mRNA_M-pyrifera_M_contig87588.20344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87588.20344.1
Unique NamemRNA_M-pyrifera_M_contig87588.20344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A5J4XRF7_9CHLO (tRNA dihydrouridine synthase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XRF7_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 1.900e-33
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAMMD 357
            VAPMM+ T + FR+LCR++S+ T LYTEMVV  TL  +P+   R L  P  QHP+  QLGG++P  L  A +     GYDEINLNCGCPS +VAG G FGAA+ML+P+  A+C +AM +
Sbjct:   64 VAPMMDWTDLHFRQLCRLISKQTWLYTEMVVDQTLLHNPDTD-RFLWFPPEQHPIVCQLGGSNPKTLAAAAKVVAKYGYDEINLNCGCPSERVAGAGCFGAAMMLQPQLVAQCCQAMQE 181          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A1D1ZTT2_AUXPR (Dus domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZTT2_AUXPR)

HSP 1 Score: 129 bits (325), Expect = 7.730e-33
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAM 351
            VAPMM+ T + +R+L R++SRHT LYTEMVV  TL  +P+   R L  P  QHP+  QLGG+DP +L  A R     GYDEINLN GCPS +VAG G FGAALMLRP+  ARC  A+
Sbjct:   70 VAPMMDWTDLHYRQLARMISRHTWLYTEMVVDKTLIHNPDHD-RFLWFPPEQHPIVCQLGGSDPDELAAAARIVAGYGYDEINLNVGCPSDRVAGAGCFGAALMLRPELVARCCAAI 185          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A383V9N4_TETOB (Dus domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V9N4_TETOB)

HSP 1 Score: 129 bits (324), Expect = 8.030e-33
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAMMD 357
            +APMME T V +R+L R+LS+HT L+TEMVV  T+  H     + L  P  QHP+ LQLGG+DP  L  A + A   GYDEINLNCGCPS +VAG G FGAALML+P+  A C+ A+  
Sbjct:   32 IAPMMEWTDVHYRQLARLLSKHTWLWTEMVVDKTI-IHTPLLDKHLWFPPEQHPIVLQLGGSDPALLLQAAKVAATYGYDEINLNCGCPSDRVAGAGCFGAALMLQPELVADCMAAIQQ 149          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: C1FGA1_MICCC (Dus domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FGA1_MICCC)

HSP 1 Score: 127 bits (318), Expect = 1.310e-32
Identity = 71/121 (58.68%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWF--HPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAMMD 357
            VAPMM+ TT  FR LCR+LSRHT LYTEM V  TL    HP    R L  P + HP  LQLGG+DP  +  A   A   GYDEINLNCGCPS KVAGKGAFGAALML P+     + AM +
Sbjct:    9 VAPMMDYTTAHFRHLCRLLSRHTWLYTEMEVDQTLVHTDHPR-LDRYLDFPTATHPSVLQLGGSDPETMARATAVAAPYGYDEINLNCGCPSPKVAGKGAFGAALMLEPELVRDVVAAMRE 128          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A061R677_9CHLO (tRNA-dihydrouridine synthase A n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R677_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 2.220e-32
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAM 351
            VAPMM+ T V +R+L R+L++HT L+TEMVV STL        R L  PK Q P+ LQLGG++P +L  A   AL  GYDEINLNCGCPS +VAG G FGA+LML P+  A C  AM
Sbjct:   68 VAPMMDWTDVYWRQLARMLTKHTWLWTEMVVDSTLIHQHPNNDRFLWFPKEQRPLVLQLGGSEPEKLARAAELALPYGYDEINLNCGCPSDRVAGAGCFGASLMLEPERVAACCAAM 184          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A250XK34_9CHLO (Dus domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XK34_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 2.630e-32
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAMMD 357
            VAPMM+CT + +R+L RI+S+ T L+TEMVV  T+  H     + L  P  QHP+  QLGG+DP  L  AV+  +  GYDEINLNCGCPS +VAG G FGA+LML+P   A C++AM D
Sbjct:   12 VAPMMDCTDLHYRQLARIISKRTWLWTEMVVDKTI-LHTPFLDKFLWFPPEQHPIVCQLGGSDPATLAAAVKKVVEYGYDEINLNCGCPSDRVAGAGCFGASLMLQPDLVASCMKAMAD 129          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A7S1T2X4_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T2X4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 3.450e-32
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAM 351
            VAPMM+ T + +R+L R+LS+HT L+TEMVV  TL        + L  P+ QHP+ LQLGG+DP  L  A   AL  GYDEINLNCGCPS +VAG G FGAALML P+    C  AM
Sbjct:  101 VAPMMDWTDLHWRQLARMLSKHTWLWTEMVVDLTLVHQDPNLDKFLWFPEEQHPIVLQLGGSDPETLAKAAELALPYGYDEINLNCGCPSDRVAGSGCFGAALMLDPQRVGACCAAM 217          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A7S3R3J5_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R3J5_DUNTE)

HSP 1 Score: 127 bits (318), Expect = 1.010e-31
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAMMD 357
            VAPMM+ T V +R+L R++SRHT L+TEMVV  T+   P    R L  PK Q P+ LQ+GG++P  L  A R A+  GYDEINLNCGCPS +VAG G FGA+LML P+    C+ AM D
Sbjct:   53 VAPMMDWTDVHYRQLARLISRHTWLWTEMVVDKTILNSPHPD-RFLWFPKEQRPLVLQVGGSEPESLAAAARVAIEYGYDEINLNCGCPSDRVAGAGCFGASLMLEPELVGDCMRAMGD 170          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A2Z7BEP8_9LAMI (tRNA-dihydrouridine synthase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BEP8_9LAMI)

HSP 1 Score: 124 bits (310), Expect = 1.230e-31
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAM 351
            VAPMMECT   +R L R LS+H  LYTEM+   T+ F   +  + L     QHP+ALQ+GGND   L  A + A   GYDEINLNCGCPSS+VAGKG FG  LML PK  A  +  +
Sbjct:   13 VAPMMECTNNYYRTLARFLSKHAWLYTEMIAAETIVFQKGDLDKFLGFGPEQHPIALQIGGNDLDNLAKATQLANSYGYDEINLNCGCPSSRVAGKGCFGVRLMLDPKFVANAMSVI 129          
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Match: A0A8J9SR70_9CHLO (tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SR70_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 1.880e-31
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 VAPMMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQHPVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAALMLRPKHTARCLEAM 351
            VAPMM+ T V +R++ R++S+HT LYTEMVV  T+  H     R L  P  Q P+  QLGG+DP +L  A +     GYDEINLNCGCPS +VAG G FGA+LML+P   A C  AM
Sbjct:   15 VAPMMDWTDVHYRQMARLISKHTWLYTEMVVDQTI-IHNPNTDRFLWFPPEQRPIVCQLGGSDPAKLAAAAKIVARYGYDEINLNCGCPSDRVAGAGCFGASLMLQPDTVAECCSAM 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87588.20344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4XRF7_9CHLO1.900e-3353.78tRNA dihydrouridine synthase n=1 Tax=Trebouxia sp.... [more]
A0A1D1ZTT2_AUXPR7.730e-3357.26Dus domain-containing protein n=3 Tax=Auxenochlore... [more]
A0A383V9N4_TETOB8.030e-3354.62Dus domain-containing protein n=1 Tax=Tetradesmus ... [more]
C1FGA1_MICCC1.310e-3258.68Dus domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A061R677_9CHLO2.220e-3256.41tRNA-dihydrouridine synthase A n=1 Tax=Tetraselmis... [more]
A0A250XK34_9CHLO2.630e-3253.78Dus domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A7S1T2X4_9CHLO3.450e-3255.56Hypothetical protein n=2 Tax=Tetraselmis chuii Tax... [more]
A0A7S3R3J5_DUNTE1.010e-3154.62Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A2Z7BEP8_9LAMI1.230e-3152.99tRNA-dihydrouridine synthase n=1 Tax=Dorcoceras hy... [more]
A0A8J9SR70_9CHLO1.880e-3152.99tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Cocco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87588contigM-pyrifera_M_contig87588:445..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score126.3
Seed ortholog evalue9.1e-27
Seed eggNOG ortholog3075.A0A087SL97
KEGG koko:K05539
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dihydrouridine synthase (Dus)
EggNOG OGs34HKE@3041,37PYT@33090,COG0042@1,KOG2335@2759
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size357
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.5939064-CDS-M-pyrifera_M_contig87588:444..7921622816784.5939064-CDS-M-pyrifera_M_contig87588:444..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87588 445..792 -
1692278176.6733134-CDS-M-pyrifera_M_contig87588:444..7921692278176.6733134-CDS-M-pyrifera_M_contig87588:444..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87588 445..792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.6057127-UTR-M-pyrifera_M_contig87588:792..8011622816784.6057127-UTR-M-pyrifera_M_contig87588:792..801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87588 793..801 -
1692278176.6848676-UTR-M-pyrifera_M_contig87588:792..8011692278176.6848676-UTR-M-pyrifera_M_contig87588:792..801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87588 793..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87588.20344.1prot_M-pyrifera_M_contig87588.20344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87588 445..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87588.20344.1

>prot_M-pyrifera_M_contig87588.20344.1 ID=prot_M-pyrifera_M_contig87588.20344.1|Name=mRNA_M-pyrifera_M_contig87588.20344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MMECTTVPFRELCRILSRHTKLYTEMVVCSTLWFHPEEAFRRLVVPKSQH
PVALQLGGNDPTQLRLAVRFALLAGYDEINLNCGCPSSKVAGKGAFGAAL
MLRPKHTARCLEAMMD
back to top

mRNA from alignment at M-pyrifera_M_contig87588:445..801-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87588.20344.1 ID=mRNA_M-pyrifera_M_contig87588.20344.1|Name=mRNA_M-pyrifera_M_contig87588.20344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig87588:445..801- (Macrocystis pyrifera P11B4 male)
GTGGCACCGATGATGGAATGCACGACGGTTCCGTTTCGAGAGCTGTGTCG CATTCTGAGCCGCCACACCAAGTTGTACACGGAGATGGTGGTGTGTTCGA CGCTCTGGTTCCACCCCGAGGAGGCGTTTCGGCGGCTAGTGGTCCCCAAA TCGCAGCATCCCGTGGCTCTGCAATTGGGAGGCAACGATCCCACGCAATT GCGCCTCGCCGTTCGATTCGCTCTTTTAGCCGGCTACGACGAAATCAACC TCAACTGCGGCTGCCCCTCCTCCAAAGTAGCAGGCAAAGGGGCGTTTGGA GCGGCCCTCATGCTGCGACCAAAACACACAGCGCGCTGTCTCGAGGCCAT GATGGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87588:445..801-

>mRNA_M-pyrifera_M_contig87588.20344.1 ID=mRNA_M-pyrifera_M_contig87588.20344.1|Name=mRNA_M-pyrifera_M_contig87588.20344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig87588:445..801- (Macrocystis pyrifera P11B4 male)
ATGATGGAATGCACGACGGTTCCGTTTCGAGAGCTGTGTCGCATTCTGAG
CCGCCACACCAAGTTGTACACGGAGATGGTGGTGTGTTCGACGCTCTGGT
TCCACCCCGAGGAGGCGTTTCGGCGGCTAGTGGTCCCCAAATCGCAGCAT
CCCGTGGCTCTGCAATTGGGAGGCAACGATCCCACGCAATTGCGCCTCGC
CGTTCGATTCGCTCTTTTAGCCGGCTACGACGAAATCAACCTCAACTGCG
GCTGCCCCTCCTCCAAAGTAGCAGGCAAAGGGGCGTTTGGAGCGGCCCTC
ATGCTGCGACCAAAACACACAGCGCGCTGTCTCGAGGCCATGATGGACAT
GATGGAATGCACGACGGTTCCGTTTCGAGAGCTGTGTCGCATTCTGAGCC
GCCACACCAAGTTGTACACGGAGATGGTGGTGTGTTCGACGCTCTGGTTC
CACCCCGAGGAGGCGTTTCGGCGGCTAGTGGTCCCCAAATCGCAGCATCC
CGTGGCTCTGCAATTGGGAGGCAACGATCCCACGCAATTGCGCCTCGCCG
TTCGATTCGCTCTTTTAGCCGGCTACGACGAAATCAACCTCAACTGCGGC
TGCCCCTCCTCCAAAGTAGCAGGCAAAGGGGCGTTTGGAGCGGCCCTCAT
GCTGCGACCAAAACACACAGCGCGCTGTCTCGAGGCCATGATGGAC
back to top