mRNA_M-pyrifera_M_contig87230.20281.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87230.20281.1
Unique NamemRNA_M-pyrifera_M_contig87230.20281.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A366HUX7_9BACT (Archaemetzincin n=2 Tax=Roseimicrobium gellanilyticum TaxID=748857 RepID=A0A366HUX7_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 2.020e-11
Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   34 WLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGGKGPSVDALASMAVCFFGIPIVVPKPLAIPS-----RRAREGAEGQDQIH--TQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            WL + KE  Q F++F     R+ R    ++ N    +P    I G      KGP++  L   A  +FG+P+ +   + + S     RR R+G   ++ +   + D L  + G+V +              +GIT+ DLYP ESWNFVFG A  ++RVGV
Sbjct:   92 WLAQHKERRQTFESF----QRTPRNIPSSIANTIYVLPLGAFIEG------KGPALTDLQEFAGAYFGLPVKMLPGIPLESNKAITRRTRDGTRDEELVQYLSTDILKAMLGHVPKDA---------FCVIGITMEDLYPEESWNFVFGQATYADRVGV 231          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: UPI001CCEDA85 (archaemetzincin n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCEDA85)

HSP 1 Score: 70.1 bits (170), Expect = 3.380e-11
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   34 WLMERKESGQGFDTFA-RKASRSARGRVFALENKKMGIPQPLAIVGFGDV-GGKGPSVDALASMAVCFFGIPIVVPKPLAIPSRRAREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAA---VGITLADLYPRESWNFVFGLARASERVGV 489
            WL +  E+GQ F  F  ++ +R  + R            + L ++  G + GG+ P++  +A  A  FF +P+     LA P+  A   A G+D+       G+   Y  R +  G +  +PA A   +G+T+ADLYP  SWNFVFG A   ERVGV
Sbjct:   72 WLGQHAETGQTFAEFVVQRHARPGQTR------------RKLTMLPIGAIEGGEWPALAVVADFAARFFQLPV----ELATPTTMADLAARGRDR-------GDFYQYDTRTILAGMKRRVPADAYTLIGVTIADLYPGPSWNFVFGYASFDERVGV 205          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A847LBR0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Riflebacteria bacterium TaxID=2053586 RepID=A0A847LBR0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.630e-11
Identity = 57/165 (34.55%), Postives = 75/165 (45.45%), Query Frame = 1
Query:   10 LGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGGKGPSVDALASMAVCFFG-----IPIVVPKPLAIPSRRAREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            LG+   G WL    E GQGFD +     R+AR    A     + +   L +  F    G+ PS+ AL +    FF      +P   P P     RR  +   GQ Q  T D L  L+  VG  +          + VG+T+ DLYP  SWNFVFG A  S+RVG+
Sbjct:   62 LGKPRPGDWLSVFPEPGQGFDRY-----RAARPNRLAAPRTVIAL---LPLWEFD--AGRSPSLPALQAFTAAFFQAGVRLLPAQAPPPGEFHPRRNPQS--GQIQFLTTDLLAFLKPQVGTDVH---------SLVGVTMQDLYPDPSWNFVFGEATLSDRVGI 205          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A6G6JZK0_9BACT (Uncharacterized protein n=1 Tax=Roseimicrobium sp. ORNL1 TaxID=2711231 RepID=A0A6G6JZK0_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 5.610e-11
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1
Query:    1 FRRLGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVG-GKGPSVDALASMAVCFFGIPIVVPKPLAIPSRRAREG-AEGQD--QIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            F+ +   E   WL   +E  Q F++F R              N    +   + ++   D   GKGP++  L   A  FFG+P+ +   + + S  A E  + G+D  Q  T D L  + GYV +              +G+T+ DLYP +SWNFVFG A  + RVGV
Sbjct:   43 FQTIRAPEPADWLAHHQERRQTFESFLR-----------TPHNLPSSVANTIYVLPLDDFEEGKGPALADLQEFAGAFFGLPVKMLTGIPLASNSAIERRSRGEDGMQYLTTDILKVMLGYVPKNA---------FCVIGVTMEDLYPEDSWNFVFGQATYANRVGV 189          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A2V6ANH1_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6ANH1_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 6.520e-11
Identity = 61/170 (35.88%), Postives = 76/170 (44.71%), Query Frame = 1
Query:    1 FRRLGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGGK-GPSVDALASMAVCFFGIPIVVPKPLAIPS---RRAREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAA---VGITLADLYPRESWNFVFGLARASERVGV 489
            F  + E   G WL    E GQ FD F  KAS+  R      +N+ +   QPL     GD   +  PS D L   A  FFG+ + V  P+ I      R R  +    Q+ T D L  L+  +            PA A   + IT+ DLYP  SWNFVFG A   ERVGV
Sbjct:   67 FDPIPEPRPGDWLAVHNERGQTFDEF--KASQPNR----PTQNQHVIYLQPL-----GDFAPEHSPSNDKLREFAAAFFGLEMKVLPPVKIDGSTFNRRRNPSTNNPQVLTGDVLDFLKARI------------PADAFCVLAITMEDLYPEPSWNFVFGQASVRERVGV 213          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A2V5N0M1_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5N0M1_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-10
Identity = 57/159 (35.85%), Postives = 72/159 (45.28%), Query Frame = 1
Query:   34 WLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGG-KGPSVDALASMAVCFFGIPIVVPKPLAIPSRR---AREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAA---VGITLADLYPRESWNFVFGLARASERVGV 489
            WL    E GQ FD F  K SR  R      +++++   QPL     GD    + PS+D L   A  FF + +    P++I S +    R    G  QI T D L  L               LPA A   + IT+ DLYP  SWNFVFG A   +RVGV
Sbjct:   75 WLAVHDEPGQTFDEF--KTSRPNR----PTQSRRIIYLQPL-----GDFAPERSPSIDRLREFAAAFFAVEVKALPPISIQSSKFQTRRNPVTGNQQILTGDVLTFLTSR------------LPADAFCILAITMEDLYPEPSWNFVFGQASLRDRVGV 210          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A512M1X5_9BACT (Uncharacterized protein n=1 Tax=Brevifollis gellanilyticus TaxID=748831 RepID=A0A512M1X5_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 6.250e-10
Identity = 46/157 (29.30%), Postives = 69/157 (43.95%), Query Frame = 1
Query:   28 GSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGGKGPSVDALASMAVCFFGIPIVVPKPLAI---PSRRAREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            G WL +  E GQ FD +          R+     K     + LAI+  G+ G K PS++ L      FF +P  + + + +   P++        + Q+ T D LG L           ++  +  A + +T+ DLYP ESWNFVFG A      GV
Sbjct:   82 GDWLAQHDEKGQTFDAY----------RLILPRVKPRTDLRALAILPIGEFGPKAPSLEKLRRYCELFFAMPTSILRAVPVDKVPAKTRINSNTNKRQLLTTDILGWLP---------NQKPAVAYAVIAVTMEDLYPDESWNFVFGQAMLQGGAGV 219          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A3A0D3R0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0D3R0_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 9.890e-10
Identity = 56/164 (34.15%), Postives = 78/164 (47.56%), Query Frame = 1
Query:   10 LGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGGKGPSVDALASMAVCFFGIPIVVPKPLA---IPSRRAREGAE-GQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            LGE + G WL E KE GQ F  + +    + RG+   +        QPL          +   VD  A+    +F   +   +PLA   IP++  R+    G DQI T   L E+      K K+  +    AAA+ +T +DL+P E WNFVFG A  S+RVGV
Sbjct:   49 LGELQPGDWLAEHKEEGQTFRQYLKSKPVTPRGKRNVI------YIQPLGEF----TATQKKLVDETAAYLAIYFSREVKQLEPLALDVIPAKARRKHPRWGMDQILTTHVLYEVL-----KPKLPADA---AAAIALTTSDLWPGEGWNFVFGQASLSDRVGV 194          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A2V6LTJ6_9BACT (Uncharacterized protein n=5 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6LTJ6_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 2.460e-9
Identity = 59/158 (37.34%), Postives = 70/158 (44.30%), Query Frame = 1
Query:   34 WLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGD-VGGKGPSVDALASMAVCFFGIPIVVPKPLAIPSRR---AREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAA--AVGITLADLYPRESWNFVFGLARASERVGV 489
            WL    E GQ FD F  KASR  R      + + +   QPL     GD V  + PS++ L   A  FF +   V  P A  + +    R    G  QI T D L  L           K  V P A   + IT+ DLYP  SWNFVFG A   ERVGV
Sbjct:   47 WLAVHDEPGQTFDEF--KASRPNR----PTQERHVIYLQPL-----GDFVSDRSPSIEKLREFAAAFFAMETKVLPPTAPDASKFTSRRNPYTGNVQILTSDVLNFL-----------KARVPPDAFCVIAITMEDLYPDPSWNFVFGQASLRERVGV 182          
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Match: A0A2V6NLT7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6NLT7_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 9.600e-9
Identity = 57/167 (34.13%), Postives = 74/167 (44.31%), Query Frame = 1
Query:    1 FRRLGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQPLAIVGFGDVGG-KGPSVDALASMAVCFFGIPIVVPKPLAIPSRR---AREGAEGQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNFVFGLARASERVGV 489
            F ++ E   G WL    E GQ FD F  KA++  R      +N+ +   QPL     GD    K PS D L   A  FF + + V  P+ +        R       QI T D L  L      K+++  +       + IT+ DLYP  SWNFVFG A   ERVGV
Sbjct:   55 FDQIPEPRPGDWLALHNERGQTFDDF--KAAQPNR----PAQNQHVIYLQPL-----GDFAPEKSPSNDKLREFASAFFAMEVKVLPPVKVDGSTFVTRRNPFTNHPQILTGDVLDFL------KVRIPADAF---CVLAITMEDLYPEPSWNFVFGQASVRERVGV 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87230.20281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A366HUX7_9BACT2.020e-1131.45Archaemetzincin n=2 Tax=Roseimicrobium gellanilyti... [more]
UPI001CCEDA853.380e-1133.76archaemetzincin n=1 Tax=Nannocystis pusilla TaxID=... [more]
A0A847LBR0_9BACT3.630e-1134.55Uncharacterized protein n=1 Tax=Candidatus Rifleba... [more]
A0A6G6JZK0_9BACT5.610e-1130.54Uncharacterized protein n=1 Tax=Roseimicrobium sp.... [more]
A0A2V6ANH1_9BACT6.520e-1135.88Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2V5N0M1_9BACT4.290e-1035.85Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A512M1X5_9BACT6.250e-1029.30Uncharacterized protein n=1 Tax=Brevifollis gellan... [more]
A0A3A0D3R0_9BACT9.890e-1034.15Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2V6LTJ6_9BACT2.460e-937.34Uncharacterized protein n=5 Tax=Verrucomicrobia ba... [more]
A0A2V6NLT7_9BACT9.600e-934.13Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87230contigM-pyrifera_M_contig87230:346..834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue6e-08
Seed eggNOG ortholog5762.XP_002681604.1
Preferred nameAMZ2
KEGG koko:K06974
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metallopeptidase activity
EggNOG OGs2QVTZ@2759,COG1913@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.8340392-CDS-M-pyrifera_M_contig87230:345..8341622816781.8340392-CDS-M-pyrifera_M_contig87230:345..834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87230 346..834 +
1692278175.1009786-CDS-M-pyrifera_M_contig87230:345..8341692278175.1009786-CDS-M-pyrifera_M_contig87230:345..834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87230 346..834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87230.20281.1prot_M-pyrifera_M_contig87230.20281.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87230 346..834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87230.20281.1

>prot_M-pyrifera_M_contig87230.20281.1 ID=prot_M-pyrifera_M_contig87230.20281.1|Name=mRNA_M-pyrifera_M_contig87230.20281.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
FRRLGEQEEGSWLMERKESGQGFDTFARKASRSARGRVFALENKKMGIPQ
PLAIVGFGDVGGKGPSVDALASMAVCFFGIPIVVPKPLAIPSRRAREGAE
GQDQIHTQDALGELRGYVGRKLKVGKEEVLPAAAVGITLADLYPRESWNF
VFGLARASERVGV
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mRNA from alignment at M-pyrifera_M_contig87230:346..834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87230.20281.1 ID=mRNA_M-pyrifera_M_contig87230.20281.1|Name=mRNA_M-pyrifera_M_contig87230.20281.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig87230:346..834+ (Macrocystis pyrifera P11B4 male)
TTTCGGAGGCTGGGAGAGCAAGAGGAGGGGAGTTGGTTGATGGAGCGCAA GGAAAGTGGACAAGGGTTTGATACATTTGCAAGGAAGGCTTCTCGGAGTG CAAGAGGTCGGGTGTTTGCTTTGGAGAATAAGAAGATGGGAATTCCTCAA CCTTTGGCAATTGTTGGGTTTGGAGATGTGGGTGGCAAAGGTCCTTCTGT TGACGCACTTGCAAGTATGGCAGTTTGTTTCTTTGGTATTCCCATTGTCG TCCCAAAACCACTCGCGATTCCAAGTCGTCGTGCACGAGAAGGAGCAGAA GGCCAAGACCAAATTCACACACAGGATGCCCTTGGTGAATTGCGAGGGTA TGTGGGGAGGAAGTTGAAGGTGGGAAAGGAGGAGGTTTTGCCTGCAGCAG CAGTGGGGATCACTTTGGCGGATTTGTACCCTCGAGAGTCTTGGAATTTT GTGTTTGGTTTGGCACGTGCCTCTGAGAGGGTTGGTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87230:346..834+

>mRNA_M-pyrifera_M_contig87230.20281.1 ID=mRNA_M-pyrifera_M_contig87230.20281.1|Name=mRNA_M-pyrifera_M_contig87230.20281.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig87230:346..834+ (Macrocystis pyrifera P11B4 male)
TTTCGGAGGCTGGGAGAGCAAGAGGAGGGGAGTTGGTTGATGGAGCGCAA
GGAAAGTGGACAAGGGTTTGATACATTTGCAAGGAAGGCTTCTCGGAGTG
CAAGAGGTCGGGTGTTTGCTTTGGAGAATAAGAAGATGGGAATTCCTCAA
CCTTTGGCAATTGTTGGGTTTGGAGATGTGGGTGGCAAAGGTCCTTCTGT
TGACGCACTTGCAAGTATGGCAGTTTGTTTCTTTGGTATTCCCATTGTCG
TCCCAAAACCACTCGCGATTCCAAGTCGTCGTGCACGAGAAGGAGCAGAA
GGCCAAGACCAAATTCACACACAGGATGCCCTTGGTGAATTGCGAGGGTA
TGTGGGGAGGAAGTTGAAGGTGGGAAAGGAGGAGGTTTTGCCTGCAGCAG
CAGTGGGGATCACTTTGGCGGATTTGTACCCTCGAGAGTCTTGGAATTTT
GTGTTTGGTTTGGCACGTGCCTCTGAGAGGGTTGGTGTGTTTCGGAGGCT
GGGAGAGCAAGAGGAGGGGAGTTGGTTGATGGAGCGCAAGGAAAGTGGAC
AAGGGTTTGATACATTTGCAAGGAAGGCTTCTCGGAGTGCAAGAGGTCGG
GTGTTTGCTTTGGAGAATAAGAAGATGGGAATTCCTCAACCTTTGGCAAT
TGTTGGGTTTGGAGATGTGGGTGGCAAAGGTCCTTCTGTTGACGCACTTG
CAAGTATGGCAGTTTGTTTCTTTGGTATTCCCATTGTCGTCCCAAAACCA
CTCGCGATTCCAAGTCGTCGTGCACGAGAAGGAGCAGAAGGCCAAGACCA
AATTCACACACAGGATGCCCTTGGTGAATTGCGAGGGTATGTGGGGAGGA
AGTTGAAGGTGGGAAAGGAGGAGGTTTTGCCTGCAGCAGCAGTGGGGATC
ACTTTGGCGGATTTGTACCCTCGAGAGTCTTGGAATTTTGTGTTTGGTTT
GGCACGTGCCTCTGAGAGGGTTGGTGTG
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