mRNA_M-pyrifera_M_contig87647.20358.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87647.20358.1
Unique NamemRNA_M-pyrifera_M_contig87647.20358.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: A0A7S4I440_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I440_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 4.500e-30
Identity = 69/140 (49.29%), Postives = 96/140 (68.57%), Query Frame = 1
Query:  142 SIDNFIALVNQARA-AEKNEARVNNLTALLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRAGSRTVGMEEFLASPTFANGELVQSIAVHLTSPDVRFSTYKAALRPQNSHAYINAAMQVTL 558
            SI   I  ++Q +A +E + A    + A++ H  ++ANVHVR+ GS+ GNL +AKS GF+SDLAT+LLGA ATVTL S+  SR + MEEFLA+P + N E+++SI V     D  +++YK A+RP NSHA INAA   T+
Sbjct:  159 SIAKLIEALSQVKANSEASGANARYMEAMITHCERIANVHVRNVGSIGGNLALAKSKGFVSDLATVLLGANATVTLQSKEKSRKISMEEFLATPEW-NQEIMRSITVPFLDDDQTYNSYKTAIRPVNSHALINAAFLATV 297          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: UPI000D1CBB3C (probable aldehyde oxidase 1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CBB3C)

HSP 1 Score: 82.4 bits (202), Expect = 5.740e-15
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRA-GSRTVGMEEFLASPTFANGELVQSIAV-HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQVTL 558
            L  H  KVA +HVR+AGSV GNL++A+ LGF SD+AT+L+GA A+V + ++  G     +E+F+A+ T+    +++SI +   +  DVRF +Y+A+ RP  N+ AY+NAA  V L
Sbjct:  194 LAEHMRKVATLHVRNAGSVGGNLILAQKLGFDSDIATLLVGAGASVKVVTQKFGESRQSVEDFVAA-TWDGKSILKSICIPSYSKQDVRFDSYRASPRPLGNAVAYVNAAFLVNL 307          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: D8S840_SELML (Uncharacterized protein AO1B-2 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S840_SELML)

HSP 1 Score: 82.4 bits (202), Expect = 5.870e-15
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRA-GSRTVGMEEFLASPTFANGELVQSIAV-HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQVTL 558
            L  H  KVA +HVR+AGSV GNL++A+ LGF SD+AT+L+GA A+V + ++  G     +E+F+A+ T+    +++SI +   +  DVRF +Y+A+ RP  N+ AY+NAA  V L
Sbjct:   81 LAEHMRKVATLHVRNAGSVGGNLILAQKLGFDSDIATLLVGAGASVKVVTQKFGESRQSVEDFVAA-TWDGKSILKSICIPSYSKQDVRFDSYRASPRPLGNAVAYVNAAFLVNL 194          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: A0A7S2MZI8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MZI8_9DINO)

HSP 1 Score: 77.8 bits (190), Expect = 2.300e-14
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  181 AAEKNEARVNNLTALLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRAGSRT-VGMEEFLAS----PTFANGELVQSIAVHLTSPDVRFSTYKAALRPQNSHAYINAAMQVTL 558
            A+E+ +  +  L  L+ HA ++A   +R+ G++ GNL+M K+ GF SDLATIL G  A V +    G    + M++F +     P +A   L++SI V    P   F ++K A+RPQNSHA +NAA +V +
Sbjct:   61 ASEEGKEELAALPVLVEHARRIAGHGIRNWGTIGGNLMMTKAKGFQSDLATILTGVGAKVAMVDSDGKEEELEMDKFYSVEYKLPKYA---LLKSIFVPFLEPGEVFRSFKTAVRPQNSHAIVNAAFRVKM 188          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: D8S842_SELML (Uncharacterized protein AO1C-2 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S842_SELML)

HSP 1 Score: 80.1 bits (196), Expect = 3.210e-14
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRA-GSRTVGMEEFLASPTFANGELVQSIAV--HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQVTL 558
            L  H  KVA +HVR+AGSV GNL++A+ LGF SD+AT+L+GA A+V + ++  G     +E+F+A+ T+    +++SI +  +    +VRF +Y+A+ RP  N+ AY+NAA  V L
Sbjct:   81 LAEHMRKVATLHVRNAGSVGGNLILAQKLGFDSDIATLLVGAGASVKVVTQKFGESRQSVEDFVAA-TWDGKSILKSICIPSYSKQDNVRFDSYRASPRPLGNAVAYVNAAFLVNL 195          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: UPI000D1CACA0 (indole-3-acetaldehyde oxidase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CACA0)

HSP 1 Score: 80.1 bits (196), Expect = 3.430e-14
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRA-GSRTVGMEEFLASPTFANGELVQSIAV--HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQVTL 558
            L  H  KVA +HVR+AGSV GNL++A+ LGF SD+AT+L+GA A+V + ++  G     +E+F+A+ T+    +++SI +  +    +VRF +Y+A+ RP  N+ AY+NAA  V L
Sbjct:  156 LAEHMRKVATLHVRNAGSVGGNLILAQKLGFDSDIATLLVGAGASVKVVTQKFGESRQSVEDFVAA-TWDGKSILKSICIPSYSKQDNVRFDSYRASPRPLGNAVAYVNAAFLVNL 270          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: D8S844_SELML (Uncharacterized protein AO1-2 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S844_SELML)

HSP 1 Score: 80.1 bits (196), Expect = 3.870e-14
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRA-GSRTVGMEEFLASPTFANGELVQSIAV--HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQVTL 558
            L  H  KVA +HVR+AGSV GNL++A+ LGF SD+AT+L+GA A+V + ++  G     +E+F+A+ T+    +++SI +  +    +VRF +Y+A+ RP  N+ AY+NAA  V L
Sbjct:  325 LAEHMRKVATLHVRNAGSVGGNLILAQKLGFDSDIATLLVGAGASVKVVTQKFGESRQSVEDFVAA-TWDGKSILKSICIPSYSKQDNVRFDSYRASPRPLGNAVAYVNAAFLVNL 439          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: A0A3Q7J0Q1_SOLLC (Uncharacterized protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A3Q7J0Q1_SOLLC)

HSP 1 Score: 78.6 bits (192), Expect = 1.420e-13
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRAGSRTVGMEEFLASPTFANGELVQSIAV--------HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQ 549
            L +H  K+A+  VR++ SV GNLVMA+  GF SD+AT+LLG  ATV+L +  G   +  EE L+ P   +  ++ S+ +        H T     F TY+AA RP  N+ AY+NAA Q
Sbjct: 2403 LAYHMEKIASPFVRNSASVGGNLVMAQKNGFPSDIATLLLGLSATVSLMTSHGPENLTWEELLSRPPIDSKTVLLSVCIPFKKDQSSHQTHSRFLFETYRAAPRPHGNALAYVNAAFQ 2520          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: A0A0G4G738_VITBC (FAD-binding PCMH-type domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G738_VITBC)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-13
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVT-------------------LASRAGSRTVGMEEFLASPTFANGE--LVQSIAVHLTSPDVRFSTYKAALRPQNSHAYINAAMQVTL 558
            L  H + VAN HVR+  S AGNLVMA+  GF SDLATIL GA+AT+T                   + ++  +R + + +F+ + +F  G+   V+ + +  +  D    T++AALRPQNSHA +NAA    L
Sbjct:  116 LASHIHMVANWHVRNVASWAGNLVMAREKGFPSDLATILSGADATLTVDLITTTTPTSSSKEEEGSIHAQPETRVMTVLDFVRTESFGEGKRAFVRQLHLPASGADQHMRTFRAALRPQNSHALLNAAFNAKL 248          
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Match: Q9FV25_SOLLC (Aldehyde oxidase n=8 Tax=Solanum TaxID=4107 RepID=Q9FV25_SOLLC)

HSP 1 Score: 75.9 bits (185), Expect = 1.130e-12
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  223 LLHHANKVANVHVRHAGSVAGNLVMAKSLGFLSDLATILLGAEATVTLASRAGSRTVGMEEFLASPTFANGELVQSIAV--------HLTSPDVRFSTYKAALRPQ-NSHAYINAAMQ 549
            L  H  K+A+  VR++ SV GNLVMA+  GF SD+AT+LLG  ATV+L +  G      EE L+ P   +  ++ S+ +        H T     F TY+AA RP  N+ AY+NAA Q
Sbjct:  336 LADHMEKIASPFVRNSASVGGNLVMAQKNGFPSDIATLLLGLSATVSLMTSHGPENHTWEELLSRPPLDSKTVLLSVCIPFKKDQSSHQTHSRFLFETYRAAPRPHGNALAYVNAAFQ 453          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87647.20358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I440_9EUKA4.500e-3049.29Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI000D1CBB3C5.740e-1544.35probable aldehyde oxidase 1 n=1 Tax=Selaginella mo... [more]
D8S840_SELML5.870e-1544.35Uncharacterized protein AO1B-2 n=1 Tax=Selaginella... [more]
A0A7S2MZI8_9DINO2.300e-1438.17Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
D8S842_SELML3.210e-1443.10Uncharacterized protein AO1C-2 n=1 Tax=Selaginella... [more]
UPI000D1CACA03.430e-1443.10indole-3-acetaldehyde oxidase n=1 Tax=Selaginella ... [more]
D8S844_SELML3.870e-1443.10Uncharacterized protein AO1-2 n=3 Tax=Selaginella ... [more]
A0A3Q7J0Q1_SOLLC1.420e-1341.53Uncharacterized protein n=2 Tax=Pentapetalae TaxID... [more]
A0A0G4G738_VITBC1.770e-1338.35FAD-binding PCMH-type domain-containing protein n=... [more]
Q9FV25_SOLLC1.130e-1241.53Aldehyde oxidase n=8 Tax=Solanum TaxID=4107 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87647contigM-pyrifera_M_contig87647:1..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue6.8e-16
Seed eggNOG ortholog227086.JGI_V11_66650
KEGG rclassRC00075,RC00080,RC00143,RC00218,RC00242,RC01073,RC01074,RC02017,RC02199
KEGG koko:K00106,ko:K00157
KEGG ReactionR01709,R01768,R01769,R02103,R02107,R02125,R02657,R03871,R04085,R04904,R07942,R07977,R07978,R07979,R08235,R08349,R08384,R08408
KEGG Pathwayko00230,ko00232,ko00280,ko00350,ko00380,ko00750,ko00760,ko00830,ko00982,ko00983,ko01100,ko01110,ko01120,ko04146,ko04630,map00230,map00232,map00280,map00350,map00380,map00750,map00760,map00830,map00982,map00983,map01100,map01110,map01120,map04146,map04630
KEGG ModuleM00546
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2,1.2.3.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size559
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.479068-CDS-M-pyrifera_M_contig87647:0..5581622816785.479068-CDS-M-pyrifera_M_contig87647:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87647 1..558 -
1692278177.3189669-CDS-M-pyrifera_M_contig87647:0..5581692278177.3189669-CDS-M-pyrifera_M_contig87647:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87647 1..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87647.20358.1prot_M-pyrifera_M_contig87647.20358.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87647 1..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87647.20358.1

>prot_M-pyrifera_M_contig87647.20358.1 ID=prot_M-pyrifera_M_contig87647.20358.1|Name=mRNA_M-pyrifera_M_contig87647.20358.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
GSLWATRPWVSTRTRASVSWSTLAACLSSRLAQLGLRESLLAQXXXXSID
NFIALVNQARAAEKNEARVNNLTALLHHANKVANVHVRHAGSVAGNLVMA
KSLGFLSDLATILLGAEATVTLASRAGSRTVGMEEFLASPTFANGELVQS
IAVHLTSPDVRFSTYKAALRPQNSHAYINAAMQVTL
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mRNA from alignment at M-pyrifera_M_contig87647:1..558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87647.20358.1 ID=mRNA_M-pyrifera_M_contig87647.20358.1|Name=mRNA_M-pyrifera_M_contig87647.20358.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig87647:1..558- (Macrocystis pyrifera P11B4 male)
GGCTCATTGTGGGCAACACGTCCGTGGGTATCTACAAGAACACGGGCGAG CGTGTCTTGGTCGACATTAGCGGCGTGCCTGAGCTCCAGGCTCGCTCAGT TGGGCCTGAGGGAGTCTCTGTTGGCGCAGCTNNNNNNNNNNTCGATCGAT AACTTCATTGCCCTGGTGAACCAGGCCCGCGCCGCCGAGAAGAATGAGGC GCGTGTCAACAACCTCACAGCCCTCCTCCATCACGCCAACAAGGTTGCCA ACGTGCACGTTCGCCATGCCGGAAGTGTGGCCGGCAACCTCGTCATGGCC AAGTCTCTCGGCTTTCTCTCCGACCTGGCCACCATTCTCTTGGGCGCGGA GGCCACTGTGACCCTCGCATCGCGTGCAGGCTCGCGCACAGTGGGTATGG AAGAGTTCCTTGCCTCCCCAACTTTTGCCAACGGCGAGCTCGTCCAGAGC ATCGCCGTCCACCTCACCAGCCCTGACGTGCGATTCTCCACCTACAAGGC AGCCCTGAGGCCCCAGAACAGCCACGCCTACATCAACGCCGCCATGCAGG TGACTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87647:1..558-

>mRNA_M-pyrifera_M_contig87647.20358.1 ID=mRNA_M-pyrifera_M_contig87647.20358.1|Name=mRNA_M-pyrifera_M_contig87647.20358.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig87647:1..558- (Macrocystis pyrifera P11B4 male)
GGCTCATTGTGGGCAACACGTCCGTGGGTATCTACAAGAACACGGGCGAG
CGTGTCTTGGTCGACATTAGCGGCGTGCCTGAGCTCCAGGCTCGCTCAGT
TGGGCCTGAGGGAGTCTCTGTTGGCGCAGCTNNNNNNNNNNTCGATCGAT
AACTTCATTGCCCTGGTGAACCAGGCCCGCGCCGCCGAGAAGAATGAGGC
GCGTGTCAACAACCTCACAGCCCTCCTCCATCACGCCAACAAGGTTGCCA
ACGTGCACGTTCGCCATGCCGGAAGTGTGGCCGGCAACCTCGTCATGGCC
AAGTCTCTCGGCTTTCTCTCCGACCTGGCCACCATTCTCTTGGGCGCGGA
GGCCACTGTGACCCTCGCATCGCGTGCAGGCTCGCGCACAGTGGGTATGG
AAGAGTTCCTTGCCTCCCCAACTTTTGCCAACGGCGAGCTCGTCCAGAGC
ATCGCCGTCCACCTCACCAGCCCTGACGTGCGATTCTCCACCTACAAGGC
AGCCCTGAGGCCCCAGAACAGCCACGCCTACATCAACGCCGCCATGCAGG
TGACTCTTGGCTCATTGTGGGCAACACGTCCGTGGGTATCTACAAGAACA
CGGGCGAGCGTGTCTTGGTCGACATTAGCGGCGTGCCTGAGCTCCAGGCT
CGCTCAGTTGGGCCTGAGGGAGTCTCTGTTGGCGCAGCTNNNNNNNNNNT
CGATCGATAACTTCATTGCCCTGGTGAACCAGGCCCGCGCCGCCGAGAAG
AATGAGGCGCGTGTCAACAACCTCACAGCCCTCCTCCATCACGCCAACAA
GGTTGCCAACGTGCACGTTCGCCATGCCGGAAGTGTGGCCGGCAACCTCG
TCATGGCCAAGTCTCTCGGCTTTCTCTCCGACCTGGCCACCATTCTCTTG
GGCGCGGAGGCCACTGTGACCCTCGCATCGCGTGCAGGCTCGCGCACAGT
GGGTATGGAAGAGTTCCTTGCCTCCCCAACTTTTGCCAACGGCGAGCTCG
TCCAGAGCATCGCCGTCCACCTCACCAGCCCTGACGTGCGATTCTCCACC
TACAAGGCAGCCCTGAGGCCCCAGAACAGCCACGCCTACATCAACGCCGC
CATGCAGGTGACTCTT
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