mRNA_M-pyrifera_M_contig87362.20300.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A812W4G2_9DINO (Usp4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W4G2_9DINO) HSP 1 Score: 248 bits (632), Expect = 2.070e-72 Identity = 127/241 (52.70%), Postives = 158/241 (65.56%), Query Frame = 1 Query: 1 MSSWYRHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLP-VSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLAS 720 M S+ RH G+P GTVGL NLGNTCFMNSMLQCL A PL+++F++G+ E E+NPDN L G+I AYA L +SG + + SPS +K EVG PQF G+ Q DS E +SFLLD IHED+NR+LKKP E + S GRPD VVA EAW + RN S+VVD F Q RS +TCN CG S+TFD T +SVP+ + LVFTF P A H +RYR + + G DI +WL + Sbjct: 273 MGSFARHRAGRPHEPGTVGLDNLGNTCFMNSMLQCLNACEPLTQHFLDGKWEAEVNPDNVLGQGGRIASAYAALLEAMWSGKYSVCSPSVVKSEVGRASPQFQGFQQHDSQELMSFLLDGIHEDLNRILKKPYVEDVSSLGRPDPVVALEAWRRYKMRNDSVVVDTFTGQFRSHLTCNMCGNQSITFDPFTSVSVPVSEFESKKTLVFTFTPADPALHCVRYRSFVPKHGVLGDIVEWLTT 513
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A7S1TXN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXN4_9STRA) HSP 1 Score: 215 bits (548), Expect = 5.210e-66 Identity = 108/224 (48.21%), Postives = 140/224 (62.50%), Query Frame = 1 Query: 16 RHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFI--PYLSAPHTLRYRPKLGE 681 R+ G PL G VGLQNLGNTCFMNSMLQCLLA P L YF++G E+N NPL S G++ RA+A L A+ G + ++ PS+LK +G QFAGY QQDS EF++F LD +HED+NR+ K TE +ES G+ D+VVAAE W HL RN S++VD F +S + C+ CGY S TFD L++PLP R + I P + P + R + E Sbjct: 74 RNLSGAPLAPGVVGLQNLGNTCFMNSMLQCLLAAPCLVNYFLSGAAAAEVNERNPLGSQGRLARAFAALVSQAWGGDYHVVCPSELKYVIGTLNAQFAGYSQQDSQEFMAFCLDGLHEDLNRIQAKTTTEGVESRGQEDSVVAAERWRRHLLRNHSVIVDQFHGLLKSHLKCDLCGYESTTFDPYLSLTLPLPQQATRKIAVLVIRQPMSTVPFQVELRLRTDE 297
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A7R9YEL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEL1_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.560e-65 Identity = 111/231 (48.05%), Postives = 146/231 (63.20%), Query Frame = 1 Query: 25 EGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLA 717 GKP +AG VGL+NLGNTCFMNSMLQC+ TP L+ +F+NG ++N NPL GK+ YA +D + G+ +++P+ LKR VG P FAGY QQDS EF+SFLLD +HED+NR +KP TE +ES GRPD VA E W HL RN S+VVD+ RS +TC +CGYNS+TFD LS+PLPV+ R + +P + + R + D+ W+A Sbjct: 500 RGKPPIAGAVGLKNLGNTCFMNSMLQCISHTPQLTGFFLNGGWRDDVNKSNPLGMQGKLATVYADFLKDVWGGNHTVVAPTTLKRTVGTFNPTFAGYAQQDSQEFMSFLLDGLHEDLNRNHEKPYTEQVESKGRPDEEVAKEQWRRHLLRNDSVVVDNCHGLLRSHLTCCKCGYNSITFDPFLSLSLPLPVNNTRRVDLVVMPAALSENPYRMTVDMQTNACLGDVKRWIA 730
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A836CC49_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC49_9STRA) HSP 1 Score: 215 bits (548), Expect = 2.070e-64 Identity = 106/195 (54.36%), Postives = 133/195 (68.21%), Query Frame = 1 Query: 19 HTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSR 603 +T G P G VGL NLGNTCFMNSMLQCL AT L+ YF +G ++N DN L +DGK+ RAYA L R+ + G + ++P+ LKR +G P FAGY QQDS E + FLLD +HED+NRV +KP E +ESDGRPDAVVA ++W +L RN S++VD RS VTC C Y S+TFD T LS+PLP +R Sbjct: 47 NTVGTPAEPGAVGLHNLGNTCFMNSMLQCLSATGALTAYFKSGGWSVDLNEDNALGADGKMARAYAELVRNLWDGRYTQVAPAALKRVIGEHAPAFAGYQQQDSQELMIFLLDGLHEDLNRVRRKPYVEAVESDGRPDAVVAEDSWRRYLLRNDSVLVDRCHGLLRSHVTCPACNYESITFDAYTCLSLPLPGAR 241
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: X6NK68_RETFI (Ubiquitin carboxyl-terminal hydrolase 11 n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NK68_RETFI) HSP 1 Score: 225 bits (573), Expect = 4.210e-64 Identity = 114/220 (51.82%), Postives = 147/220 (66.82%), Query Frame = 1 Query: 4 SSWY--RHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTL 657 SSWY H EG P G VGL+NLGNTCFMNS +QCL +P L+ YF+ G IN NPL GK+ +A+A L +D FS +++++P + K +G P+F GY QQDS E LSFLLD +HED+N+V +KP TE +ES+GRPD VVAAEAW T+LKRN S +VD Q +S V C +CG S+TFD LSVPLP R + L FT++ +AP T+ Sbjct: 378 SSWYGYSHDEGTPEQKGVVGLRNLGNTCFMNSTIQCLAQSPYLTEYFLKGDFIHHINHKNPLGWKGKVAQAWAQLLQDMFSNKYKVIAPREFKTAIGEVAPRFMGYSQQDSQELLSFLLDGLHEDLNQVQEKPATEAVESNGRPDEVVAAEAWRTYLKRNISAIVDLLQGQYKSRVECPDCGRVSITFDPYMFLSVPLPTERYKMLEFTWVGDPNAPPTV 597
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A6S8CHP7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CHP7_9STRA) HSP 1 Score: 219 bits (557), Expect = 3.800e-63 Identity = 112/234 (47.86%), Postives = 147/234 (62.82%), Query Frame = 1 Query: 19 HTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNG-REEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLA 717 H +G P G VGL NLGNTCFMNSMLQCL T L YF+N R + E+N DNPL S G I RAYA D++SG + I+ P+ LK+ VG + QF GY QQDS EF+S+LLD +HED+NRV KKP E +ES+GRPD VVA E+W+ RN+SI++D F RS +TC CG+ S+TFD LS+PLP ++ R + T + +Y +L + + + LA Sbjct: 468 HHKGTPPAPGAVGLSNLGNTCFMNSMLQCLSHTKQLREYFLNAERVQSELNEDNPLGSGGNIARAYADFISDSWSGDYAIIVPTILKKAVGQQASQFLGYQQQDSQEFMSYLLDGLHEDLNRVRKKPYIETLESNGRPDQVVANESWDRFQLRNKSIIIDTFYGLLRSHITCPNCGHESITFDPYNTLSLPLPSAKIRRITIT-LSRADGSRPTKYLVQLSSRDTITQLKQGLA 700
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A2G9RJ31_LITCT (Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ31_LITCT) HSP 1 Score: 212 bits (540), Expect = 1.060e-62 Identity = 117/246 (47.56%), Postives = 153/246 (62.20%), Query Frame = 1 Query: 1 MSSW-YRHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHT--LRYRPKLGEEGSFSDIADWLASCND 729 MSS+ YR KP G GL NLGNTCFMNS LQCL TPPL+ YF+ + EIN +NPL G+I AYA L R +SG ++P K +VG PQF+GY QQDS E L+FLLD +HED+NRV KKP E ++DGRPD+VVA EAW+ HL+RN SI+VD F +S + C EC S+TFD L++PLP+ + R + + S PH +YR + + G+ SD+ L+ +D Sbjct: 87 MSSYSYREPSSKP---GLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLTDDYKEEINKENPLGMKGEIAMAYAELIRQIWSGEHSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDADGRPDSVVAKEAWDNHLRRNNSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPMRKDRTMEVFLV--RSDPHCKPTQYRLVVPKMGTVSDLCAALSKLSD 327
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: UPI000854F5AC (LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 4-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854F5AC) HSP 1 Score: 210 bits (535), Expect = 2.250e-62 Identity = 113/243 (46.50%), Postives = 149/243 (61.32%), Query Frame = 1 Query: 1 MSSWYRHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLASCND 729 MS YR KP G GL NLGNTCFMNS LQCL TPPL+ YF++ + EIN +NPL G+I AYA L R +SG ++P K +VG PQF+GY QQDS E L+FLLD +HED+NRV KKP E ++DGRPD+VVA EAW+ HL+RN SI+VD F +S + C EC S+TFD L++PLP+ + R + + +YR + + G+ SD+ L+ +D Sbjct: 7 MSYNYREPSSKP---GLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLSDDYKEEINKENPLGMKGEIAMAYAELIRQIWSGEHSYVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDADGRPDSVVAKEAWDNHLRRNYSIIVDIFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPMRKDRTMEVFLVRSDPQCKPTQYRLVVPKMGAVSDLCAALSKLSD 246
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A0L0DRB5_THETB (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRB5_THETB) HSP 1 Score: 218 bits (556), Expect = 7.340e-62 Identity = 117/248 (47.18%), Postives = 149/248 (60.08%), Query Frame = 1 Query: 4 SSW----YRHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTC--NECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLASCND 729 S+W Y GKP V G GL NLGNTCFMNS LQCL T L+ YF++G ++N NPL +GK+ YA L RD +SG + +SP+ K +G PQF+G+ Q DS E L FLLD +HED+NRVL KPPTE +ESDGRPDA VAAEAWE HL RN+S +VD F Q +S V C CG S+TFD L +PLPV + LV + L P ++ ++ + +D+ LA D Sbjct: 344 SAWSRTSYGSRPGKPPVRGATGLSNLGNTCFMNSALQCLSNTTVLTEYFLSGAYTDDVNTTNPLGMEGKLATVYAELVRDLWSGQYTSVSPTRFKALIGKFAPQFSGFQQHDSQELLGFLLDGLHEDLNRVLDKPPTEKLESDGRPDAEVAAEAWERHLLRNKSFIVDTFQAQFKSTVVCPAEGCGRVSITFDPYLYLQLPLPVKNSK-LVHAVVSSLDKP-AIKVAVQVSVHSTLADVRQQLAETLD 589
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Match: A0A8C5RKK1_LATLA (USP domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5RKK1_LATLA) HSP 1 Score: 206 bits (524), Expect = 1.010e-61 Identity = 105/235 (44.68%), Postives = 148/235 (62.98%), Query Frame = 1 Query: 16 RHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGREEGEINPDNPLSSDGKIVRAYAHLTRDAFSGSFRILSPSDLKREVGIKCPQFAGYDQQDSHEFLSFLLDNIHEDVNRVLKKPPTEPIESDGRPDAVVAAEAWETHLKRNRSIVVDHFGFQTRSDVTCNECGYNSLTFDYSTVLSVPLPVSRPRPLVFTFIPYLSAPHTLRYRPKLGEEGSFSDIADWLAS 720 RH E +P G GL NLGNTCFMNS +QCL TPPL+ YF+N + + E+N DNPL G+I ++YA L + +SG + ++P K +VG PQF+GY QQD E L+FLLD +HED+NR+ KKP + ++DGRPD +VA EAWE HLKRN SI+VD F +S + C EC S+TFD L++PLP+ + R L + ++Y+ + + G+ D+ L++ Sbjct: 24 RHNE-QP---GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNYDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKIVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRLDPLSKPMQYKVVVPKIGNIQDLCIALST 254 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87362.20300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig87362.20300.1 >prot_M-pyrifera_M_contig87362.20300.1 ID=prot_M-pyrifera_M_contig87362.20300.1|Name=mRNA_M-pyrifera_M_contig87362.20300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=243bp MSSWYRHTEGKPLVAGTVGLQNLGNTCFMNSMLQCLLATPPLSRYFVNGRback to top mRNA from alignment at M-pyrifera_M_contig87362:5..733+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig87362.20300.1 ID=mRNA_M-pyrifera_M_contig87362.20300.1|Name=mRNA_M-pyrifera_M_contig87362.20300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=729bp|location=Sequence derived from alignment at M-pyrifera_M_contig87362:5..733+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig87362:5..733+ >mRNA_M-pyrifera_M_contig87362.20300.1 ID=mRNA_M-pyrifera_M_contig87362.20300.1|Name=mRNA_M-pyrifera_M_contig87362.20300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1458bp|location=Sequence derived from alignment at M-pyrifera_M_contig87362:5..733+ (Macrocystis pyrifera P11B4 male)back to top |