mRNA_M-pyrifera_M_contig8766.20363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8766.20363.1
Unique NamemRNA_M-pyrifera_M_contig8766.20363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.840e-27
Identity = 53/77 (68.83%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKHRVD 234
            PASA AI ALP ETL A  L+ + DD   RQCCICL+EF  GE  TRLPCLHLYH+ CI+ WL TSGTCPQCK RVD
Sbjct:  532 PASARAIAALPGETLTAGSLAHLKDD--GRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRVD 606          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.290e-26
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKHRVD 234
            PASA AI ALP E L A  L+ + DD   RQCCICL++F  GE  TRLPCLHLYH  CI+ WL TSGTCPQCK RVD
Sbjct:  399 PASARAIAALPGEALTAGALAHLKDD--GRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRVD 473          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A7S1MR62_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MR62_ALECA)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-15
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 PASAAAITALPQETL-GADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCK 222
            PA AA I ALP   L GAD +   +      +C ICL+EFG G+ V  LPCLHLYH  CI++WL T  +CP CK
Sbjct:   80 PAQAADIDALPTRKLAGADNVGEQS------KCLICLEEFGEGDDVKTLPCLHLYHQRCIEQWLGTDNSCPVCK 147          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A7S1MQQ6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MQQ6_ALECA)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-15
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 PASAAAITALPQETL-GADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCK 222
            PA AA I ALP   L GA+ L   +      +C ICL+EFG G+ VT LPCLH YH  C+++WL T  +CP CK
Sbjct:   80 PAHAADINALPNRKLAGAENLGEQS------KCLICLEEFGDGDDVTTLPCLHFYHQRCVEQWLGTDNSCPVCK 147          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A6A6NXI4_9PEZI (RING-type domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6NXI4_9PEZI)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-14
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKHRVD 234
            PASA A+  LP + + A  L     D    +C IC+DE G+GE VT LPC H +H +CIK WL    TCP C+  ++
Sbjct:  330 PASAEAMARLPTKPVDASMLG----DNGKAECSICMDEVGLGEQVTELPCRHWFHGSCIKAWLGEHDTCPHCRQGIE 402          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A7L2T9M1_POMRU (PJA2 ligase (Fragment) n=1 Tax=Pomatostomus ruficeps TaxID=9176 RepID=A0A7L2T9M1_POMRU)

HSP 1 Score: 74.3 bits (181), Expect = 9.660e-14
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCC-ICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKH 225
            PA+   I  LPQ T+  D+  +        QCC IC  E+  GEVVT LPC HL+H  CI  WL  SGTCP C+H
Sbjct:  591 PATKETIDCLPQITIKGDYTGQ-------EQCCTICCSEYVEGEVVTELPCHHLFHKPCITPWLQRSGTCPVCRH 658          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A7L0C1K6_9AVES (PJA2 ligase (Fragment) n=4 Tax=Accipitrinae TaxID=8955 RepID=A0A7L0C1K6_9AVES)

HSP 1 Score: 73.9 bits (180), Expect = 1.320e-13
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDAR-QCC-ICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKHRVD 234
            PA+   I  LPQ T+        TDD+D + QCC IC  E+   E++T LPC HL+H  CI  WL  SGTCP C+H ++
Sbjct:  594 PATKETIDCLPQITV--------TDDQDGQEQCCTICCSEYVKDEIITELPCHHLFHKTCITLWLQKSGTCPICRHVLE 664          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A8C4WXD9_EPTBU (RING-type domain-containing protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WXD9_EPTBU)

HSP 1 Score: 73.6 bits (179), Expect = 1.750e-13
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCK-HRVD 234
            PAS   I +LPQ   G   L++       + C IC +EF  G+ VT LPCLHL+H ACI  WL  S TCP C+ H VD
Sbjct:  397 PASEDLIHSLPQVYFGQAHLAQN------QNCIICCNEFNFGDAVTNLPCLHLFHTACIDSWLQRSATCPVCRYHLVD 468          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A8C4WXM4_EPTBU (RING-type domain-containing protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WXM4_EPTBU)

HSP 1 Score: 73.6 bits (179), Expect = 1.750e-13
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 PASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCK-HRVD 234
            PAS   I +LPQ   G   L++       + C IC +EF  G+ VT LPCLHL+H ACI  WL  S TCP C+ H VD
Sbjct:  407 PASEDLIHSLPQVYFGQAHLAQN------QNCIICCNEFNFGDAVTNLPCLHLFHTACIDSWLQRSATCPVCRYHLVD 478          
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Match: A0A835PZV1_VANPL (RING-type domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PZV1_VANPL)

HSP 1 Score: 70.1 bits (170), Expect = 2.100e-13
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   40 ETLGADWLSRMTDDEDARQ---CCICLDEFGVGEVVTRLPCLHLYHAACIKRWLHTSGTCPQCKHRVD 234
            E L    +S +T +E   Q   C ICL++   GE+V R PCLH +HA C++RW   +G+CP C+  +D
Sbjct:   83 ELLSEKRMSLVTTEEAFEQEESCAICLEDVSAGELVARTPCLHRFHATCLRRWFENAGSCPLCRFSID 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8766.20363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L176_9PHAE1.840e-2768.83RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LR18_ECTSI1.290e-2666.23RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1MR62_ALECA2.690e-1551.35Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1MQQ6_ALECA2.690e-1550.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6A6NXI4_9PEZI1.470e-1444.16RING-type domain-containing protein n=1 Tax=Lineol... [more]
A0A7L2T9M1_POMRU9.660e-1448.00PJA2 ligase (Fragment) n=1 Tax=Pomatostomus rufice... [more]
A0A7L0C1K6_9AVES1.320e-1345.57PJA2 ligase (Fragment) n=4 Tax=Accipitrinae TaxID=... [more]
A0A8C4WXD9_EPTBU1.750e-1347.44RING-type domain-containing protein n=2 Tax=Eptatr... [more]
A0A8C4WXM4_EPTBU1.750e-1347.44RING-type domain-containing protein n=2 Tax=Eptatr... [more]
A0A835PZV1_VANPL2.100e-1341.18RING-type domain-containing protein n=1 Tax=Vanill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8766contigM-pyrifera_M_contig8766:3586..3822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D8LR18
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_004730.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.6684155-CDS-M-pyrifera_M_contig8766:3585..38221622816785.6684155-CDS-M-pyrifera_M_contig8766:3585..3822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8766 3586..3822 -
1692278177.4189775-CDS-M-pyrifera_M_contig8766:3585..38221692278177.4189775-CDS-M-pyrifera_M_contig8766:3585..3822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8766 3586..3822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8766.20363.1prot_M-pyrifera_M_contig8766.20363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8766 3586..3822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8766.20363.1

>prot_M-pyrifera_M_contig8766.20363.1 ID=prot_M-pyrifera_M_contig8766.20363.1|Name=mRNA_M-pyrifera_M_contig8766.20363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RPASAAAITALPQETLGADWLSRMTDDEDARQCCICLDEFGVGEVVTRLP
CLHLYHAACIKRWLHTSGTCPQCKHRVD*
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mRNA from alignment at M-pyrifera_M_contig8766:3586..3822-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8766.20363.1 ID=mRNA_M-pyrifera_M_contig8766.20363.1|Name=mRNA_M-pyrifera_M_contig8766.20363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig8766:3586..3822- (Macrocystis pyrifera P11B4 male)
AGGCCGGCTTCGGCGGCGGCGATCACGGCACTGCCGCAGGAGACGCTGGG CGCGGACTGGCTATCGCGCATGACGGACGACGAGGACGCCCGGCAGTGCT GCATTTGTCTCGATGAATTCGGCGTGGGGGAGGTGGTGACGCGCCTACCG TGTCTCCACCTGTACCACGCGGCCTGCATCAAGCGTTGGCTGCATACCTC CGGCACATGCCCCCAGTGCAAGCACAGGGTGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8766:3586..3822-

>mRNA_M-pyrifera_M_contig8766.20363.1 ID=mRNA_M-pyrifera_M_contig8766.20363.1|Name=mRNA_M-pyrifera_M_contig8766.20363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig8766:3586..3822- (Macrocystis pyrifera P11B4 male)
AGGCCGGCTTCGGCGGCGGCGATCACGGCACTGCCGCAGGAGACGCTGGG
CGCGGACTGGCTATCGCGCATGACGGACGACGAGGACGCCCGGCAGTGCT
GCATTTGTCTCGATGAATTCGGCGTGGGGGAGGTGGTGACGCGCCTACCG
TGTCTCCACCTGTACCACGCGGCCTGCATCAAGCGTTGGCTGCATACCTC
CGGCACATGCCCCCAGTGCAAGCACAGGGTGGACTGAAGGCCGGCTTCGG
CGGCGGCGATCACGGCACTGCCGCAGGAGACGCTGGGCGCGGACTGGCTA
TCGCGCATGACGGACGACGAGGACGCCCGGCAGTGCTGCATTTGTCTCGA
TGAATTCGGCGTGGGGGAGGTGGTGACGCGCCTACCGTGTCTCCACCTGT
ACCACGCGGCCTGCATCAAGCGTTGGCTGCATACCTCCGGCACATGCCCC
CAGTGCAAGCACAGGGTGGACTGA
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