mRNA_M-pyrifera_M_contig87598.20346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87598.20346.1
Unique NamemRNA_M-pyrifera_M_contig87598.20346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A2E7KAT2_9PLAN (GntR family transcriptional regulator n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAT2_9PLAN)

HSP 1 Score: 210 bits (535), Expect = 4.340e-67
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 318
            NQ+RNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL
Sbjct:  134 NQSRNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 239          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A518A463_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A463_9PLAN)

HSP 1 Score: 177 bits (450), Expect = 2.130e-54
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 1
Query:    1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVD 312
            NQARN+AAV++ RIDDLVKIDAEFHQL+C FFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRA+ES+DEH+AILDAL +G    A++LVYDHLEDGLRRFRP +
Sbjct:  120 NQARNRAAVKQNRIDDLVKIDAEFHQLVCRFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRATESYDEHEAILDALVAGYGALAAELVYDHLEDGLRRFRPAE 223          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A517ZLH2_9PLAN (Putative HTH-type transcriptional regulator YdfH n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZLH2_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 7.210e-18
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   52 VKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPV 309
            VK D +FH L+C F GN E   VM RL D+V+ V++RI +++P R +E+++EH  I  A+  G  E A+Q +  HL++GL++F P 
Sbjct:  133 VKNDTDFHLLLCEFHGNQEFAKVMHRLRDRVFQVVFRIVKQFPNRITETYEEHHEIATAIFDGNGELAAQQLVVHLQNGLKQFIPA 218          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: UPI001AE93C9C (GntR family transcriptional regulator n=1 Tax=Ammoniphilus resinae TaxID=861532 RepID=UPI001AE93C9C)

HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288
            N A  K  + E+   +  K DAEFHQ +   +GN+EII++M+++ D++  +  R+ +K   R    +D+H  IL+ +  G  E+AS+ +  HLE G
Sbjct:  110 NLAEQKRFLDEKNDVEFTKKDAEFHQELAAIYGNEEIIEMMEKIQDRLQLLALRVFRKDSLRLQRYYDDHVEILELISKGSGEEASRKMIQHLEIG 205          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: UPI0020114EEE (GntR family transcriptional regulator n=1 Tax=Alicyclobacillus mengziensis TaxID=2931921 RepID=UPI0020114EEE)

HSP 1 Score: 63.2 bits (152), Expect = 7.970e-10
Identity = 26/76 (34.21%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   61 DAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288
            D+EFH+ +   +GN E++ V+ R+ D++YH+  ++ +K   R   S+ +H+AI +A+   +  KA+ L+ DHL  G
Sbjct:  134 DSEFHRSLAEMYGNTEMLSVIDRIQDQIYHIAMQVLRKDRNRVHVSYADHRAIYEAIVEHDGSKAATLMVDHLRFG 209          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A0C6PDX3_BORBO (Putative transcriptional regulator n=12 Tax=Bordetella TaxID=517 RepID=A0A0C6PDX3_BORBO)

HSP 1 Score: 61.2 bits (147), Expect = 6.200e-9
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   25 VREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLR 294
            VRE    D  ++D  FH  +    GN+EI+ +++RL DK++ +  R+  KYP R   +  +H+ I +A++ G+A++A   +  HL  G R
Sbjct:  148 VREGAYLDYHQLDMAFHLSLAQIHGNEEIVQMLERLRDKMHRLSTRLHTKYPGRLGANVQQHREIFEAIKDGDAKRAQNQMRAHLVWGKR 237          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A846XK86_9NOCA (GntR family transcriptional regulator n=1 Tax=Nocardia speluncae TaxID=419477 RepID=A0A846XK86_9NOCA)

HSP 1 Score: 59.7 bits (143), Expect = 1.590e-8
Identity = 31/94 (32.98%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   22 AVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFR 303
            AVR  R+D+L ++++ FH+++    G+  +  ++ +L  K+  V Y +  + P+RA++S+DEH+ I  ALE+G+A++A  LV +H+      +R
Sbjct:  112 AVRTGRLDELTRLNSRFHEVLAEASGSTLLTQLITQLGWKIAWV-YAV--ELPRRANDSWDEHEQICAALEAGDADRARNLVTEHIGHATTAYR 202          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A1G6IC41_9BURK (DNA-binding transcriptional regulator, GntR family n=1 Tax=Cupriavidus sp. YR651 TaxID=1855315 RepID=A0A1G6IC41_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 2.740e-8
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   49 LVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDG 288
            + ++D  FH  I H  GN E   V Q+++D++  +I R+   Y +R S ++DEH AILDAL++ +  +A  L+  H+EDG
Sbjct:  168 VARLDEAFHLAIVHAAGNPESAAVHQQVTDRI-RIIRRLDFAYGERISLTYDEHAAILDALDACDGPRAVALLSTHIEDG 246          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A0F9YDZ1_9ZZZZ (HTH gntR-type domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9YDZ1_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 5.130e-8
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   22 AVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFRPVDSL 318
            A+ E+R  D  +++  FH+ I H   +    DV   L  K  H++ + T K     ++S DEH  I+ A+E G+AE A +  ++H+++GL R+   +SL
Sbjct:  129 AISEERAQDYYQMNLAFHEYILHVANHKRAADVYDDLV-KDSHLVRKFTLKNQSAMTQSNDEHDKIVSAIEKGDAEAAYKAGFEHVKEGLVRWLSKESL 226          
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Match: A0A7C4UV09_9CHLR (GntR family transcriptional regulator n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4UV09_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 2.090e-7
Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   40 IDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYHVIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRFR 303
            ++ L++ID +FH  +    GN  + DV+  L DK    ++R+        + S + H+ +LDALE G A+KA++++ +H+ D  RR R
Sbjct:  120 VEKLMEIDRQFHLTVAEAAGNKHLADVIVSLYDKSLR-LWRLALTRVGSIASSIERHEELLDALEYGNADKAAEIMREHVRDFHRRMR 206          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87598.20346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KAT2_9PLAN4.340e-6799.06GntR family transcriptional regulator n=2 Tax=Gime... [more]
A0A518A463_9PLAN2.130e-5481.73Putative HTH-type transcriptional regulator YdfH n... [more]
A0A517ZLH2_9PLAN7.210e-1843.02Putative HTH-type transcriptional regulator YdfH n... [more]
UPI001AE93C9C1.030e-1034.38GntR family transcriptional regulator n=1 Tax=Ammo... [more]
UPI0020114EEE7.970e-1034.21GntR family transcriptional regulator n=1 Tax=Alic... [more]
A0A0C6PDX3_BORBO6.200e-933.33Putative transcriptional regulator n=12 Tax=Bordet... [more]
A0A846XK86_9NOCA1.590e-832.98GntR family transcriptional regulator n=1 Tax=Noca... [more]
A0A1G6IC41_9BURK2.740e-838.75DNA-binding transcriptional regulator, GntR family... [more]
A0A0F9YDZ1_9ZZZZ5.130e-832.32HTH gntR-type domain-containing protein n=2 Tax=ro... [more]
A0A7C4UV09_9CHLR2.090e-732.95GntR family transcriptional regulator n=1 Tax=Anae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87598contigM-pyrifera_M_contig87598:1..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog1396418.BATQ01000166_gene1833
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcriptional regulator
EggNOG OGsCOG1802@1,COG1802@2
COG Functional cat.K
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.7216094-CDS-M-pyrifera_M_contig87598:0..3211622816784.7216094-CDS-M-pyrifera_M_contig87598:0..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87598 1..321 +
1692278176.7757142-CDS-M-pyrifera_M_contig87598:0..3211692278176.7757142-CDS-M-pyrifera_M_contig87598:0..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87598 1..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87598.20346.1prot_M-pyrifera_M_contig87598.20346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87598 1..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87598.20346.1

>prot_M-pyrifera_M_contig87598.20346.1 ID=prot_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
NQARNKAAVREQRIDDLVKIDAEFHQLICHFFGNDEIIDVMQRLSDKVYH
VIYRITQKYPQRASESFDEHQAILDALESGEAEKASQLVYDHLEDGLRRF
RPVDSL*
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mRNA from alignment at M-pyrifera_M_contig87598:1..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87598.20346.1 ID=mRNA_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:1..321+ (Macrocystis pyrifera P11B4 male)
AATCAGGCGCGAAACAAAGCAGCCGTCAGAGAGCAGCGGATTGACGATCT GGTGAAGATCGACGCCGAGTTTCATCAACTGATCTGCCATTTCTTTGGGA ACGATGAAATCATCGATGTGATGCAGCGGCTCAGTGACAAAGTCTATCAT GTGATTTATCGGATTACGCAGAAGTACCCCCAGCGCGCCAGTGAATCGTT TGACGAACATCAGGCGATTCTGGATGCCCTGGAATCCGGAGAGGCCGAGA AGGCCTCGCAGCTGGTCTATGATCATCTGGAAGATGGTTTACGTCGGTTT CGACCAGTCGATTCCCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87598:1..321+

>mRNA_M-pyrifera_M_contig87598.20346.1 ID=mRNA_M-pyrifera_M_contig87598.20346.1|Name=mRNA_M-pyrifera_M_contig87598.20346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:1..321+ (Macrocystis pyrifera P11B4 male)
AATCAGGCGCGAAACAAAGCAGCCGTCAGAGAGCAGCGGATTGACGATCT
GGTGAAGATCGACGCCGAGTTTCATCAACTGATCTGCCATTTCTTTGGGA
ACGATGAAATCATCGATGTGATGCAGCGGCTCAGTGACAAAGTCTATCAT
GTGATTTATCGGATTACGCAGAAGTACCCCCAGCGCGCCAGTGAATCGTT
TGACGAACATCAGGCGATTCTGGATGCCCTGGAATCCGGAGAGGCCGAGA
AGGCCTCGCAGCTGGTCTATGATCATCTGGAAGATGGTTTACGTCGGTTT
CGACCAGTCGATTCCCTCTAGAATCAGGCGCGAAACAAAGCAGCCGTCAG
AGAGCAGCGGATTGACGATCTGGTGAAGATCGACGCCGAGTTTCATCAAC
TGATCTGCCATTTCTTTGGGAACGATGAAATCATCGATGTGATGCAGCGG
CTCAGTGACAAAGTCTATCATGTGATTTATCGGATTACGCAGAAGTACCC
CCAGCGCGCCAGTGAATCGTTTGACGAACATCAGGCGATTCTGGATGCCC
TGGAATCCGGAGAGGCCGAGAAGGCCTCGCAGCTGGTCTATGATCATCTG
GAAGATGGTTTACGTCGGTTTCGACCAGTCGATTCCCTCTAG
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