mRNA_M-pyrifera_M_contig87481.20320.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87481.20320.1
Unique NamemRNA_M-pyrifera_M_contig87481.20320.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87481.20320.1 vs. uniprot
Match: A0A2E2TGK2_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2TGK2_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 9.550e-32
Identity = 86/258 (33.33%), Postives = 132/258 (51.16%), Query Frame = 1 
Query:    1 MSMADSFNEMEPKQKVTLLVTIVLFAFMAYLAYDTFFAGDS----VSAPAPKVAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEAQKANIQQIPKAE---PTPEERALIAKSQEIQGQYLELVNQYQLKQMQQKLGAADAAIAASVLQTATTRLQTQQLQEQMKDQKSGPSITSADNTTDGKPAAAPISNIEVSYVGQKRGNWMAMLNLDGNFFEVRMGTQLPDGAVVDLINEKGVVLEKNSEKKYFRVPRSLD 753
            MS+ D+  E+E KQKV L+  ++L     Y+ Y TFF   S    VS+P P     P+                              ++K+N+  + K     PTPE+ A++A+SQ++Q +Y+ LV+QYQ+ Q++QKL   +AAIA                          P++T +DNT++     AP   I+V +VG++ G W AML  +G +FEV  GT+LPDG+VV  I++KGV L K   + Y  +P++LD
Sbjct:    1 MSVIDNIKELESKQKVMLVAIVLLLGVAVYMGYTTFFPPTSTSTVVSSPQPVRTPEPSSPTQTTSTRSLVTAPTVNSTGVA-------SKKSNMAYVEKPNTDAPTPEQLAILAQSQQLQEEYIHLVSQYQIAQLEQKLATTNAAIAKXXXXXXXXXXXXXXXXGNFSQT---PTLTXSDNTSN--KVNAPTGAIQVMFVGRQNGKWTAMLGGNGTYFEVNTGTRLPDGSVVSSISQKGVTLTKAGHRIYLAIPKTLD 246
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BLAST of mRNA_M-pyrifera_M_contig87481.20320.1 vs. uniprot
Match: A0A2E3MKE5_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MKE5_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 4.410e-25
Identity = 65/164 (39.63%), Postives = 104/164 (63.41%), Query Frame = 1 
Query:  268 IQQIPKAEPTPEERALIAKSQEIQGQYLELVNQYQLKQMQQKLGAADAAIAASVLQTATTRLQTQQLQEQMKDQKSGPSITSADNTTDGKPAAAPIS--NIEVSYVGQKRGNWMAMLNLDGNFFEVRMGTQLPDGAVVDLINEKGVVLEKNSEKKYFRVPRSLD 753
            I ++PK   TP + A++ +S++ + QY+EL+NQYQ+ Q+QQKL A +A IA S L++A    +TQ++  Q+  Q S             KP AA  +  NIEV+Y+GQ++G W AML   G++F+V +GTQL +GA V  I+ +GV + ++ EK +  +P +L+
Sbjct:  186 ITEVPKQPLTPAQLAVLEQSKKTEAQYVELLNQYQIAQLQQKLVATNAQIAESRLRSAQLEAKTQEVSNQLTGQGSL------------KPTAATTAAKNIEVAYIGQQKGRWQAMLTSGGSYFQVTVGTQLQNGARVTAISPRGVTIMQDGEKHFIAMPDALN 337
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BLAST of mRNA_M-pyrifera_M_contig87481.20320.1 vs. uniprot
Match: A0A849I3P9_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849I3P9_9GAMM)

HSP 1 Score: 108 bits (269), Expect = 9.040e-25
Identity = 85/257 (33.07%), Postives = 125/257 (48.64%), Query Frame = 1 
Query:    1 MSMADSFNEMEPKQKVTLLVTIVLFAFMAYLAYDTFFAGDSVSAPA----PKVAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEAQKANIQQIPKAEPTPEERALIAKSQEIQGQYLELVNQYQLKQMQQKLGAADAAIAASVLQTATTRLQTQQLQEQMKDQKSGPSITSADNTTDGKPAAAPI-SNIEVSYVGQKRGNWMAMLNLDGNFFEVRMGTQLPDGAVVDLINEKGVVLEKNSEKKYFR-VPRSLD 753
            MS  D+  +++ KQK  L+ TI     + YLAY TFF G    A +    P +++ P                                   + Q      PTP   AL+A+SQ++Q QY+++VN+YQL Q+QQKL A D+ IAAS L T  + ++ ++LQ  +  Q    S     N   G+PA +      +  YVGQ  G W AML  DG +++V  G +LPDG+VV  I  +GVV+   S    F  + ++LD
Sbjct:    1 MSFVDNVKQLDTKQKGMLVATIGCLGLVIYLAYTTFFPGGGTPASSKPLSPAISSEPVVIESAPSGNSSPQMPASNGMTGAIPANSPVNAHPDNQNTANP-PTPANLALLAQSQQMQQQYIQMVNEYQLAQLQQKLAAVDSQIAASKLTTTKSLVELKKLQPLLGSQYG--STQGVSNA--GEPATSSTPQGFQTMYVGQVNGVWQAMLVSDGQYYQVGAGMRLPDGSVVSQITVRGVVITTASGTPMFLPMTKNLD 252
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BLAST of mRNA_M-pyrifera_M_contig87481.20320.1 vs. uniprot
Match: A0A1G0IZ77_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9 TaxID=1798289 RepID=A0A1G0IZ77_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 4.200e-8
Identity = 67/241 (27.80%), Postives = 105/241 (43.57%), Query Frame = 1 
Query:   25 EMEPKQKVTLLVTIVLFAFMAYLAYDTFFAGDSVSAPAPKVAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEAQKANIQQIPKAEPTPEERALIA-------KSQEIQGQYLELVNQYQLKQMQQKLGAADAAIAASVLQTATTRLQTQQLQEQMKDQKSGPSITSADNTTDGKPAAAPISNIEVSYVGQKRG-NWMAMLNLDGNFFEVRMGTQLPDGAVVDLINEKGVVLEKNSEK 723
            +++ KQ   L++T+V   F+ Y    T    D ++ PAP+ AA+                                AQ  N      A  TP     +A        + E Q  YL++VN+Y++ QM+ KL   + AIA +    A    +T +  +           TS   TT G    A  + I ++Y+GQ+ G +W A L ++G F +V  G+ L DG VV  INE+GV L+  S++
Sbjct:    2 KLQKKQAPLLILTLVALGFLGY--QITALIRDDIATPAPQPAASAQTAAHTVAAAPASNTPPAPTQNAANHNANPPAQATN------ANATPRVHTSLAGLNTTPNATTEDQKAYLQMVNRYEVAQMEHKLLNEELAIARAQHDIAMISQETHRFTQD---------DTSFGATT-GTTQNAANAGITLAYLGQQTGGHWAATLAMNGTFQDVTAGSHLKDGTVVRRINEQGVELQNGSQR 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87481.20320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E2TGK2_9GAMM9.550e-3233.33Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A2E3MKE5_9GAMM4.410e-2539.63Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A849I3P9_9GAMM9.040e-2533.07Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A1G0IZ77_9GAMM4.200e-827.80Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87481contigM-pyrifera_M_contig87481:50..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size756
Cds size756
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.3985245-CDS-M-pyrifera_M_contig87481:49..8051622816783.3985245-CDS-M-pyrifera_M_contig87481:49..805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87481 50..805 +
1692278175.9336295-CDS-M-pyrifera_M_contig87481:49..8051692278175.9336295-CDS-M-pyrifera_M_contig87481:49..805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87481 50..805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87481.20320.1prot_M-pyrifera_M_contig87481.20320.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87481 50..805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87481.20320.1

>prot_M-pyrifera_M_contig87481.20320.1 ID=prot_M-pyrifera_M_contig87481.20320.1|Name=mRNA_M-pyrifera_M_contig87481.20320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
MSMADSFNEMEPKQKVTLLVTIVLFAFMAYLAYDTFFAGDSVSAPAPKVA
AAPTPAPKSASATTASSASTQVRTFQPAQPQQTEAQKANIQQIPKAEPTP
EERALIAKSQEIQGQYLELVNQYQLKQMQQKLGAADAAIAASVLQTATTR
LQTQQLQEQMKDQKSGPSITSADNTTDGKPAAAPISNIEVSYVGQKRGNW
MAMLNLDGNFFEVRMGTQLPDGAVVDLINEKGVVLEKNSEKKYFRVPRSL
D*
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mRNA from alignment at M-pyrifera_M_contig87481:50..805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87481.20320.1 ID=mRNA_M-pyrifera_M_contig87481.20320.1|Name=mRNA_M-pyrifera_M_contig87481.20320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig87481:50..805+ (Macrocystis pyrifera P11B4 male)
ATGAGTATGGCAGATTCATTTAACGAAATGGAACCGAAGCAAAAAGTAAC
CTTGCTTGTAACCATTGTCCTATTCGCATTTATGGCCTATTTAGCTTATG
ATACATTTTTTGCTGGCGATAGTGTATCTGCACCTGCTCCGAAAGTTGCA
GCTGCACCAACACCTGCACCAAAATCAGCATCAGCGACGACTGCATCTTC
AGCATCAACTCAAGTGCGTACATTTCAGCCTGCACAACCTCAACAAACTG
AAGCTCAAAAAGCGAATATTCAGCAAATTCCCAAAGCTGAGCCTACTCCT
GAAGAACGCGCGCTTATTGCTAAAAGCCAAGAAATTCAAGGTCAATATTT
AGAATTAGTGAATCAATACCAACTCAAACAAATGCAACAAAAACTTGGTG
CGGCAGATGCAGCAATTGCAGCTTCAGTACTGCAAACCGCAACAACACGT
CTACAAACACAACAATTGCAAGAACAAATGAAAGATCAAAAATCAGGTCC
ATCAATTACTTCTGCAGATAATACAACTGATGGTAAGCCAGCCGCTGCGC
CCATTAGCAACATTGAAGTCTCCTATGTTGGCCAAAAGCGTGGCAACTGG
ATGGCGATGCTAAATTTAGATGGCAACTTTTTTGAAGTACGCATGGGTAC
TCAATTGCCTGATGGGGCGGTCGTCGATCTGATTAATGAAAAAGGCGTGG
TATTAGAGAAAAATAGTGAGAAAAAATATTTTCGTGTCCCGCGTTCATTG
GATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87481:50..805+

>mRNA_M-pyrifera_M_contig87481.20320.1 ID=mRNA_M-pyrifera_M_contig87481.20320.1|Name=mRNA_M-pyrifera_M_contig87481.20320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig87481:50..805+ (Macrocystis pyrifera P11B4 male)
ATGAGTATGGCAGATTCATTTAACGAAATGGAACCGAAGCAAAAAGTAAC
CTTGCTTGTAACCATTGTCCTATTCGCATTTATGGCCTATTTAGCTTATG
ATACATTTTTTGCTGGCGATAGTGTATCTGCACCTGCTCCGAAAGTTGCA
GCTGCACCAACACCTGCACCAAAATCAGCATCAGCGACGACTGCATCTTC
AGCATCAACTCAAGTGCGTACATTTCAGCCTGCACAACCTCAACAAACTG
AAGCTCAAAAAGCGAATATTCAGCAAATTCCCAAAGCTGAGCCTACTCCT
GAAGAACGCGCGCTTATTGCTAAAAGCCAAGAAATTCAAGGTCAATATTT
AGAATTAGTGAATCAATACCAACTCAAACAAATGCAACAAAAACTTGGTG
CGGCAGATGCAGCAATTGCAGCTTCAGTACTGCAAACCGCAACAACACGT
CTACAAACACAACAATTGCAAGAACAAATGAAAGATCAAAAATCAGGTCC
ATCAATTACTTCTGCAGATAATACAACTGATGGTAAGCCAGCCGCTGCGC
CCATTAGCAACATTGAAGTCTCCTATGTTGGCCAAAAGCGTGGCAACTGG
ATGGCGATGCTAAATTTAGATGGCAACTTTTTTGAAGTACGCATGGGTAC
TCAATTGCCTGATGGGGCGGTCGTCGATCTGATTAATGAAAAAGGCGTGG
TATTAGAGAAAAATAGTGAGAAAAAATATTTTCGTGTCCCGCGTTCATTG
GATTAAATGAGTATGGCAGATTCATTTAACGAAATGGAACCGAAGCAAAA
AGTAACCTTGCTTGTAACCATTGTCCTATTCGCATTTATGGCCTATTTAG
CTTATGATACATTTTTTGCTGGCGATAGTGTATCTGCACCTGCTCCGAAA
GTTGCAGCTGCACCAACACCTGCACCAAAATCAGCATCAGCGACGACTGC
ATCTTCAGCATCAACTCAAGTGCGTACATTTCAGCCTGCACAACCTCAAC
AAACTGAAGCTCAAAAAGCGAATATTCAGCAAATTCCCAAAGCTGAGCCT
ACTCCTGAAGAACGCGCGCTTATTGCTAAAAGCCAAGAAATTCAAGGTCA
ATATTTAGAATTAGTGAATCAATACCAACTCAAACAAATGCAACAAAAAC
TTGGTGCGGCAGATGCAGCAATTGCAGCTTCAGTACTGCAAACCGCAACA
ACACGTCTACAAACACAACAATTGCAAGAACAAATGAAAGATCAAAAATC
AGGTCCATCAATTACTTCTGCAGATAATACAACTGATGGTAAGCCAGCCG
CTGCGCCCATTAGCAACATTGAAGTCTCCTATGTTGGCCAAAAGCGTGGC
AACTGGATGGCGATGCTAAATTTAGATGGCAACTTTTTTGAAGTACGCAT
GGGTACTCAATTGCCTGATGGGGCGGTCGTCGATCTGATTAATGAAAAAG
GCGTGGTATTAGAGAAAAATAGTGAGAAAAAATATTTTCGTGTCCCGCGT
TCATTGGATTAA
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