mRNA_M-pyrifera_M_contig87411.20313.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87411.20313.1
Unique NamemRNA_M-pyrifera_M_contig87411.20313.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87411.20313.1 vs. uniprot
Match: K3WMR8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMR8_GLOUD)

HSP 1 Score: 115 bits (289), Expect = 6.370e-28
Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:   16 RRMVAALWNPGKKYANTRHNAGEMVLRRFIEATAPLLSTDGQPVTFRRTKSGDAEIARTTFRFATPKDHVDSAMHDAPPVLA------HDIVDWTSKRRREKTASGDVPYPEVETTMLLPTEFINNSGPCIRAEMQRSSWRLKRNHSAVRKGDELCVMFDDYKLPFGKVQLLPK 519
            R+++  L NPG+KYA TRHN G M +  F++         G  + F+   S   ++AR    F   +  VD+   DA    A       D+V+ +SKRR++KT    VP+P+V   +LLPT ++N SG  ++  M    WRLK+N  A+ + DEL V+ DD  LPFG  +   K
Sbjct:   60 RKLIVGLGNPGEKYAKTRHNIGSMAVTHFLDTYVQ--DVLGTKLAFQHEASNHGDVARFAISF---QQDVDTDEDDATKGTAAYTYRVDDLVNCSSKRRKDKTLEEGVPHPDVNVALLLPTTYMNRSGVAVKTFMNAHHWRLKKNALALNRQDELLVVTDDVALPFGTCRFKSK 228
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87411.20313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K3WMR8_GLOUD6.370e-2836.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87411contigM-pyrifera_M_contig87411:194..770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog115417.EPrPW00000024217
KEGG koko:K01056
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Peptidyl-tRNA hydrolase. Source PGD
EggNOG OGs1ME0P@121069,COG0193@1,KOG2255@2759
EC3.1.1.29
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons2
Model size519
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.0776293-CDS-M-pyrifera_M_contig87411:193..5381622816783.0776293-CDS-M-pyrifera_M_contig87411:193..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87411 194..538 +
1692278175.7488437-CDS-M-pyrifera_M_contig87411:193..5381692278175.7488437-CDS-M-pyrifera_M_contig87411:193..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87411 194..538 +
1622816783.0883179-CDS-M-pyrifera_M_contig87411:596..7701622816783.0883179-CDS-M-pyrifera_M_contig87411:596..770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87411 597..770 +
1692278175.760946-CDS-M-pyrifera_M_contig87411:596..7701692278175.760946-CDS-M-pyrifera_M_contig87411:596..770Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87411 597..770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87411.20313.1prot_M-pyrifera_M_contig87411.20313.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87411 194..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87411.20313.1

>prot_M-pyrifera_M_contig87411.20313.1 ID=prot_M-pyrifera_M_contig87411.20313.1|Name=mRNA_M-pyrifera_M_contig87411.20313.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MVHHARRMVAALWNPGKKYANTRHNAGEMVLRRFIEATAPLLSTDGQPVT
FRRTKSGDAEIARTTFRFATPKDHVDSAMHDAPPVLAHDIVDWTSKRRRE
KTASGDVPYPEVETTMLLPTEFINNSGPCIRAEMQRSSWRLKRNHSAVRK
GDELCVMFDDYKLPFGKVQLLPK
back to top

mRNA from alignment at M-pyrifera_M_contig87411:194..770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87411.20313.1 ID=mRNA_M-pyrifera_M_contig87411.20313.1|Name=mRNA_M-pyrifera_M_contig87411.20313.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=577bp|location=Sequence derived from alignment at M-pyrifera_M_contig87411:194..770+ (Macrocystis pyrifera P11B4 male)
ATGGTTCATCATGCGCGCCGTATGGTTGCTGCGCTGTGGAATCCAGGGAA
GAAGTATGCAAACACAAGGCATAACGCTGGGGAGATGGTTCTGAGGAGGT
TCATCGAGGCTACAGCGCCGCTACTGTCTACAGATGGGCAACCTGTTACT
TTCAGGCGAACCAAGTCTGGCGACGCGGAGATTGCACGCACCACGTTTCG
CTTTGCGACTCCGAAAGATCACGTGGACAGCGCAATGCATGATGCGCCTC
CTGTGTTGGCACATGACATTGTAGATTGGACATCGAAGCGCAGACGGGAG
AAAACAGCAAGCGGGGATGTCCCATACCCAGAGGTTGAGACAACTGTACG
TAGCGGCCAACTTGGCGCACAGGTATCCATCCTGCTCAAACGTATCCTAC
CAGATGCTCCTGCCTACAGAATTCATCAACAACAGCGGACCGTGTATTCG
CGCAGAAATGCAGCGCAGCTCATGGAGGCTGAAGCGAAACCACAGCGCTG
TACGCAAAGGAGATGAGCTCTGCGTGATGTTTGATGACTATAAGCTTCCA
TTTGGGAAGGTGCAGTTGTTACCGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87411:194..770+

>mRNA_M-pyrifera_M_contig87411.20313.1 ID=mRNA_M-pyrifera_M_contig87411.20313.1|Name=mRNA_M-pyrifera_M_contig87411.20313.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig87411:194..770+ (Macrocystis pyrifera P11B4 male)
ATGGTTCATCATGCGCGCCGTATGGTTGCTGCGCTGTGGAATCCAGGGAA
GAAGTATGCAAACACAAGGCATAACGCTGGGGAGATGGTTCTGAGGAGGT
TCATCGAGGCTACAGCGCCGCTACTGTCTACAGATGGGCAACCTGTTACT
TTCAGGCGAACCAAGTCTGGCGACGCGGAGATTGCACGCACCACGTTTCG
CTTTGCGACTCCGAAAGATCACGTGGACAGCGCAATGCATGATGCGCCTC
CTGTGTTGGCACATGACATTGTAGATTGGACATCGAAGCGCAGACGGGAG
AAAACAGCAAGCGGGGATGTCCCATACCCAGAGGTTGAGACAACTATGGT
TCATCATGCGCGCCGTATGGTTGCTGCGCTGTGGAATCCAGGGAAGAAGT
ATGCAAACACAAGGCATAACGCTGGGGAGATGGTTCTGAGGAGGTTCATC
GAGGCTACAGCGCCGCTACTGTCTACAGATGGGCAACCTGTTACTTTCAG
GCGAACCAAGTCTGGCGACGCGGAGATTGCACGCACCACGTTTCGCTTTG
CGACTCCGAAAGATCACGTGGACAGCGCAATGCATGATGCGCCTCCTGTG
TTGGCACATGACATTGTAGATTGGACATCGAAGCGCAGACGGGAGAAAAC
AGCAAGCGGGGATGTCCCATACCCAGAGGTTGAGACAACTATGCTCCTGC
CTACAGAATTCATCAACAACAGCGGACCGTGTATTCGCGCAGAAATGCAG
CGCAGCTCATGGAGGCTGAAGCGAAACCACAGCGCTGTACGCAAAGGAGA
TGAGCTCTGCGTGATGTTTGATGACTATAAGCTTCCATTTGGGAAGGTGC
AGTTGTTACCGAAGATGCTCCTGCCTACAGAATTCATCAACAACAGCGGA
CCGTGTATTCGCGCAGAAATGCAGCGCAGCTCATGGAGGCTGAAGCGAAA
CCACAGCGCTGTACGCAAAGGAGATGAGCTCTGCGTGATGTTTGATGACT
ATAAGCTTCCATTTGGGAAGGTGCAGTTGTTACCGAAG
back to top