mRNA_M-pyrifera_M_contig87584.20342.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87584.20342.1
Unique NamemRNA_M-pyrifera_M_contig87584.20342.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87584.20342.1 vs. uniprot
Match: A0A7S1UAC9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAC9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.360e-23
Identity = 69/204 (33.82%), Postives = 111/204 (54.41%), Query Frame = 1 
Query:    1 FKAHLRLQKFPSALSDLDAALSLDAGLRVARTQRAGLLLSLGRCAESVSAFEELIRLDPAVAAKSGSDVGKKLPEARTCAEALHLADRAEGRGQWGVVREQLGRALESQRAHLSAPLHVRRARAGLALGLAQEALLDSAAALRLDAGIVEAYECRGQALYLLGEVGAAVSMAQQGLRRDPEHSGCMGLHKRLRRLQKLEQEGDR 612
            F+ + R +K+  AL+DL+ AL +    +    QRA +L  +G+C  S++ +E+L +LDP        D+G+ +P  R CA+    A  A+  G W  V + L  A+E   A  +  +H+ RA A   +G   EA+ D    L++    ++A + RG   Y LGE   A++  ++GL+RDPEH GC   HK+LR+L K   +G +
Sbjct:   73 FRVYQRQRKYREALNDLNKALEMKPEYKACLAQRARVLRVVGKCEASLADYEKLGKLDP-----EHKDLGE-VPRVRQCAQQSRAAASAQRAGNWRAVVDHLSAAMEVTEA--ADGMHMERAWAYQQMGELYEAIADYGKVLKIKGDNLDALQNRGACYYTLGEHEQAINHWREGLKRDPEHKGCKDAHKKLRKLMKAHDKGQK 268
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BLAST of mRNA_M-pyrifera_M_contig87584.20342.1 vs. uniprot
Match: A0A7S4DZC7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DZC7_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-19
Identity = 79/241 (32.78%), Postives = 118/241 (48.96%), Query Frame = 1 
Query:    7 AHLRLQKFPSALSDLDAALSLDAGLRVARTQRAGLLLSLGRCAESVSAFEELIRLDPAVAAKSGSDVGKKLPEARTCAEALHLADRAEGRGQWGVVREQLGRALESQRAHLSAPLHVRRARAGLALGLAQEALLDSAAALRLDAGIVEAYECRGQALYLLGEVGAAVSMAQQGLRRDPEHSGCMGLHKRLRRLQKLEQEGDRLLARGDSRGAAEKFGAAAAVDATHPRVAPSLLVKRAKAL 729
            AH+R +   SA+ DLD A+ LD  +  A   RA L    G C  S   +E ++ L P    KSG  +  K+    TC   L   D+A   G     +  L +AL+   A  S  L ++RA   +  G  Q A+LD+   L  D   ++A   RGQA Y LG+   AV+  ++GLR DP H     L+++++++ K  Q GDR         A+E + AA ++D +HP   P L  K+ + L
Sbjct:   81 AHMRFRAASSAIHDLDKAIELDPTMMKAYLNRARLRKGFGDCRGSKQDYERVLELKPK---KSG--IKDKIDSLGTCVHLLDEVDKALRVGDCAAAKPSLDQALDI--AAESVALRMKRADCAIKTGDYQVAMLDTRRILSSDKNNLDAIALRGQAYYGLGDTEIAVNHFKEGLRSDPGHKILKTLYRKVKKILKQIQTGDRSAEASQWVAASEAYAAAISLDNSHPVNVPHLHRKKCEVL 314
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BLAST of mRNA_M-pyrifera_M_contig87584.20342.1 vs. uniprot
Match: B8LBL2_THAPS (Dnaj-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBL2_THAPS)

HSP 1 Score: 78.6 bits (192), Expect = 5.300e-13
Identity = 78/259 (30.12%), Postives = 125/259 (48.26%), Query Frame = 1 
Query:   19 LQKFPSALSDLDAALSLDAGLRVA--RTQRAGLLLSLGRCAESVSAFEELIRLDPAVAAKSGSDVGKKLPEARTCAEALHLADRAEGRGQWGVVREQLGRALESQRAHLSAP-LHVRRARAGLALGLAQEALLDSAAALRLDAGIVEAYECRGQALYLLGEVGAAVSMAQQGLRRDPEHSGCMGLHKRLRRLQKLEQEGDRLLARGDSRGAAEKFGAAAAVDATHPR-VAPSLL--VKRAKALRQHGD-FLEAAKSAES 774
            ++    AL DL +A+  +    ++  R+Q+A LL+SLGRC E+V  ++ L+   P      G        EA  CA  + LA +A     W      L +AL    +   AP L  + A+A    G     + D    L++    +EAY+ RG++ + L EV  A+   ++GL+ DPEH GC   H+ ++++ K ++ GD    +   + A E +  A   D +H   V P+LL  VK   AL +H    LEA K  ++
Sbjct:    1 MRSLNEALDDLTSAVHGEPSKYLSEWRSQKAKLLVSLGRCEEAVEEYKLLL---PNXXXXXGQH------EAEECAHVIDLAQQAYADSNWVASTHYLKKALAFLPSPSDAPDLLYQLAQAEYHTGDYYGVISDMGKVLKVFPKHIEAYQLRGESYWRLNEVEMAMKHFREGLKLDPEHKGCKEGHRLVKKITKKDKRGDEAFEKRQYKQAIEHWWEAMNNDMSHLHFVRPTLLKVVKAHTALGEHDQAILEARKHVDN 250
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87584.20342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S1UAC9_9STRA2.360e-2333.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4DZC7_9EUKA1.060e-1932.78Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
B8LBL2_THAPS5.300e-1330.12Dnaj-like protein n=1 Tax=Thalassiosira pseudonana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87584contigM-pyrifera_M_contig87584:45..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog42099.EPrPV00000020234
KEGG koko:K09523,ko:K09527
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005886,GO:0008150,GO:0012505,GO:0016020,GO:0031974,GO:0035821,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043902,GO:0043903,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044788,GO:0044794,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0065007,GO:0070013,GO:0071944
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size786
Cds size786
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.5303314-CDS-M-pyrifera_M_contig87584:44..8301622816784.5303314-CDS-M-pyrifera_M_contig87584:44..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87584 45..830 -
1692278176.641772-CDS-M-pyrifera_M_contig87584:44..8301692278176.641772-CDS-M-pyrifera_M_contig87584:44..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87584 45..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87584.20342.1prot_M-pyrifera_M_contig87584.20342.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87584 45..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87584.20342.1

>prot_M-pyrifera_M_contig87584.20342.1 ID=prot_M-pyrifera_M_contig87584.20342.1|Name=mRNA_M-pyrifera_M_contig87584.20342.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=262bp
FKAHLRLQKFPSALSDLDAALSLDAGLRVARTQRAGLLLSLGRCAESVSA
FEELIRLDPAVAAKSGSDVGKKLPEARTCAEALHLADRAEGRGQWGVVRE
QLGRALESQRAHLSAPLHVRRARAGLALGLAQEALLDSAAALRLDAGIVE
AYECRGQALYLLGEVGAAVSMAQQGLRRDPEHSGCMGLHKRLRRLQKLEQ
EGDRLLARGDSRGAAEKFGAAAAVDATHPRVAPSLLVKRAKALRQHGDFL
EAAKSAESALRV
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mRNA from alignment at M-pyrifera_M_contig87584:45..830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87584.20342.1 ID=mRNA_M-pyrifera_M_contig87584.20342.1|Name=mRNA_M-pyrifera_M_contig87584.20342.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig87584:45..830- (Macrocystis pyrifera P11B4 male)
TTCAAAGCGCACCTGCGTCTTCAGAAGTTTCCCAGCGCGCTTTCCGACCT
GGACGCGGCGTTGTCTCTGGACGCTGGGCTGCGTGTGGCTCGGACGCAGC
GGGCGGGCCTGCTTTTGTCGCTGGGCCGGTGTGCGGAGAGCGTGTCTGCG
TTCGAGGAGCTGATTCGGCTGGACCCGGCGGTGGCTGCCAAGAGCGGGTC
GGACGTGGGGAAGAAGCTGCCCGAGGCGCGCACGTGCGCAGAGGCGCTGC
ACCTGGCGGACCGTGCGGAAGGCAGGGGCCAGTGGGGCGTGGTGCGCGAG
CAGCTGGGCCGCGCGCTAGAGAGCCAGCGCGCCCACTTGTCGGCGCCGCT
GCACGTGCGTCGCGCGAGAGCCGGCTTGGCGCTGGGACTGGCCCAGGAAG
CGCTGTTGGACTCTGCGGCTGCGCTTCGGTTGGATGCCGGAATTGTGGAG
GCCTATGAGTGCAGAGGCCAGGCCCTGTATTTGCTCGGTGAGGTGGGAGC
GGCGGTTTCCATGGCCCAGCAGGGGCTCAGACGAGACCCCGAGCACTCTG
GGTGCATGGGTCTGCACAAGCGGCTGCGGAGGCTGCAGAAACTGGAGCAA
GAAGGCGACCGGTTGTTGGCGAGAGGAGATTCGAGGGGGGCGGCCGAAAA
ATTTGGAGCAGCTGCAGCTGTGGATGCCACACACCCACGTGTGGCCCCTT
CCTTGCTCGTGAAGCGGGCCAAGGCATTGCGGCAGCACGGGGATTTTTTA
GAGGCTGCGAAATCCGCGGAATCTGCCCTGCGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87584:45..830-

>mRNA_M-pyrifera_M_contig87584.20342.1 ID=mRNA_M-pyrifera_M_contig87584.20342.1|Name=mRNA_M-pyrifera_M_contig87584.20342.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1572bp|location=Sequence derived from alignment at M-pyrifera_M_contig87584:45..830- (Macrocystis pyrifera P11B4 male)
TTCAAAGCGCACCTGCGTCTTCAGAAGTTTCCCAGCGCGCTTTCCGACCT
GGACGCGGCGTTGTCTCTGGACGCTGGGCTGCGTGTGGCTCGGACGCAGC
GGGCGGGCCTGCTTTTGTCGCTGGGCCGGTGTGCGGAGAGCGTGTCTGCG
TTCGAGGAGCTGATTCGGCTGGACCCGGCGGTGGCTGCCAAGAGCGGGTC
GGACGTGGGGAAGAAGCTGCCCGAGGCGCGCACGTGCGCAGAGGCGCTGC
ACCTGGCGGACCGTGCGGAAGGCAGGGGCCAGTGGGGCGTGGTGCGCGAG
CAGCTGGGCCGCGCGCTAGAGAGCCAGCGCGCCCACTTGTCGGCGCCGCT
GCACGTGCGTCGCGCGAGAGCCGGCTTGGCGCTGGGACTGGCCCAGGAAG
CGCTGTTGGACTCTGCGGCTGCGCTTCGGTTGGATGCCGGAATTGTGGAG
GCCTATGAGTGCAGAGGCCAGGCCCTGTATTTGCTCGGTGAGGTGGGAGC
GGCGGTTTCCATGGCCCAGCAGGGGCTCAGACGAGACCCCGAGCACTCTG
GGTGCATGGGTCTGCACAAGCGGCTGCGGAGGCTGCAGAAACTGGAGCAA
GAAGGCGACCGGTTGTTGGCGAGAGGAGATTCGAGGGGGGCGGCCGAAAA
ATTTGGAGCAGCTGCAGCTGTGGATGCCACACACCCACGTGTGGCCCCTT
CCTTGCTCGTGAAGCGGGCCAAGGCATTGCGGCAGCACGGGGATTTTTTA
GAGGCTGCGAAATCCGCGGAATCTGCCCTGCGGGTGTTCAAAGCGCACCT
GCGTCTTCAGAAGTTTCCCAGCGCGCTTTCCGACCTGGACGCGGCGTTGT
CTCTGGACGCTGGGCTGCGTGTGGCTCGGACGCAGCGGGCGGGCCTGCTT
TTGTCGCTGGGCCGGTGTGCGGAGAGCGTGTCTGCGTTCGAGGAGCTGAT
TCGGCTGGACCCGGCGGTGGCTGCCAAGAGCGGGTCGGACGTGGGGAAGA
AGCTGCCCGAGGCGCGCACGTGCGCAGAGGCGCTGCACCTGGCGGACCGT
GCGGAAGGCAGGGGCCAGTGGGGCGTGGTGCGCGAGCAGCTGGGCCGCGC
GCTAGAGAGCCAGCGCGCCCACTTGTCGGCGCCGCTGCACGTGCGTCGCG
CGAGAGCCGGCTTGGCGCTGGGACTGGCCCAGGAAGCGCTGTTGGACTCT
GCGGCTGCGCTTCGGTTGGATGCCGGAATTGTGGAGGCCTATGAGTGCAG
AGGCCAGGCCCTGTATTTGCTCGGTGAGGTGGGAGCGGCGGTTTCCATGG
CCCAGCAGGGGCTCAGACGAGACCCCGAGCACTCTGGGTGCATGGGTCTG
CACAAGCGGCTGCGGAGGCTGCAGAAACTGGAGCAAGAAGGCGACCGGTT
GTTGGCGAGAGGAGATTCGAGGGGGGCGGCCGAAAAATTTGGAGCAGCTG
CAGCTGTGGATGCCACACACCCACGTGTGGCCCCTTCCTTGCTCGTGAAG
CGGGCCAAGGCATTGCGGCAGCACGGGGATTTTTTAGAGGCTGCGAAATC
CGCGGAATCTGCCCTGCGGGTG
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