mRNA_M-pyrifera_M_contig8764.20353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8764.20353.1
Unique NamemRNA_M-pyrifera_M_contig8764.20353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8764.20353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8764contigM-pyrifera_M_contig8764:3352..3940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8764.20353.1prot_M-pyrifera_M_contig8764.20353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8764 3571..3876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.2810729-UTR-M-pyrifera_M_contig8764:3351..35701622816785.2810729-UTR-M-pyrifera_M_contig8764:3351..3570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8764 3352..3570 +
1692278177.1762962-UTR-M-pyrifera_M_contig8764:3351..35701692278177.1762962-UTR-M-pyrifera_M_contig8764:3351..3570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8764 3352..3570 +
1622816785.3034694-UTR-M-pyrifera_M_contig8764:3876..39401622816785.3034694-UTR-M-pyrifera_M_contig8764:3876..3940Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8764 3877..3940 +
1692278177.2070408-UTR-M-pyrifera_M_contig8764:3876..39401692278177.2070408-UTR-M-pyrifera_M_contig8764:3876..3940Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8764 3877..3940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.2919178-CDS-M-pyrifera_M_contig8764:3570..38761622816785.2919178-CDS-M-pyrifera_M_contig8764:3570..3876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8764 3571..3876 +
1692278177.1896727-CDS-M-pyrifera_M_contig8764:3570..38761692278177.1896727-CDS-M-pyrifera_M_contig8764:3570..3876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8764 3571..3876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8764.20353.1

>prot_M-pyrifera_M_contig8764.20353.1 ID=prot_M-pyrifera_M_contig8764.20353.1|Name=mRNA_M-pyrifera_M_contig8764.20353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MGSVECNQSRPTVVNSTSRTAEQSQRKGGKLTHPEIRYTNRKPNHPCHAS
EVLKVYTREKLPKKHYHQPLSPPSMQRNYYHEANRRQYSTPAPKSDSRRI
Y*
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mRNA from alignment at M-pyrifera_M_contig8764:3352..3940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8764.20353.1 ID=mRNA_M-pyrifera_M_contig8764.20353.1|Name=mRNA_M-pyrifera_M_contig8764.20353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=589bp|location=Sequence derived from alignment at M-pyrifera_M_contig8764:3352..3940+ (Macrocystis pyrifera P11B4 male)
GCATGATTAAAAGCATGGTGTCTCATTTTATAGCTCGTTTCTCGCGTCCC
ATGCGAATCTGCGGCCGAGCATTGACAATCGAGCATCGAACAAACTAGGT
ACAACTAACTAGGTTTTAGTGCAGGCGCCAAAAAATACGCGGCCTCTCTA
GGCTATCCAATTTCCTACCTCCCTTCACCCAGGCTTTCACTCCGCCGCAG
CGACTGCTGCTACTGTTACATGGGAAGTGTAGAATGCAACCAAAGTAGAC
CTACTGTTGTTAACAGCACCTCACGTACTGCCGAACAGTCGCAGCGCAAA
GGAGGGAAGCTCACACATCCGGAGATACGGTACACGAACAGAAAACCAAA
TCACCCCTGTCACGCAAGTGAGGTCCTCAAGGTATATACCCGAGAAAAAC
TCCCAAAAAAACACTATCATCAACCACTATCACCACCATCGATGCAACGT
AACTATTACCATGAAGCAAACCGCAGACAGTATTCGACGCCAGCGCCAAA
ATCAGACAGCCGACGGATCTACTAATTACCGAGGAAACAAATAAAAAAAC
AGCAACTCTTCAAGGCTTATGTCGCGACCCGCTCGAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8764:3352..3940+

>mRNA_M-pyrifera_M_contig8764.20353.1 ID=mRNA_M-pyrifera_M_contig8764.20353.1|Name=mRNA_M-pyrifera_M_contig8764.20353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig8764:3352..3940+ (Macrocystis pyrifera P11B4 male)
ATGGGAAGTGTAGAATGCAACCAAAGTAGACCTACTGTTGTTAACAGCAC
CTCACGTACTGCCGAACAGTCGCAGCGCAAAGGAGGGAAGCTCACACATC
CGGAGATACGGTACACGAACAGAAAACCAAATCACCCCTGTCACGCAAGT
GAGGTCCTCAAGGTATATACCCGAGAAAAACTCCCAAAAAAACACTATCA
TCAACCACTATCACCACCATCGATGCAACGTAACTATTACCATGAAGCAA
ACCGCAGACAGTATTCGACGCCAGCGCCAAAATCAGACAGCCGACGGATC
TACTAAATGGGAAGTGTAGAATGCAACCAAAGTAGACCTACTGTTGTTAA
CAGCACCTCACGTACTGCCGAACAGTCGCAGCGCAAAGGAGGGAAGCTCA
CACATCCGGAGATACGGTACACGAACAGAAAACCAAATCACCCCTGTCAC
GCAAGTGAGGTCCTCAAGGTATATACCCGAGAAAAACTCCCAAAAAAACA
CTATCATCAACCACTATCACCACCATCGATGCAACGTAACTATTACCATG
AAGCAAACCGCAGACAGTATTCGACGCCAGCGCCAAAATCAGACAGCCGA
CGGATCTACTAA
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