mRNA_M-pyrifera_M_contig87667.20366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87667.20366.1
Unique NamemRNA_M-pyrifera_M_contig87667.20366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87667.20366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87667contigM-pyrifera_M_contig87667:299..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.7621083-UTR-M-pyrifera_M_contig87667:298..3101622816785.7621083-UTR-M-pyrifera_M_contig87667:298..310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87667 299..310 +
1692278177.4702818-UTR-M-pyrifera_M_contig87667:298..3101692278177.4702818-UTR-M-pyrifera_M_contig87667:298..310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87667 299..310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.7721376-CDS-M-pyrifera_M_contig87667:310..6101622816785.7721376-CDS-M-pyrifera_M_contig87667:310..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87667 311..610 +
1692278177.488793-CDS-M-pyrifera_M_contig87667:310..6101692278177.488793-CDS-M-pyrifera_M_contig87667:310..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87667 311..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87667.20366.1prot_M-pyrifera_M_contig87667.20366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87667 311..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87667.20366.1

>prot_M-pyrifera_M_contig87667.20366.1 ID=prot_M-pyrifera_M_contig87667.20366.1|Name=mRNA_M-pyrifera_M_contig87667.20366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MIVGDTDGMIWVWEICANSRIGILRWGVRAHTAPVRSVAIDAALGVAVSG
GEDGRVVVSELVEGKRVAAWANDAGVDWVGLSPLEPEGIVLTHSAVTGVL
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mRNA from alignment at M-pyrifera_M_contig87667:299..610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87667.20366.1 ID=mRNA_M-pyrifera_M_contig87667.20366.1|Name=mRNA_M-pyrifera_M_contig87667.20366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig87667:299..610+ (Macrocystis pyrifera P11B4 male)
GGACGTGATCTGATGATTGTTGGCGATACGGATGGAATGATTTGGGTGTG
GGAAATTTGTGCAAACTCGAGAATTGGAATTCTCCGTTGGGGTGTACGAG
CGCATACTGCGCCAGTTCGGAGTGTAGCAATCGATGCAGCATTAGGTGTT
GCTGTGAGTGGTGGGGAGGATGGAAGGGTGGTGGTGAGTGAATTGGTGGA
AGGAAAGCGAGTTGCAGCATGGGCAAATGATGCTGGAGTGGATTGGGTAG
GATTGAGTCCTTTGGAACCAGAAGGCATTGTACTGACACATTCTGCGGTG
ACAGGCGTGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87667:299..610+

>mRNA_M-pyrifera_M_contig87667.20366.1 ID=mRNA_M-pyrifera_M_contig87667.20366.1|Name=mRNA_M-pyrifera_M_contig87667.20366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig87667:299..610+ (Macrocystis pyrifera P11B4 male)
ATGATTGTTGGCGATACGGATGGAATGATTTGGGTGTGGGAAATTTGTGC
AAACTCGAGAATTGGAATTCTCCGTTGGGGTGTACGAGCGCATACTGCGC
CAGTTCGGAGTGTAGCAATCGATGCAGCATTAGGTGTTGCTGTGAGTGGT
GGGGAGGATGGAAGGGTGGTGGTGAGTGAATTGGTGGAAGGAAAGCGAGT
TGCAGCATGGGCAAATGATGCTGGAGTGGATTGGGTAGGATTGAGTCCTT
TGGAACCAGAAGGCATTGTACTGACACATTCTGCGGTGACAGGCGTGTTA
ATGATTGTTGGCGATACGGATGGAATGATTTGGGTGTGGGAAATTTGTGC
AAACTCGAGAATTGGAATTCTCCGTTGGGGTGTACGAGCGCATACTGCGC
CAGTTCGGAGTGTAGCAATCGATGCAGCATTAGGTGTTGCTGTGAGTGGT
GGGGAGGATGGAAGGGTGGTGGTGAGTGAATTGGTGGAAGGAAAGCGAGT
TGCAGCATGGGCAAATGATGCTGGAGTGGATTGGGTAGGATTGAGTCCTT
TGGAACCAGAAGGCATTGTACTGACACATTCTGCGGTGACAGGCGTGTTA
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