mRNA_M-pyrifera_M_contig87380.20311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87380.20311.1
Unique NamemRNA_M-pyrifera_M_contig87380.20311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: UPI0018D85A61 (glycosyltransferase 1 domain-containing protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85A61)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-7
Identity = 34/110 (30.91%), Postives = 53/110 (48.18%), Query Frame = 1
Query:   16 RADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSAQFEATPPIALFFHDRASLLEILAT--TTPSTRESIAANAKAFIDTHFHPRRERHQWTQLLDKVA 339
            ++D    +++   +VNSSLSEG P A+LEAM L  P I R  P +          L +      + +     T+P    +I   AK F+D H  P+ ER  +  L+ ++A
Sbjct:  230 QSDCHRAMQECTAVVNSSLSEGMPAAILEAMDLCVPVIARNIPGNRTLITHRQTGLLYDTPEEFINLAEDLLTSPGQHAAITRQAKEFVDAHHSPQSERTTYVSLVKRMA 339          
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: UPI001BE8EA27 (glycosyltransferase family 4 protein n=1 Tax=Streptomyces sp. ISL-44 TaxID=2819184 RepID=UPI001BE8EA27)

HSP 1 Score: 56.2 bits (134), Expect = 7.800e-7
Identity = 42/119 (35.29%), Postives = 57/119 (47.90%), Query Frame = 1
Query:    4 GLKRRADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSAQFEATPPIALFFHD----RASLLEILATTTPSTRESIAANAKAFIDTHFHPRRERHQWTQLLDKVAPPS 348
            G   R D+   +R+A  ++N+S+SE SP AVLEAM L TP I R  P +    A     L FH     R     +L     S   ++A NA+  ID+      E   +TQLL  +A  S
Sbjct:  218 GALNRRDLHAAMREATAVLNTSISECSPNAVLEAMHLGTPVIARDIPGNTCLVADGITGLLFHSPDEFRRQAQRLLE--DRSLAATLAGNARRMIDSRHSLPAEAAAYTQLLQHMASRS 334          
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: A0A1A8VCH1_NOTFU (Glycosyltransferase 1 domain containing 1 n=11 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8VCH1_NOTFU)

HSP 1 Score: 53.9 bits (128), Expect = 5.130e-6
Identity = 37/107 (34.58%), Postives = 52/107 (48.60%), Query Frame = 1
Query:   37 IRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSA---QFEATPPIAL----FFHDRASLLEILATTTPSTRESIAANAKAFIDTHFHPRRERHQWTQLLDKV 336
            +++   LVNSS+SEG  GA+LEAM L  P + R  P +A   Q EA   +      F H    LL          RE +  N K ++D H   ++ER  + QL D +
Sbjct:  241 MKRCFALVNSSVSEGMSGAILEAMDLRVPVLARDIPGNAAVVQHEANGLLYSSPQEFVHQSQRLLS-----DQELRERVVRNGKRYVDEHHSLKQERETYQQLADTL 342          
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: UPI0009811E1B (glycosyltransferase n=1 Tax=Bacillus sp. FJAT-27225 TaxID=1743144 RepID=UPI0009811E1B)

HSP 1 Score: 51.6 bits (122), Expect = 5.980e-6
Identity = 35/115 (30.43%), Postives = 54/115 (46.96%), Query Frame = 1
Query:    1 VGLKRRADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSAQFEATPPIALFFHDRASLLEILATTTPST--RESIAANAKAFIDTHFHPRRERHQWTQLLDKVA 339
            VG      ++E+   AD +VNSSLSEG P A++EAM L  P I RK   + Q  +       +      +E + +   +T  RE+I   AK  +   F P +E   +  L  ++ 
Sbjct:    7 VGAVPHELMIEKYESADIIVNSSLSEGQPLALMEAMGLGLPVIGRKNNANLQLISHEKTGWLYETIPDFIEAVHSIVSNTTLRENIVKQAKESMFEKFLPEKEAMAYLSLYHQIG 121          
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: A0A3Q3KF18_MONAL (Glycosyltransferase 1 domain containing 1 n=2 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3KF18_MONAL)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-5
Identity = 36/116 (31.03%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   10 KRRADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSA---QFEATPPIAL----FFHDRASLLEILATTTPSTRESIAANAKAFIDTHFHPRRERHQWTQLLDKV 336
            + R ++   +++   +VNSS+SEG  GA+LEAM L  P + R  P +A   Q E T  +      F H    LL          RE +  N K +++ H   +RER  + QL++ +
Sbjct:  232 RSRQELHAAMKRCFAVVNSSVSEGMSGAILEAMDLGVPVLARNIPGNAAVVQHEFTGLLYSSPQEFVHQSQRLLS-----DHELRERVVRNGKIYVEEHHSLKRERETYQQLVNTL 342          
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Match: A0A0M3REY7_9BACI (Glycos_transf_1 domain-containing protein n=2 Tax=unclassified Bacillus (in: Bacteria) TaxID=185979 RepID=A0A0M3REY7_9BACI)

HSP 1 Score: 50.4 bits (119), Expect = 8.320e-5
Identity = 36/116 (31.03%), Postives = 53/116 (45.69%), Query Frame = 1
Query:    1 VGLKRRADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWSAQF---EATPPIALFFHDRASLLEILATTTPSTRESIAANAKAFIDTHFHPRRERHQWTQLLDKVA 339
            VG      ++EE  KAD ++NSSLSEG P A++EAM L  P I RK   + Q    E T  +     D    +  +    P  RE +   A+  +   F P +E   +  L  ++ 
Sbjct:  213 VGAVPHELMIEEYDKADIIINSSLSEGQPLALMEAMGLGLPVIGRKNKANLQLILHEETGWLYETISDFKEAIHSIVNNIP-LREKVVRQARESMFEKFSPEKEALAYLSLYKRIG 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87380.20311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0018D85A611.650e-730.91glycosyltransferase 1 domain-containing protein 1-... [more]
UPI001BE8EA277.800e-735.29glycosyltransferase family 4 protein n=1 Tax=Strep... [more]
A0A1A8VCH1_NOTFU5.130e-634.58Glycosyltransferase 1 domain containing 1 n=11 Tax... [more]
UPI0009811E1B5.980e-630.43glycosyltransferase n=1 Tax=Bacillus sp. FJAT-2722... [more]
A0A3Q3KF18_MONAL3.320e-531.03Glycosyltransferase 1 domain containing 1 n=2 Tax=... [more]
A0A0M3REY7_9BACI8.320e-531.03Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87380contigM-pyrifera_M_contig87380:479..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.0039396-CDS-M-pyrifera_M_contig87380:478..8291622816783.0039396-CDS-M-pyrifera_M_contig87380:478..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87380 479..829 -
1692278175.718205-CDS-M-pyrifera_M_contig87380:478..8291692278175.718205-CDS-M-pyrifera_M_contig87380:478..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87380 479..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87380.20311.1prot_M-pyrifera_M_contig87380.20311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87380 479..829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87380.20311.1

>prot_M-pyrifera_M_contig87380.20311.1 ID=prot_M-pyrifera_M_contig87380.20311.1|Name=mRNA_M-pyrifera_M_contig87380.20311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
VGLKRRADVLEEIRKADFLVNSSLSEGSPGAVLEAMALHTPTILRKRPWS
AQFEATPPIALFFHDRASLLEILATTTPSTRESIAANAKAFIDTHFHPRR
ERHQWTQLLDKVAPPS*
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mRNA from alignment at M-pyrifera_M_contig87380:479..829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87380.20311.1 ID=mRNA_M-pyrifera_M_contig87380.20311.1|Name=mRNA_M-pyrifera_M_contig87380.20311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig87380:479..829- (Macrocystis pyrifera P11B4 male)
GTTGGGTTGAAGCGTAGAGCAGACGTGTTGGAGGAAATTCGAAAGGCAGA CTTCCTCGTGAATTCCTCGCTTTCTGAAGGTTCTCCAGGGGCAGTGTTGG AAGCAATGGCTCTCCACACCCCCACAATCCTCAGGAAACGACCTTGGAGC GCACAATTCGAGGCCACGCCGCCCATCGCGCTGTTTTTCCACGACAGGGC GAGTCTCCTCGAAATTCTCGCCACAACCACACCCTCCACGAGAGAATCCA TCGCCGCAAACGCCAAAGCGTTCATTGACACGCACTTTCACCCGCGCAGG GAGAGACACCAGTGGACACAGCTCCTCGACAAAGTCGCACCGCCCTCGTG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87380:479..829-

>mRNA_M-pyrifera_M_contig87380.20311.1 ID=mRNA_M-pyrifera_M_contig87380.20311.1|Name=mRNA_M-pyrifera_M_contig87380.20311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig87380:479..829- (Macrocystis pyrifera P11B4 male)
GTTGGGTTGAAGCGTAGAGCAGACGTGTTGGAGGAAATTCGAAAGGCAGA
CTTCCTCGTGAATTCCTCGCTTTCTGAAGGTTCTCCAGGGGCAGTGTTGG
AAGCAATGGCTCTCCACACCCCCACAATCCTCAGGAAACGACCTTGGAGC
GCACAATTCGAGGCCACGCCGCCCATCGCGCTGTTTTTCCACGACAGGGC
GAGTCTCCTCGAAATTCTCGCCACAACCACACCCTCCACGAGAGAATCCA
TCGCCGCAAACGCCAAAGCGTTCATTGACACGCACTTTCACCCGCGCAGG
GAGAGACACCAGTGGACACAGCTCCTCGACAAAGTCGCACCGCCCTCGTG
AGTTGGGTTGAAGCGTAGAGCAGACGTGTTGGAGGAAATTCGAAAGGCAG
ACTTCCTCGTGAATTCCTCGCTTTCTGAAGGTTCTCCAGGGGCAGTGTTG
GAAGCAATGGCTCTCCACACCCCCACAATCCTCAGGAAACGACCTTGGAG
CGCACAATTCGAGGCCACGCCGCCCATCGCGCTGTTTTTCCACGACAGGG
CGAGTCTCCTCGAAATTCTCGCCACAACCACACCCTCCACGAGAGAATCC
ATCGCCGCAAACGCCAAAGCGTTCATTGACACGCACTTTCACCCGCGCAG
GGAGAGACACCAGTGGACACAGCTCCTCGACAAAGTCGCACCGCCCTCGT
GA
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