Homology
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
A0A5E5AEL4_9BURK (DUF4224 domain-containing protein n=2 Tax=Pandoraea anapnoica TaxID=2508301 RepID=A0A5E5AEL4_9BURK)
HSP 1 Score: 54.7 bits (130), Expect = 1.260e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
+ LT+SE+ E+TGRVR +Q+ LSA+GI KV PDG +LV+R H
Sbjct: 8 IFLTQSEIREMTGRVRHKSQTLVLSALGIEHKVRPDGSLLVLRSH 52
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
UPI00096A95B1 (DUF4224 domain-containing protein n=1 Tax=Halomonas massiliensis TaxID=1816686 RepID=UPI00096A95B1)
HSP 1 Score: 47.4 bits (111), Expect = 8.910e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
L LT EL ++TGR ++ +Q AL AMGI +K+N GK+LV R+H
Sbjct: 4 LFLTAEELIQLTGRKQTKSQREALDAMGIYWKINAAGKLLVGRKH 48
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
UPI0018E09BE6 (DUF4224 domain-containing protein n=1 Tax=Halomonas elongata TaxID=2746 RepID=UPI0018E09BE6)
HSP 1 Score: 46.2 bits (108), Expect = 2.550e-5
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1
Query: 13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
L LT EL E+TGR R QS L+AMGI +K N G+++V R H
Sbjct: 3 LFLTSEELEELTGRKRRKEQSETLTAMGIRWKTNAAGELIVGRSH 47
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
A0A4S1E765_9BURK (DUF4224 domain-containing protein n=1 Tax=Alcaligenaceae bacterium 429 TaxID=2562948 RepID=A0A4S1E765_9BURK)
HSP 1 Score: 46.2 bits (108), Expect = 3.450e-5
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 1
Query: 13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVR 141
L L + EL EITG+ R+ + L+ MGIPF++ PDG ++V++
Sbjct: 10 LTLNDPELTEITGKTRNKGRIEVLTQMGIPFRIRPDGSLVVLK 52
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
A0A537AZ45_9PROT (DUF4224 domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AZ45_9PROT)
HSP 1 Score: 47.0 bits (110), Expect = 3.960e-5
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 7 GMLHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVRE 144
G L L+ +EL +T R R AQ R L A+GI +++ PDG I+V+RE
Sbjct: 50 GALLLSPAELVALTERTRRGAQRRVLDALGISYRLRPDGSIVVLRE 95
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Match:
A0A4V3G204_9GAMM (Uncharacterized protein DUF4224 n=1 Tax=Halomonas alkaliantarctica TaxID=232346 RepID=A0A4V3G204_9GAMM)
HSP 1 Score: 45.1 bits (105), Expect = 7.270e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
Query: 13 LHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH 147
L LT E+ +TGR + +Q AL AMGI +KVN GK+LV R+H
Sbjct: 4 LFLTVEEMVRLTGRKQYKSQREALDAMGIYWKVNAAGKLLVGRKH 48
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87501.20327.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90 )
Total hits: 6
0 1 Expect = 1.26e-8 / Id = 55.56 Expect = 8.91e-6 / Id = 51.11 Expect = 2.55e-5 / Id = 51.11 Expect = 3.45e-5 / Id = 44.19 Expect = 3.96e-5 / Id = 47.83 Expect = 7.27e-5 / Id = 51.11 Sequence A0A5E5AEL4_9BURK UPI00096A95B1 UPI0018E09BE6 A0A4S1E765_9BURK A0A537AZ45_9PROT A0A4V3G204_9GAMM back to top
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816783.7885509-UTR-M-pyrifera_M_contig87501:533..542 1622816783.7885509-UTR-M-pyrifera_M_contig87501:533..542 Macrocystis pyrifera P11B4 male UTR M-pyrifera_M_contig87501 534..542 + 1692278176.1918054-UTR-M-pyrifera_M_contig87501:533..542 1692278176.1918054-UTR-M-pyrifera_M_contig87501:533..542 Macrocystis pyrifera P11B4 male UTR M-pyrifera_M_contig87501 534..542 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816783.8015406-CDS-M-pyrifera_M_contig87501:542..680 1622816783.8015406-CDS-M-pyrifera_M_contig87501:542..680 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig87501 543..680 + 1692278176.2029297-CDS-M-pyrifera_M_contig87501:542..680 1692278176.2029297-CDS-M-pyrifera_M_contig87501:542..680 Macrocystis pyrifera P11B4 male CDS M-pyrifera_M_contig87501 543..680 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig87501.20327.1
>prot_M-pyrifera_M_contig87501.20327.1 ID=prot_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MLHLTESELAEITGRVRSAAQSRALSAMGIPFKVNPDGKILVVREH back to top mRNA from alignment at M-pyrifera_M_contig87501:534..680+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87501.20327.1 ID=mRNA_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig87501:534..680+ (Macrocystis pyrifera P11B4 male)GGATGCGGG ATGCTGCACTTAACCGAATCTGAACTGGCCGAGATAACCGG
GCGTGTCCGCAGCGCCGCCCAGTCTCGCGCATTGTCGGCAATGGGCATAC
CATTCAAGGTGAATCCGGACGGGAAGATCCTTGTCGTGCGAGAACAT back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig87501:534..680+
>mRNA_M-pyrifera_M_contig87501.20327.1 ID=mRNA_M-pyrifera_M_contig87501.20327.1|Name=mRNA_M-pyrifera_M_contig87501.20327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig87501:534..680+ (Macrocystis pyrifera P11B4 male) back to top