+AF
Sbjct:  114 KTSLLQHRKVIYFLFWSYVFVFFVQLAKDGISLVSILTIFQSNIIVDSEFETESDVSLVLGPYALFFLHYKRWKYAAFSIFLVILGAKRVAILGLAISILFYYVICPVIFRKQTEERPSKKFAIIFSVCGILVASIWAMIIEGTFSDYIQEVTGLSINRFLMGRMGRFQLVFSNIHEHPFPGFGYGLGYIENILYYVANFPSSFHNDFYRLYLEFGVIVFGIWLYIQGYFCTSNKLLFSLIILIFLLMQTDNVFMYDRVMYAFYLIYAF 382          
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: A0A2E2SEQ0_9BACT (Uncharacterized protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A2E2SEQ0_9BACT)

HSP 1 Score: 212 bits (540), Expect = 3.420e-63
Identity = 117/266 (43.98%), Postives = 171/266 (64.29%), Query Frame = 1
Query:    1 KYCDKQNLIQVINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYFFYP--HRGWL-KNKKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAFHGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAFLYNRVMFSYYLIF 789
            K  D  ++ ++I FLF  F++++ +ELL  G++  S+           S++DTESG SLI GFY LF+L  K Y   L++  + ILGAKRIAI G+LI  ++YF YP  ++ W+ K+KK   +I   +  ++A FW  I TG +++ I + TG+S N FFMGRL R    F+ I     +  GYG GY+EN+LYY ++  + FH DFYR++LE GAI F  ++YI  KF+ KN+LA +S  LL++LMQTDN  +Y  VM+S+Y+IF
Sbjct:  112 KMLDISSVFKIIYFLFYLFMMMYAMELLVHGVTISSILTTLTGGSIINSDFDTESGSSLIFGFYSLFFLMNKNYYHFLISLLLIILGAKRIAIAGVLISVILYFLYPFVYKKWISKSKKTFLIITTFILFLLAHFWTLIYTGVYDKEIHNLTGISPNAFFMGRLNRVSQFFDVIKDSSNYFTGYGFGYVENVLYYSMNLPTPFHNDFYRMFLEMGAIFFFSFIYILLKFAIKNRLAFSSLFLLLILMQTDNVLIYETVMYSFYIIF 377          
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: A0A369I760_9BACT (Uncharacterized protein n=1 Tax=Runella aurantiaca TaxID=2282308 RepID=A0A369I760_9BACT)

HSP 1 Score: 210 bits (534), Expect = 3.080e-62
Identity = 112/264 (42.42%), Postives = 167/264 (63.26%), Query Frame = 1
Query:    4 YCDKQNLIQVINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYFFYP--HRGWLKN-KKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAFHGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAFLYNRVMFSYYLI 786
            Y D  +L +VI+F F ++I++++ EL+  G+SFQS+     SN  T S+Y+TESG SLI GFY +++L  K+Y+  +L+    ILGAKRIAIFG+++  ++ +FYP  +   ++N K    ++F  V +++A FW  + TG F+  I    G+S N FFMGRL R    F+ +     F +GYG+GY ENILYY +   + FH DFY+ Y EFG  LF  W Y   KF+  + L+ +S  LL++LMQTDN + Y  VM+S+Y +
Sbjct:  114 YVDYDDLRKVISFQFYNYIVIYLAELILKGVSFQSILSSLSSNYITNSSYETESGSSLIFGFYSIYFLHYKRYQSFVLSVLFVILGAKRIAIFGLVLSLIVLYFYPFIYNKIIRNVKNTFCVVFALVMLLLANFWTILYTGKFDSQIHDLIGVSPNAFFMGRLSRISTFFSLLKDKDDFFLGYGIGYAENILYYFMKLPTPFHNDFYKFYFEFGPFLFLLWCYFMVKFAIIHPLSFSSFFLLLILMQTDNVYTYETVMYSFYFV 377          
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: A0A074KU85_9BACT (Uncharacterized protein n=1 Tax=Anditalea andensis TaxID=1048983 RepID=A0A074KU85_9BACT)

HSP 1 Score: 207 bits (528), Expect = 2.420e-61
Identity = 108/264 (40.91%), Postives = 169/264 (64.02%), Query Frame = 1
Query:    1 KYCDKQNLIQVINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYFFYPHRGWL--KNKKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAFHGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAFLYNRVMFSYYLI 786
            K  +K++L+++IN+LF +F+ L+++ L+K G++  ++         T S  +TESG+SLI GF+ L++L  K+Y L LL+ F+ +LG KRIA+ G+L+  ++++ YP    L   N+ + A  F  +  I A  W  +  G ++ +I+  TG+S N FFMGRL R    F  +     + +G+GLGY+ENILYY V+  + FH DFYR++LEFG ILF  W ++  K+ S N L+ +  ILL++LMQTDN F+Y  VM+ +YLI
Sbjct:  118 KKVNKESLLKIINYLFWAFVFLYIITLIKLGVTLDAIIGAISGTDLTNSESETESGLSLIFGFFSLYFLFHKRYNLFLLSLFLVVLGGKRIAMGGVLLSIIVFYIYPVFNLLIRNNRNLFAAFFTVILFIAANLWTLLFFGEYDDVIQEMTGISPNLFFMGRLNRISDFFYALKDSDNYFVGFGLGYVENILYYFVNLETPFHNDFYRLFLEFGPILFCVWCFVMTKYLSFNSLSFSCFILLLILMQTDNVFIYETVMYPFYLI 381          
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: UPI0012FCF3C8 (hypothetical protein n=1 Tax=Algoriphagus vanfongensis TaxID=426371 RepID=UPI0012FCF3C8)

HSP 1 Score: 161 bits (408), Expect = 3.160e-44
Identity = 107/274 (39.05%), Postives = 155/274 (56.57%), Query Frame = 1
Query:   13 KQNLIQV---INFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYFFYPHRGWLKNKKVSAL---IFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAFHGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAFLYNRVMFSYYLIFAFAYLKEEK 816
            K N IQ+   + FLF     +++  L+ SG+SF SL     S     S+ DTES  SL   F+ LF+LS+K YKL   A F+T++G KRIAI   L  + +Y    +   L N   S L   IF  + +I    W  + +G F+ +I+ YTGLS+N FFMGRL      FN       F +GYG+GY++N+LY   +    FH DF R  LEFG+  F  W++I  KF + + LA ++ IL+++LMQTDN FLY   M+ +Y I +++ +  +K
Sbjct:   53 KLNSIQINKLLKFLFWLNFFIYLFSLISSGVSFSSLIDSIFSFDFVNSDVDTESTSSLYFCFFVLFFLSKKNYKLFFFALFLTVIGGKRIAILASLFSSFVYLLLINYKILLNYLNSNLFKYIFSFLLLICGNLWFLLYSGYFDNVIQDYTGLSSNAFFMGRLSIAGEFFNYKPDEFDFFLGYGVGYVDNVLYNFANVERLFHNDFLRFILEFGSFFFFIWVFIHLKFITISPLAFSNFILILVLMQTDNVFLYEIAMYIFYSILSYSLILYKK 326          
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Match: A0A7Y3DT79_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3DT79_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 4.620e-6
Identity = 60/215 (27.91%), Postives = 96/215 (44.65%), Query Frame = 1
Query:    4 YCDKQNLIQVINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIAT-ESNYDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICTLIYFFYPHRGWLKNKKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTGLSANRFFMGRLGRFQ--LVFNEINKLPIFGMGYGLGYMENILYYKVSFASAF-HGDFYRIYLEFG 636
            + D  N+   I      FI +F+V+ + +G      G    S I+  +S    ES ++  +G + +F+L +K Y   LL   I +L  KR+ +FG++ C L+ FF P R  ++   +S  I     ++  +F   +  G F+  I+   G+S N   MGR   +Q  + F + N       G G G + N L    S      H DF  I  E G
Sbjct:   91 FYDFSNIKVNIKLFNLLFIAVFLVKAVLAG----QFGVFALSQISLIDSKSALESTLAFPLGLFAIFFLYKKNYLWFLLNVVIVVLAFKRVVLFGVVACVLL-FFIPRR--IRAVLLSPYIITTAILLGVVFQLTLAVGEFDSFIKDAFGISTNHLLMGRQELWQRAIDFTDFNFWSFSYYGVGHGTLTNFLEGSYSMNRVLLHNDFLLILFENG 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87718.20377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001C869FC41.200e-7751.30hypothetical protein n=1 Tax=Dyadobacter sp. NIV53... [more]
A0A2E2SEQ0_9BACT3.420e-6343.98Uncharacterized protein n=1 Tax=Cytophagaceae bact... [more]
A0A369I760_9BACT3.080e-6242.42Uncharacterized protein n=1 Tax=Runella aurantiaca... [more]
A0A074KU85_9BACT2.420e-6140.91Uncharacterized protein n=1 Tax=Anditalea andensis... [more]
UPI0012FCF3C83.160e-4439.05hypothetical protein n=1 Tax=Algoriphagus vanfonge... [more]
A0A7Y3DT79_9DELT4.620e-627.91Uncharacterized protein (Fragment) n=1 Tax=Desulfo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87718contigM-pyrifera_M_contig87718:3..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score207.2
Seed ortholog evalue9.6e-51
Seed eggNOG ortholog1048983.EL17_21150
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CFSE@1,33P87@2,47WYZ@768503,4PC8K@976
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size825
Cds size825
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.6286676-CDS-M-pyrifera_M_contig87718:2..8271622816786.6286676-CDS-M-pyrifera_M_contig87718:2..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87718 3..827 -
1692278178.1014233-CDS-M-pyrifera_M_contig87718:2..8271692278178.1014233-CDS-M-pyrifera_M_contig87718:2..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87718 3..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87718.20377.1prot_M-pyrifera_M_contig87718.20377.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87718 3..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87718.20377.1

>prot_M-pyrifera_M_contig87718.20377.1 ID=prot_M-pyrifera_M_contig87718.20377.1|Name=mRNA_M-pyrifera_M_contig87718.20377.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp
KYCDKQNLIQVINFLFCSFIILFVVELLKSGISFQSLGQVFQSNIATESN
YDTESGVSLIMGFYYLFYLSRKKYKLALLAAFITILGAKRIAIFGILICT
LIYFFYPHRGWLKNKKVSALIFLCVGIIIAIFWDGIITGGFNRIIESYTG
LSANRFFMGRLGRFQLVFNEINKLPIFGMGYGLGYMENILYYKVSFASAF
HGDFYRIYLEFGAILFAFWLYITGKFSSKNKLALTSSILLILLMQTDNAF
LYNRVMFSYYLIFAFAYLKEEKKQ*
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mRNA from alignment at M-pyrifera_M_contig87718:3..827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87718.20377.1 ID=mRNA_M-pyrifera_M_contig87718.20377.1|Name=mRNA_M-pyrifera_M_contig87718.20377.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=825bp|location=Sequence derived from alignment at M-pyrifera_M_contig87718:3..827- (Macrocystis pyrifera P11B4 male)
AAGTATTGTGACAAGCAAAACTTGATACAAGTTATCAATTTTTTATTTTG TTCATTTATCATTCTTTTTGTGGTAGAACTTTTAAAAAGCGGAATTTCTT TTCAATCATTGGGTCAAGTATTTCAATCAAATATAGCTACCGAATCCAAT TATGATACCGAAAGTGGAGTTTCATTGATAATGGGGTTCTATTATTTATT CTATCTTTCTAGAAAAAAATATAAGCTGGCTTTACTTGCTGCATTTATAA CCATTCTAGGGGCAAAACGAATTGCAATTTTTGGAATTCTCATCTGTACT TTAATCTATTTTTTTTATCCGCATAGAGGTTGGTTGAAAAATAAAAAAGT AAGTGCTTTAATATTTTTATGTGTAGGTATTATAATTGCAATTTTCTGGG ATGGGATAATAACCGGAGGGTTTAATCGGATAATTGAAAGTTATACAGGT CTTTCAGCGAACCGTTTTTTTATGGGTAGGTTAGGTCGTTTTCAATTGGT TTTCAACGAAATAAATAAATTACCAATTTTTGGTATGGGATATGGATTGG GATACATGGAAAACATACTATACTATAAAGTATCATTTGCATCCGCATTT CATGGTGATTTTTATAGAATTTATCTGGAATTTGGGGCTATACTTTTTGC TTTTTGGTTATATATAACGGGTAAATTTTCTTCGAAAAATAAACTTGCTC TAACTTCCAGCATATTATTGATTTTACTTATGCAAACAGATAATGCCTTC CTATATAACAGGGTAATGTTTTCCTATTATTTAATTTTCGCTTTTGCTTA TTTGAAAGAAGAAAAAAAACAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87718:3..827-

>mRNA_M-pyrifera_M_contig87718.20377.1 ID=mRNA_M-pyrifera_M_contig87718.20377.1|Name=mRNA_M-pyrifera_M_contig87718.20377.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig87718:3..827- (Macrocystis pyrifera P11B4 male)
AAGTATTGTGACAAGCAAAACTTGATACAAGTTATCAATTTTTTATTTTG
TTCATTTATCATTCTTTTTGTGGTAGAACTTTTAAAAAGCGGAATTTCTT
TTCAATCATTGGGTCAAGTATTTCAATCAAATATAGCTACCGAATCCAAT
TATGATACCGAAAGTGGAGTTTCATTGATAATGGGGTTCTATTATTTATT
CTATCTTTCTAGAAAAAAATATAAGCTGGCTTTACTTGCTGCATTTATAA
CCATTCTAGGGGCAAAACGAATTGCAATTTTTGGAATTCTCATCTGTACT
TTAATCTATTTTTTTTATCCGCATAGAGGTTGGTTGAAAAATAAAAAAGT
AAGTGCTTTAATATTTTTATGTGTAGGTATTATAATTGCAATTTTCTGGG
ATGGGATAATAACCGGAGGGTTTAATCGGATAATTGAAAGTTATACAGGT
CTTTCAGCGAACCGTTTTTTTATGGGTAGGTTAGGTCGTTTTCAATTGGT
TTTCAACGAAATAAATAAATTACCAATTTTTGGTATGGGATATGGATTGG
GATACATGGAAAACATACTATACTATAAAGTATCATTTGCATCCGCATTT
CATGGTGATTTTTATAGAATTTATCTGGAATTTGGGGCTATACTTTTTGC
TTTTTGGTTATATATAACGGGTAAATTTTCTTCGAAAAATAAACTTGCTC
TAACTTCCAGCATATTATTGATTTTACTTATGCAAACAGATAATGCCTTC
CTATATAACAGGGTAATGTTTTCCTATTATTTAATTTTCGCTTTTGCTTA
TTTGAAAGAAGAAAAAAAACAATAAAAGTATTGTGACAAGCAAAACTTGA
TACAAGTTATCAATTTTTTATTTTGTTCATTTATCATTCTTTTTGTGGTA
GAACTTTTAAAAAGCGGAATTTCTTTTCAATCATTGGGTCAAGTATTTCA
ATCAAATATAGCTACCGAATCCAATTATGATACCGAAAGTGGAGTTTCAT
TGATAATGGGGTTCTATTATTTATTCTATCTTTCTAGAAAAAAATATAAG
CTGGCTTTACTTGCTGCATTTATAACCATTCTAGGGGCAAAACGAATTGC
AATTTTTGGAATTCTCATCTGTACTTTAATCTATTTTTTTTATCCGCATA
GAGGTTGGTTGAAAAATAAAAAAGTAAGTGCTTTAATATTTTTATGTGTA
GGTATTATAATTGCAATTTTCTGGGATGGGATAATAACCGGAGGGTTTAA
TCGGATAATTGAAAGTTATACAGGTCTTTCAGCGAACCGTTTTTTTATGG
GTAGGTTAGGTCGTTTTCAATTGGTTTTCAACGAAATAAATAAATTACCA
ATTTTTGGTATGGGATATGGATTGGGATACATGGAAAACATACTATACTA
TAAAGTATCATTTGCATCCGCATTTCATGGTGATTTTTATAGAATTTATC
TGGAATTTGGGGCTATACTTTTTGCTTTTTGGTTATATATAACGGGTAAA
TTTTCTTCGAAAAATAAACTTGCTCTAACTTCCAGCATATTATTGATTTT
ACTTATGCAAACAGATAATGCCTTCCTATATAACAGGGTAATGTTTTCCT
ATTATTTAATTTTCGCTTTTGCTTATTTGAAAGAAGAAAAAAAACAATAA
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