mRNA_M-pyrifera_M_contig87228.20280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87228.20280.1
Unique NamemRNA_M-pyrifera_M_contig87228.20280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Match: A0A7V8V5J7_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V5J7_9BACT)

HSP 1 Score: 336 bits (862), Expect = 3.300e-107
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:    1 MAWAAEQKEDKKKDPPKVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEATTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRWPISYPPDRLFAFK 489
            MAWAAEQKEDKKKDPPKVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEATTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRWPISYPPDRLFAFK
Sbjct:   17 MAWAAEQKEDKKKDPPKVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEATTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRWPISYPPDRLFAFK 179
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BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Match: UPI001CC9831C (thioredoxin family protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CC9831C)

HSP 1 Score: 252 bits (643), Expect = 1.910e-75
Identity = 122/163 (74.85%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:    1 MAWAAEQKEDKKKDPPKVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEATTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRWPISYPPDRLFAFK 489
            +A+AA++    KKDPPKVSLHGEVVDA G+PVADA VT LT++P G SEATTDA+GKFTL VYE QLQYLPLLV+D+ G+RM +HKP+++NPPKPGDSVK+SLEPSR VTL+VTDA+GKPSPET VGGMAMNFIAY+A TNEQGE TLRWP+S PP+ LFA K
Sbjct:   30 IAFAADEP---KKDPPKVSLHGEVVDADGKPVADAHVTTLTHIPAGPSEATTDAEGKFTLAVYESQLQYLPLLVEDATGNRMALHKPDHQNPPKPGDSVKVSLEPSRMVTLKVTDANGKPSPETTVGGMAMNFIAYEAITNEQGEATLRWPVSSPPEELFACK 189
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BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Match: UPI001CCBDA58 (carboxypeptidase-like regulatory domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCBDA58)

HSP 1 Score: 108 bits (270), Expect = 1.370e-24
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:   49 KVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEATTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMN--FIAYDATTNEQGETTLRWPISYPPDRLFAFK 489
            KV+L+G VVDA G  V+   V    +      E TTD+ G F+ +VY   L  + LL DD  G+RM +   + + P      V I LE  RT+ + V  A G P+ E +VGG+ +N   + Y ATT++ G   LRWP+SYPP  LFAFK
Sbjct:   33 KVTLNGRVVDAAGNSVSGVVVRSEAH--RLVEETTTDSKGNFSFSVYPSHLNDVVLLADDRVGNRMAMVPAQAEEPFHANKPVAIQLEACRTLMVHVLGADGNPAAEAQVGGIDINPRRMIYMATTDQSGRAELRWPVSYPPHLLFAFK 179
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BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Match: A0A518FGM5_9PLAN (Nickel uptake substrate-specific transmembrane region n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FGM5_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 5.590e-5
Identity = 41/137 (29.93%), Postives = 61/137 (44.53%), Query Frame = 1 
Query:   52 VSLHGEVVDAIGQPVADAKVTCLTY-LPNGKSEATTDADGKFTLNVYEGQL--QYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRWP 453
            +++ G VVD   QPV DAKV    + L   + E  TD  GKF L     +   Q L +  D      +   +    +P      +K+ ++PS+ V L+V D + KP      G M  N      TT+EQG+   + P
Sbjct:   29 LTIKGTVVDQQDQPVPDAKVFVDHFRLGRDRIETRTDNQGKFALTATAARFSGQVLVVKADSLTAQHLLPWQSIAADPAL--QKLKLQVQPSKLVELEVVDQNEKPIAAAHAGIMDHNHAWGIGTTDEQGKIAFQVP 163
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BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Match: A0A813CX15_9DINO (FecI protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CX15_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 5.770e-5
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 1 
Query:   43 PPKVSLHGEVVDAIGQPVADAKVT-CLT-----------YLPNGKSEATTDADGKFTL--NVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVKISLEPSRTVTLQVTDASGKP 360
            PP   +HGEVVDA GQP A A++  C+             LP    +  TD  G+FTL   V +    Y PLL+    G  +G  + E +        ++I+L PS  + ++V D  G+P
Sbjct:  739 PPGTGVHGEVVDARGQPAAGAELLLCVDPIWTTNGQRRMQLPRAFPQGRTDGAGRFTLPNRVCDRGPTYQPLLIARGDGG-LGWAQLEVRRSRHESRDIRIALLPSARLLVRVVDERGQP 857
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87228.20280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7V8V5J7_9BACT3.300e-107100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
UPI001CC9831C1.910e-7574.85thioredoxin family protein n=1 Tax=Bremerella volc... [more]
UPI001CCBDA581.370e-2440.94carboxypeptidase-like regulatory domain-containing... [more]
A0A518FGM5_9PLAN5.590e-529.93Nickel uptake substrate-specific transmembrane reg... [more]
A0A813CX15_9DINO5.770e-532.50FecI protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87228contigM-pyrifera_M_contig87228:6..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.796018-CDS-M-pyrifera_M_contig87228:5..4941622816781.796018-CDS-M-pyrifera_M_contig87228:5..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87228 6..494 -
1692278175.0814524-CDS-M-pyrifera_M_contig87228:5..4941692278175.0814524-CDS-M-pyrifera_M_contig87228:5..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87228 6..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87228.20280.1prot_M-pyrifera_M_contig87228.20280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87228 6..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87228.20280.1

>prot_M-pyrifera_M_contig87228.20280.1 ID=prot_M-pyrifera_M_contig87228.20280.1|Name=mRNA_M-pyrifera_M_contig87228.20280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MAWAAEQKEDKKKDPPKVSLHGEVVDAIGQPVADAKVTCLTYLPNGKSEA
TTDADGKFTLNVYEGQLQYLPLLVDDSAGDRMGVHKPEYKNPPKPGDSVK
ISLEPSRTVTLQVTDASGKPSPETKVGGMAMNFIAYDATTNEQGETTLRW
PISYPPDRLFAFK
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mRNA from alignment at M-pyrifera_M_contig87228:6..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87228.20280.1 ID=mRNA_M-pyrifera_M_contig87228.20280.1|Name=mRNA_M-pyrifera_M_contig87228.20280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig87228:6..494- (Macrocystis pyrifera P11B4 male)
ATGGCTTGGGCCGCTGAGCAGAAAGAGGATAAGAAGAAAGATCCGCCGAA
GGTGTCGCTGCATGGCGAGGTGGTCGATGCAATAGGGCAACCGGTCGCAG
ATGCGAAGGTGACTTGCCTGACATATCTGCCTAATGGCAAGAGCGAAGCA
ACGACCGACGCCGATGGCAAGTTCACGCTAAACGTTTACGAAGGTCAGCT
TCAGTATCTGCCGCTGCTAGTCGATGATTCAGCTGGCGATCGGATGGGCG
TGCACAAGCCCGAGTATAAAAATCCGCCCAAACCTGGGGACTCGGTCAAG
ATTTCGCTCGAGCCCAGTCGTACCGTCACATTGCAAGTCACCGATGCCAG
CGGTAAGCCTTCACCGGAAACGAAGGTTGGGGGCATGGCGATGAACTTTA
TCGCTTACGATGCCACGACCAACGAGCAGGGTGAAACAACGCTGCGGTGG
CCGATTAGTTATCCGCCGGATAGACTTTTCGCGTTTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87228:6..494-

>mRNA_M-pyrifera_M_contig87228.20280.1 ID=mRNA_M-pyrifera_M_contig87228.20280.1|Name=mRNA_M-pyrifera_M_contig87228.20280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig87228:6..494- (Macrocystis pyrifera P11B4 male)
ATGGCTTGGGCCGCTGAGCAGAAAGAGGATAAGAAGAAAGATCCGCCGAA
GGTGTCGCTGCATGGCGAGGTGGTCGATGCAATAGGGCAACCGGTCGCAG
ATGCGAAGGTGACTTGCCTGACATATCTGCCTAATGGCAAGAGCGAAGCA
ACGACCGACGCCGATGGCAAGTTCACGCTAAACGTTTACGAAGGTCAGCT
TCAGTATCTGCCGCTGCTAGTCGATGATTCAGCTGGCGATCGGATGGGCG
TGCACAAGCCCGAGTATAAAAATCCGCCCAAACCTGGGGACTCGGTCAAG
ATTTCGCTCGAGCCCAGTCGTACCGTCACATTGCAAGTCACCGATGCCAG
CGGTAAGCCTTCACCGGAAACGAAGGTTGGGGGCATGGCGATGAACTTTA
TCGCTTACGATGCCACGACCAACGAGCAGGGTGAAACAACGCTGCGGTGG
CCGATTAGTTATCCGCCGGATAGACTTTTCGCGTTTAAGATGGCTTGGGC
CGCTGAGCAGAAAGAGGATAAGAAGAAAGATCCGCCGAAGGTGTCGCTGC
ATGGCGAGGTGGTCGATGCAATAGGGCAACCGGTCGCAGATGCGAAGGTG
ACTTGCCTGACATATCTGCCTAATGGCAAGAGCGAAGCAACGACCGACGC
CGATGGCAAGTTCACGCTAAACGTTTACGAAGGTCAGCTTCAGTATCTGC
CGCTGCTAGTCGATGATTCAGCTGGCGATCGGATGGGCGTGCACAAGCCC
GAGTATAAAAATCCGCCCAAACCTGGGGACTCGGTCAAGATTTCGCTCGA
GCCCAGTCGTACCGTCACATTGCAAGTCACCGATGCCAGCGGTAAGCCTT
CACCGGAAACGAAGGTTGGGGGCATGGCGATGAACTTTATCGCTTACGAT
GCCACGACCAACGAGCAGGGTGAAACAACGCTGCGGTGGCCGATTAGTTA
TCCGCCGGATAGACTTTTCGCGTTTAAG
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