mRNA_M-pyrifera_M_contig87598.20346.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A2E7KAT2_9PLAN (GntR family transcriptional regulator n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAT2_9PLAN) HSP 1 Score: 210 bits (535), Expect = 4.340e-67 Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 318 NQ+RNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL Sbjct: 134 NQSRNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 239
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A518A463_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A463_9PLAN) HSP 1 Score: 177 bits (450), Expect = 2.130e-54 Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 1 Query: 1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVD 312 NQARN+AAV++ RIDDLVKIDAEFHQL+C FFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRA+ES+DEH+AILDAL +G A++LVYDHLEDGLRRFRP + Sbjct: 120 NQARNRAAVKQNRIDDLVKIDAEFHQLVCRFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRATESYDEHEAILDALVAGYGALAAELVYDHLEDGLRRFRPAE 223
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A517ZLH2_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZLH2_9PLAN) HSP 1 Score: 84.3 bits (207), Expect = 7.210e-18 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 52 VKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPV 309 VK D +FH L+C F GN E VM RL D+V+ V++RI +++P R +E+++EH I A+ G E A+Q + HL++GL++F P Sbjct: 133 VKNDTDFHLLLCEFHGNQEFAKVMHRLRDRVFQVVFRIVKQFPNRITETYEEHHEIATAIFDGNGELAAQQLVVHLQNGLKQFIPA 218
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: UPI001AE93C9C (GntR family transcriptional regulator n=1 Tax=Ammoniphilus resinae TaxID=861532 RepID=UPI001AE93C9C) HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288 N A K + E+ + K DAEFHQ + +GN+EII++M+++ D++ + R+ +K R +D+H IL+ + G E+AS+ + HLE G Sbjct: 110 NLAEQKRFLDEKNDVEFTKKDAEFHQELAAIYGNEEIIEMMEKIQDRLQLLALRVFRKDSLRLQRYYDDHVEILELISKGSGEEASRKMIQHLEIG 205
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: UPI0020114EEE (GntR family transcriptional regulator n=1 Tax=Alicyclobacillus mengziensis TaxID=2931921 RepID=UPI0020114EEE) HSP 1 Score: 63.2 bits (152), Expect = 7.970e-10 Identity = 26/76 (34.21%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 61 DAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288 D+EFH+ + +GN E++ V+ R+ D++YH+ ++ +K R S+ +H+AI +A+ + KA+ L+ DHL G Sbjct: 134 DSEFHRSLAEMYGNTEMLSVIDRIQDQIYHIAMQVLRKDRNRVHVSYADHRAIYEAIVEHDGSKAATLMVDHLRFG 209
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A0C6PDX3_BORBO (Putative transcriptional regulator n=12 Tax=Bordetella TaxID=517 RepID=A0A0C6PDX3_BORBO) HSP 1 Score: 61.2 bits (147), Expect = 6.200e-9 Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1 Query: 25 VREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLR 294 VRE D ++D FH + GN+EI+ +++RL DK++ + R+ KYP R + +H+ I +A++ G+A++A + HL G R Sbjct: 148 VREGAYLDYHQLDMAFHLSLAQIHGNEEIVQMLERLRDKMHRLSTRLHTKYPGRLGANVQQHREIFEAIKDGDAKRAQNQMRAHLVWGKR 237
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A846XK86_9NOCA (GntR family transcriptional regulator n=1 Tax=Nocardia speluncae TaxID=419477 RepID=A0A846XK86_9NOCA) HSP 1 Score: 59.7 bits (143), Expect = 1.590e-8 Identity = 31/94 (32.98%), Postives = 60/94 (63.83%), Query Frame = 1 Query: 22 AVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFR 303 AVR R+D+L ++++ FH+++ G+ + ++ +L K+ V Y + + P+RA++S+DEH+ I ALE+G+A++A LV +H+ +R Sbjct: 112 AVRTGRLDELTRLNSRFHEVLAEASGSTLLTQLITQLGWKIAWV-YAV--ELPRRANDSWDEHEQICAALEAGDADRARNLVTEHIGHATTAYR 202
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A1G6IC41_9BURK (DNA-binding transcriptional regulator, GntR family n=1 Tax=Cupriavidus sp. YR651 TaxID=1855315 RepID=A0A1G6IC41_9BURK) HSP 1 Score: 59.7 bits (143), Expect = 2.740e-8 Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1 Query: 49 LVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288 + ++D FH I H GN E V Q+++D++ +I R+ Y +R S ++DEH AILDAL++ + +A L+ H+EDG Sbjct: 168 VARLDEAFHLAIVHAAGNPESAAVHQQVTDRI-RIIRRLDFAYGERISLTYDEHAAILDALDACDGPRAVALLSTHIEDG 246
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A0F9YDZ1_9ZZZZ (HTH gntR-type domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9YDZ1_9ZZZZ) HSP 1 Score: 58.5 bits (140), Expect = 5.130e-8 Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 22 AVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 318 A+ E+R D +++ FH+ I H + DV L K H++ + T K ++S DEH I+ A+E G+AE A + ++H+++GL R+ +SL Sbjct: 129 AISEERAQDYYQMNLAFHEYILHVANHKRAADVYDDLV-KDSHLVRKFTLKNQSAMTQSNDEHDKIVSAIEKGDAEAAYKAGFEHVKEGLVRWLSKESL 226
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A7C4UV09_9CHLR (GntR family transcriptional regulator n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4UV09_9CHLR) HSP 1 Score: 56.6 bits (135), Expect = 2.090e-7 Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 1 Query: 40 IDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFR 303 ++ L++ID +FH + GN + DV+ L DK ++R+ + S + H+ +LDALE G A+KA++++ +H+ D RR R Sbjct: 120 VEKLMEIDRQFHLTVAEAAGNKHLADVIVSLYDKSLR-LWRLALTRVGSIASSIERHEELLDALEYGNADKAAEIMREHVRDFHRRMR 206 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig87598.20346.1 >prot_M-pyrifera_M_contig87598.20346.1 ID=prot_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHback to top mRNA from alignment at M-pyrifera_M_contig87598:1..321+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig87598.20346.1 ID=mRNA_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:1..321+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig87598:1..321+ >mRNA_M-pyrifera_M_contig87598.20346.1 ID=mRNA_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:1..321+ (Macrocystis pyrifera P11B4 male)back to top |