mRNA_M-pyrifera_M_contig87424.20317.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A5A8CA24_CAFRO (RING-type domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA24_CAFRO) HSP 1 Score: 114 bits (284), Expect = 1.310e-30 Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RFE+KKW++ A WSW+VEQDRCAICRNSIYEPSIE QA+ +++V ++WG CNHCFHLECISRWL+SN + WV Sbjct: 22 RFEVKKWNAVAFWSWDVEQDRCAICRNSIYEPSIEIQAA---------------------------------GLTDVTISWGECNHCFHLECISRWLRSNNTCPLCSAEWV 99
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A812N3D3_9DINO (Rbx-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N3D3_9DINO) HSP 1 Score: 111 bits (278), Expect = 1.020e-27 Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPC-----------------RRLWV-FLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RFE+KKW++ A WSW+VEQDRCAICRNSIYEPSIE QA+ + A RR V LG + S + +V ++WG CNHCFHLECISRWL+SN + WV Sbjct: 157 RFEVKKWNAVAFWSWDVEQDRCAICRNSIYEPSIEIQAAGLTVSARALPTGPPHEHGRRKPALQRRARVRLLGEWRGLPPRAPSLLL------DVTISWGECNHCFHLECISRWLRSNNTCPLCSAEWV 279
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A226P105_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226P105_COLVI) HSP 1 Score: 106 bits (265), Expect = 2.650e-27 Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPC-RRLWVFLGPFPLQTLTNISTVFCC------------CSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGW 330 RFE+KKWS+ A+WSW++ D CAICRN I + IE QA++YVL + R +++ F L ++S+ FC S E VAWG CNH FH CISRWLK+ V + W Sbjct: 12 RFEVKKWSAVALWSWDIVVDNCAICRNHIMDLCIECQANQYVLTSQVYTRPSIYVSYFVSLRLAHMSSRFCSFSFLLFAVFQGSASSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNAEW 134
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A7S1QNA5_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QNA5_NEODS) HSP 1 Score: 92.4 bits (228), Expect = 3.520e-22 Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGW 330 RFEIKKW++ A+WSW++ D CAICRN I + IE QA++ Q+ TN E +VAWG CNH FH CISRWLK+ V + W Sbjct: 14 RFEIKKWNAVALWSWDLNVDTCAICRNHIMDLCIECQANQ-------------------QSATN----------DECSVAWGVCNHAFHFHCISRWLKTRQVCPLDNKEW 94
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A1M8A8N6_MALS4 (Similar to S.cerevisiae protein HRT1 (RING-H2 domain core subunit of multiple ubiquitin ligase complexes) n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A8N6_MALS4) HSP 1 Score: 92.0 bits (227), Expect = 6.060e-22 Identity = 45/111 (40.54%), Postives = 56/111 (50.45%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW+S +WSW+++ D CAICRN I + IE QA+ Q T I E VAWGACNH FH CISRWLK+ V + WV Sbjct: 21 RFQVKKWNSVCLWSWDIQVDNCAICRNQIMDLCIECQAN--------------------QGSTTID---------ECTVAWGACNHAFHFHCISRWLKTRPVCPLDNREWV 102
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836HLC2_LEIEN (RING-type domain-containing protein n=6 Tax=Leishmaniinae TaxID=1286322 RepID=A0A836HLC2_LEIEN) HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22 Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW++ A+WSW+++ D CAICRN I + IE Q+ N S CS + VAWGACNH FH+ CISRWLK+ V + WV Sbjct: 20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CSPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 100
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836LB11_9TRYP (RING-type domain-containing protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836LB11_9TRYP) HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22 Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW++ A+WSW+++ D CAICRN I + IE Q+ N+S CS + V WGACNH FH+ CISRWLK+ V + WV Sbjct: 20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NLS-----CSSKDCTVVWGACNHAFHVHCISRWLKTRNVCPLDNKEWV 100
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836II31_9TRYP (RING-type domain-containing protein n=7 Tax=Leishmania TaxID=5658 RepID=A0A836II31_9TRYP) HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22 Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW++ A+WSW+++ D CAICRN I + IE Q+ N S CS + VAWGACNH FH+ CISRWLK+ V + WV Sbjct: 20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CSPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 100
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A8PUW7_MALGO (RING-type domain-containing protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PUW7_MALGO) HSP 1 Score: 91.3 bits (225), Expect = 1.400e-21 Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW+S +WSW+++ D CAICRN I + IE QA++ ++ E VAWGACNH FH CISRWLK+ V + WV Sbjct: 17 RFQVKKWNSVCLWSWDIQVDNCAICRNQIMDLCIECQANQGSA-----------------------------TIDECTVAWGACNHAFHFHCISRWLKTRPVCPLDNREWV 98
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A088RS78_9TRYP (Ring-box protein 1, putative n=4 Tax=Leishmania TaxID=5658 RepID=A0A088RS78_9TRYP) HSP 1 Score: 90.5 bits (223), Expect = 2.130e-21 Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333 RF++KKW++ A+WSW+++ D CAICRN I + IE Q+ N S C+ + VAWGACNH FH+ CISRWLK+ V + WV Sbjct: 17 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CAPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 97 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig87424.20317.1 >prot_M-pyrifera_M_contig87424.20317.1 ID=prot_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLback to top mRNA from alignment at M-pyrifera_M_contig87424:33..455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig87424.20317.1 ID=mRNA_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig87424:33..455- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig87424:33..455- >mRNA_M-pyrifera_M_contig87424.20317.1 ID=mRNA_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig87424:33..455- (Macrocystis pyrifera P11B4 male)back to top |