mRNA_M-pyrifera_M_contig87365.20301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig87365.20301.1
Unique Name	mRNA_M-pyrifera_M_contig87365.20301.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A7X5WP77_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WP77_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 1.050e-45
Identity = 69/90 (76.67%), Postives = 82/90 (91.11%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            FELNRSLTGMGHERY AG+EIL DRP D+LARRI  +G+VE +H+YG+VVTVT+ ++DP D+ETV+RELYTYYVPGVEIPSD+ELIAMVE
Sbjct:   20 FELNRSLTGMGHERYRAGEEILGDRPPDLLARRILEAGEVEVVHIYGNVVTVTMHTTDPADLETVVRELYTYYVPGVEIPSDDELIAMVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A7K1Z8D9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z8D9_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 1.600e-40
Identity = 64/90 (71.11%), Postives = 78/90 (86.67%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            FELNRSLTGMGHE Y AGDEIL DRP DVLARRIF  G+V +IH+Y S+VT+T ++++ GD+E+V+ +L+TYYVPGVEIP DEELIAMVE
Sbjct:   20 FELNRSLTGMGHESYAAGDEILGDRPPDVLARRIFELGNVSSIHMYSSMVTITFATTEQGDLESVVSDLFTYYVPGVEIPDDEELIAMVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A2E8L7L8_9ACTN (Nfu_N domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L7L8_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 1.810e-39
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            FELNRSLTGMGH RY+ GDEI  D P+  LA+R+F  G V A+HVYGS+VTVTL+SSD GD+ETV+  LYTYY+PGVEIPSDEELIAMVE
Sbjct:   20 FELNRSLTGMGHVRYDMGDEIQADDPASELAKRLFDVGGVSAVHVYGSMVTVTLASSDFGDLETVIGGLYTYYLPGVEIPSDEELIAMVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A7K2A7T2_9ACTN (Uncharacterized protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A7T2_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 7.240e-37
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            FELNR++TGMGHERY AG+EIL DRPSD LARR+ A+G + ++H++GSV+T  L+ +D   +  V+  LYTYYVPGVEIPSDEELIAMVE
Sbjct:   20 FELNRTITGMGHERYRAGEEILGDRPSDELARRMLATGRLSSLHIHGSVITAELAGADDSGLGDVIASLYTYYVPGVEIPSDEELIAMVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A7Y3EUC7_9ACTN (Nfu_N domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3EUC7_9ACTN)

HSP 1 Score: 122 bits (307), Expect = 1.980e-34
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            + LNR+LTGMGHER+ A D+I+ DRP+D LARR+FA+GDV  + + G+VVTV L+SSD   ++ V+ +LYTYYVPGVE+PSDEEL+A V+
Sbjct:   20 YVLNRALTGMGHERFRADDDIIGDRPADELARRLFATGDVAGVSINGNVVTVELASSDSSGLKDVIEDLYTYYVPGVEVPSDEELMAQVD 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A3M2GKD8_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GKD8_ACTSX)

HSP 1 Score: 118 bits (296), Expect = 9.090e-33
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIA 261
            +ELNR+LTGMGHERY AG+EI   RP+D LARR+FA G +EA+HVYG  VTV L+ +D   I  ++R+LY Y+VPG E+P+DEEL+A
Sbjct:   20 YELNRNLTGMGHERYRAGEEIRGHRPADELARRLFARGGIEAVHVYGHTVTVELAEADDSGIADIIRDLYQYWVPGREVPADEELMA 106

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A520Y152_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y152_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 3.620e-30
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            + +NR+L+GMGHERY  G EI+ DRP+D LARR+  +G V  + + G+VVTV LS +D   +  V+ +LYTYYVPGVEIPSDEEL+A VE
Sbjct:   20 YVMNRALSGMGHERYTEGTEIMGDRPTDELARRLIDTGKVTGVSINGNVVTVELSGADHEGLRDVIEDLYTYYVPGVEIPSDEELMAQVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A7Y2GKK1_9ACTN (Nfu_N domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GKK1_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 2.090e-29
Identity = 47/90 (52.22%), Postives = 70/90 (77.78%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEELIAMVE 270
            FE NR LTGMGHERY++  + +DD PSD LARR+F  G V+++H+  +++TVTL+++D   I  ++ +LYTY+ PG+E P+DEEL+A+VE
Sbjct:   20 FETNRVLTGMGHERYQSRADAVDDTPSDELARRLFDRGGVQSLHINSNIITVTLATADSSGIREIIEDLYTYWQPGMEPPTDEELVALVE 109

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BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A2E5NUL8_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NUL8_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 6.730e-28
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDPGDIETVLRELYTYYVPGVEIPSDEEL 255
            +E NRSLTGMGHERY AGDEIL   PSD LARR+F  G +  +HVYG+VV+V L+ +    IE ++  LY Y+V GVE+PSD EL
Sbjct:   20 YETNRSLTGMGHERYRAGDEILGTAPSDELARRLFDRGGIAGVHVYGNVVSVELADAGVEGIEDIIAGLYLYWVEGVEVPSDAEL 104

[Close]

BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Match: A0A538D767_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D767_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 6.930e-28
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1

Query:    1 FELNRSLTGMGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTL-SSSDPGDIETVLRELYTYYVPGVEIPSDEELIA 261
            FE NR LTGMGHERY    + + DRP+DVLARR+F  G ++A+HV GSVVTV L  ++D   I+ ++  LYTYY+PGVE PSD+ELIA
Sbjct:   20 FETNRVLTGMGHERYTHLGQAVSDRPADVLARRLFDRGGIKAVHVNGSVVTVELLDNADASGIKAIIEGLYTYYLPGVEPPSDDELIA 107

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig87365.20301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7X5WP77_9ACTN	1.050e-45	76.67	Uncharacterized protein n=1 Tax=Actinomycetia bact...	[more]
A0A7K1Z8D9_9ACTN	1.600e-40	71.11	Uncharacterized protein n=2 Tax=Acidimicrobiaceae ...	[more]
A0A2E8L7L8_9ACTN	1.810e-39	73.33	Nfu_N domain-containing protein n=6 Tax=Acidimicro...	[more]
A0A7K2A7T2_9ACTN	7.240e-37	65.56	Uncharacterized protein n=7 Tax=Acidimicrobiaceae ...	[more]
A0A7Y3EUC7_9ACTN	1.980e-34	61.11	Nfu_N domain-containing protein n=1 Tax=Acidimicro...	[more]
A0A3M2GKD8_ACTSX	9.090e-33	60.92	Uncharacterized protein n=1 Tax=Actinomyces sp. Ta...	[more]
A0A520Y152_9ACTN	3.620e-30	57.78	Uncharacterized protein n=1 Tax=Acidimicrobiales b...	[more]
A0A7Y2GKK1_9ACTN	2.090e-29	52.22	Nfu_N domain-containing protein n=1 Tax=Acidimicro...	[more]
A0A2E5NUL8_9ACTN	6.730e-28	58.82	Uncharacterized protein n=2 Tax=Acidimicrobiaceae ...	[more]
A0A538D767_9ACTN	6.930e-28	59.09	Uncharacterized protein n=1 Tax=Actinomycetia bact...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig87365	contig	M-pyrifera_M_contig87365:3..275 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	66.6
Seed ortholog evalue	6.1e-09
Seed eggNOG ortholog	1313172.YM304_29470
Hectar predicted targeting category	other localisation
EggNOG OGs	2C1D9@1,2HBJG@201174,2ZD16@2
Best tax level	Actinobacteria
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	273
Cds size	246
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816782.6075854-UTR-M-pyrifera_M_contig87365:2..29	1622816782.6075854-UTR-M-pyrifera_M_contig87365:2..29	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig87365 3..29 +
1692278175.5316846-UTR-M-pyrifera_M_contig87365:2..29	1692278175.5316846-UTR-M-pyrifera_M_contig87365:2..29	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig87365 3..29 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816782.6182413-CDS-M-pyrifera_M_contig87365:29..275	1622816782.6182413-CDS-M-pyrifera_M_contig87365:29..275	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig87365 30..275 +
1692278175.5436754-CDS-M-pyrifera_M_contig87365:29..275	1692278175.5436754-CDS-M-pyrifera_M_contig87365:29..275	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig87365 30..275 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig87365.20301.1	prot_M-pyrifera_M_contig87365.20301.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig87365 30..275 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig87365:3..275+
coding sequence from alignment at M-pyrifera_M_contig87365:3..275+

protein sequence of mRNA_M-pyrifera_M_contig87365.20301.1

>prot_M-pyrifera_M_contig87365.20301.1 ID=prot_M-pyrifera_M_contig87365.20301.1|Name=mRNA_M-pyrifera_M_contig87365.20301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MGHERYEAGDEILDDRPSDVLARRIFASGDVEAIHVYGSVVTVTLSSSDP
GDIETVLRELYTYYVPGVEIPSDEELIAMVE*

mRNA from alignment at M-pyrifera_M_contig87365:3..275+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig87365.20301.1 ID=mRNA_M-pyrifera_M_contig87365.20301.1|Name=mRNA_M-pyrifera_M_contig87365.20301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:3..275+ (Macrocystis pyrifera P11B4 male)
TTCGAGCTCAACCGCAGCCTCACCGGCATGGGGCACGAGCGCTACGAGGC
GGGCGACGAGATCCTCGACGATCGGCCCTCCGACGTGCTCGCCCGCCGCA
TCTTCGCCTCCGGTGATGTCGAGGCCATCCACGTCTACGGATCGGTCGTC
ACCGTCACCCTGTCTTCCAGCGACCCCGGCGACATCGAGACGGTGTTGCG
CGAGCTCTACACGTACTACGTGCCCGGCGTGGAGATTCCCAGCGATGAAG
AACTCATCGCCATGGTGGAGTAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87365:3..275+

>mRNA_M-pyrifera_M_contig87365.20301.1 ID=mRNA_M-pyrifera_M_contig87365.20301.1|Name=mRNA_M-pyrifera_M_contig87365.20301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:3..275+ (Macrocystis pyrifera P11B4 male)
ATGGGGCACGAGCGCTACGAGGCGGGCGACGAGATCCTCGACGATCGGCC
CTCCGACGTGCTCGCCCGCCGCATCTTCGCCTCCGGTGATGTCGAGGCCA
TCCACGTCTACGGATCGGTCGTCACCGTCACCCTGTCTTCCAGCGACCCC
GGCGACATCGAGACGGTGTTGCGCGAGCTCTACACGTACTACGTGCCCGG
CGTGGAGATTCCCAGCGATGAAGAACTCATCGCCATGGTGGAGTAGATGG
GGCACGAGCGCTACGAGGCGGGCGACGAGATCCTCGACGATCGGCCCTCC
GACGTGCTCGCCCGCCGCATCTTCGCCTCCGGTGATGTCGAGGCCATCCA
CGTCTACGGATCGGTCGTCACCGTCACCCTGTCTTCCAGCGACCCCGGCG
ACATCGAGACGGTGTTGCGCGAGCTCTACACGTACTACGTGCCCGGCGTG
GAGATTCCCAGCGATGAAGAACTCATCGCCATGGTGGAGTAG