mRNA_M-pyrifera_M_contig87379.20310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87379.20310.1
Unique NamemRNA_M-pyrifera_M_contig87379.20310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A5A8CNS1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNS1_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 4.200e-14
Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   22 KTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGL 171
            KTKVRRLYDIANVLQ+L LV KV L     TRK AFAWRGVGSVPLLPGL
Sbjct:  591 KTKVRRLYDIANVLQSLGLVHKVSLAT-LPTRKAAFAWRGVGSVPLLPGL 639
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A3P8WTW8_CYNSE (E2F transcription factor 8 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WTW8_CYNSE)

HSP 1 Score: 62.4 bits (150), Expect = 9.120e-10
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNT 183
            FKTKVRRLYDIANVL++L+L+ KV + DQ   RKPAF W G    P +  L R+T
Sbjct:  267 FKTKVRRLYDIANVLRSLKLIEKVHVTDQRG-RKPAFEWIGPVEFPHIKDLERST 320
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A8D3A6E3_SCOMX (E2F transcription factor 8 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3A6E3_SCOMX)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHAM 192
            FKTKVRRLYDIANVL++L+L+ KV + ++   RKPAF W G    P + G+ R T+ +
Sbjct:  297 FKTKVRRLYDIANVLRSLKLIEKVHVTEERG-RKPAFEWVGPVEFPQVKGIARYTNVL 353
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A3B4UVX3_SERDU (E2F transcription factor 8 n=5 Tax=Carangaria TaxID=1489904 RepID=A0A3B4UVX3_SERDU)

HSP 1 Score: 61.6 bits (148), Expect = 1.710e-9
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHAMP 195
            FKTKVRRLYDIANVL++L+L+ KV + ++   RKPAF W G+   P +  L ++T   P
Sbjct:  314 FKTKVRRLYDIANVLRSLKLIEKVHVTEERG-RKPAFEWVGLEEFPQVKDLEKSTSECP 371
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A665V0J0_ECHNA (E2F transcription factor 8 n=2 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665V0J0_ECHNA)

HSP 1 Score: 61.2 bits (147), Expect = 2.330e-9
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNT 183
            FKTKVRRLYDIANVL++L+L+ KV + ++   RKPAF W G+   P + G+ R++
Sbjct:  289 FKTKVRRLYDIANVLRSLKLIEKVHVTEERG-RKPAFEWVGLEEFPEVKGIARSS 342
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: W7TPJ9_9STRA (Transcription factor e2f7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPJ9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.800e-9
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 NPTDAAFKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGV--GSVPLLP----GLPRNTHAMPG 198
            N  D   KTKVRRLYDIANVL +L+L+ KV + D   +RKP+F W G+  G +  LP    G PR+   +PG
Sbjct:  177 NLNDRGMKTKVRRLYDIANVLTSLQLIAKVHVTD---SRKPSFKWVGLSLGEIYALPPFSIGGPRDFPGVPG 245
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: UPI001C42B136 (transcription factor E2F8 n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C42B136)

HSP 1 Score: 60.1 bits (144), Expect = 5.950e-9
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 NPTDAAFKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHAMP 195
            +P    FKTKVRRLYDIANVL++L+L+ KV + D+   RKPAF W G    P +  L   T   P
Sbjct:  254 DPDKNKFKTKVRRLYDIANVLRSLKLIEKVHVTDKRG-RKPAFEWVGPVEFPQIKDLESFTSECP 317
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A4W6EL68_LATCA (E2F transcription factor 8 n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6EL68_LATCA)

HSP 1 Score: 59.7 bits (143), Expect = 8.050e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHAMP 195
            FKTKVRRLYDIANVL++L+L+ KV + ++   RKPAF W G+   P +  L  +T   P
Sbjct:  266 FKTKVRRLYDIANVLRSLKLIEKVHVTEERG-RKPAFEWVGLVEFPEVKDLESSTSECP 323
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: G1MTU9_MELGA (E2F transcription factor 8 n=2 Tax=Meleagris gallopavo TaxID=9103 RepID=G1MTU9_MELGA)

HSP 1 Score: 59.7 bits (143), Expect = 8.110e-9
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHA 189
            FKTK+RRLYDIANVL ++ L+ KV + ++   RKPAF W G       P +P NTHA
Sbjct:  207 FKTKIRRLYDIANVLSSIELIKKVHITEERG-RKPAFKWTG-------PEVPPNTHA 255
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BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Match: A0A8D0H7U6_SPHPU (E2F transcription factor 8 n=4 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0H7U6_SPHPU)

HSP 1 Score: 59.7 bits (143), Expect = 8.130e-9
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   19 FKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGSVPLLPGLPRNTHAMP 195
            FKTK+RRLYDIANVL +L L+ KV ++++   RKPAF W G   +P    +P  T  +P
Sbjct:  303 FKTKIRRLYDIANVLSSLELIKKVHVKEERG-RKPAFKWIGPHILPYTNPVPTTTTIVP 360
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87379.20310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CNS1_CAFRO4.200e-1480.00Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A3P8WTW8_CYNSE9.120e-1058.18E2F transcription factor 8 n=1 Tax=Cynoglossus sem... [more]
A0A8D3A6E3_SCOMX1.230e-951.72E2F transcription factor 8 n=1 Tax=Scophthalmus ma... [more]
A0A3B4UVX3_SERDU1.710e-950.85E2F transcription factor 8 n=5 Tax=Carangaria TaxI... [more]
A0A665V0J0_ECHNA2.330e-952.73E2F transcription factor 8 n=2 Tax=Echeneis naucra... [more]
W7TPJ9_9STRA5.800e-948.61Transcription factor e2f7 n=1 Tax=Nannochloropsis ... [more]
UPI001C42B1365.950e-949.23transcription factor E2F8 n=1 Tax=Solea senegalens... [more]
A0A4W6EL68_LATCA8.050e-950.85E2F transcription factor 8 n=1 Tax=Lates calcarife... [more]
G1MTU9_MELGA8.110e-952.63E2F transcription factor 8 n=2 Tax=Meleagris gallo... [more]
A0A8D0H7U6_SPHPU8.130e-949.15E2F transcription factor 8 n=4 Tax=Sphenodon punct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87379contigM-pyrifera_M_contig87379:11..208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog244447.XP_008335200.1
Preferred nameE2f8
KEGG koko:K09391
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000278,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001047,GO:0001067,GO:0001078,GO:0001227,GO:0001525,GO:0001568,GO:0001701,GO:0001889,GO:0001890,GO:0001892,GO:0001944,GO:0002040,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006275,GO:0006355,GO:0006357,GO:0007049,GO:0007275,GO:0008150,GO:0008283,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0019219,GO:0019222,GO:0022414,GO:0030154,GO:0030855,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032875,GO:0032877,GO:0033301,GO:0035239,GO:0035295,GO:0042802,GO:0042803,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045740,GO:0045786,GO:0045787,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046983,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048608,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051302,GO:0051726,GO:0051782,GO:0060255,GO:0060429,GO:0060706,GO:0060707,GO:0060717,GO:0060718,GO:0061008,GO:0061458,GO:0065007,GO:0070013,GO:0070365,GO:0072358,GO:0072359,GO:0080090,GO:0090068,GO:0090329,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903867,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E2F/DP family winged-helix DNA-binding domain
EggNOG OGs39SUF@33154,3BFPZ@33208,3D0UH@33213,48R01@7711,49MJY@7742,4A961@7898,KOG2577@1,KOG2578@2759
COG Functional cat.K
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.9679291-CDS-M-pyrifera_M_contig87379:10..2081622816782.9679291-CDS-M-pyrifera_M_contig87379:10..208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87379 11..208 +
1692278175.7043872-CDS-M-pyrifera_M_contig87379:10..2081692278175.7043872-CDS-M-pyrifera_M_contig87379:10..208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87379 11..208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87379.20310.1prot_M-pyrifera_M_contig87379.20310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87379 11..208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87379.20310.1

>prot_M-pyrifera_M_contig87379.20310.1 ID=prot_M-pyrifera_M_contig87379.20310.1|Name=mRNA_M-pyrifera_M_contig87379.20310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
NPTDAAFKTKVRRLYDIANVLQALRLVVKVQLRDQAATRKPAFAWRGVGS
VPLLPGLPRNTHAMPG
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mRNA from alignment at M-pyrifera_M_contig87379:11..208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87379.20310.1 ID=mRNA_M-pyrifera_M_contig87379.20310.1|Name=mRNA_M-pyrifera_M_contig87379.20310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig87379:11..208+ (Macrocystis pyrifera P11B4 male)
AACCCCACAGATGCAGCATTCAAGACAAAAGTACGGCGATTGTATGATAT
TGCAAACGTTTTGCAAGCCTTGCGTTTGGTAGTCAAGGTACAACTTCGTG
ATCAAGCTGCAACCAGAAAGCCTGCTTTTGCCTGGCGTGGAGTAGGTTCT
GTTCCACTCCTTCCAGGTCTTCCACGCAACACACATGCAATGCCTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87379:11..208+

>mRNA_M-pyrifera_M_contig87379.20310.1 ID=mRNA_M-pyrifera_M_contig87379.20310.1|Name=mRNA_M-pyrifera_M_contig87379.20310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig87379:11..208+ (Macrocystis pyrifera P11B4 male)
AACCCCACAGATGCAGCATTCAAGACAAAAGTACGGCGATTGTATGATAT
TGCAAACGTTTTGCAAGCCTTGCGTTTGGTAGTCAAGGTACAACTTCGTG
ATCAAGCTGCAACCAGAAAGCCTGCTTTTGCCTGGCGTGGAGTAGGTTCT
GTTCCACTCCTTCCAGGTCTTCCACGCAACACACATGCAATGCCTGGTAA
CCCCACAGATGCAGCATTCAAGACAAAAGTACGGCGATTGTATGATATTG
CAAACGTTTTGCAAGCCTTGCGTTTGGTAGTCAAGGTACAACTTCGTGAT
CAAGCTGCAACCAGAAAGCCTGCTTTTGCCTGGCGTGGAGTAGGTTCTGT
TCCACTCCTTCCAGGTCTTCCACGCAACACACATGCAATGCCTGGT
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