mRNA_M-pyrifera_M_contig87183.20274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87183.20274.1
Unique NamemRNA_M-pyrifera_M_contig87183.20274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87183.20274.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.850e-19
Identity = 54/181 (29.83%), Postives = 93/181 (51.38%), Query Frame = 1 
Query:   76 FSMWRSKFLAYLPSLGCLHVLSSTANPVMVGDMRVSPEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQKAMSPSGAWKELEDYYMPKTIAATHRLRREFDTIRMAEDENPLLFLGRVDKAADELAMLGCGKSAEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEIIRDAYA 618
            F  WR +FLAY+ +    H +  +A   +V         L  ++  Q + + +  +  ++EA  G    E  +    S +GAW+ +ED+Y+P   A    L  E D I M++DE+P LF  RV +   +L  +G  KS +EV R +V  L + Y ++ ++ LS   + R+E+ +++R  YA
Sbjct:  112 FLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQ--DEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPF-ENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRDLTRAELQDVVRGRYA 289
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BLAST of mRNA_M-pyrifera_M_contig87183.20274.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-7
Identity = 45/180 (25.00%), Postives = 83/180 (46.11%), Query Frame = 1 
Query:   82 MWRSKFLAYLPSLGCLHVLSSTANPVMVGDMRVSPEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQKAMSPSGAWKELEDYYMPKTIAATHRLRREFDTIRMAEDENPLLFLGRVDKAADELAMLGCGKSAEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEIIRDAYAN 621
            +++S  +A     G   V+ S  + + VG    +  +L ++     +  A   + L++ +++ Y      +    SPSG W     YY P+  A   RL +E+ +  M   E P  + GR       LA  G      E N H+V+ LSS YT++ + + +   +   +I++ ++DAYA+
Sbjct:  156 IFKSSMVARFAQEGVHEVVMSDED-IPVGKHGANMAQLRTQFDALRVAKAIAAWNLLISSIS-YMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHSFYMKSGEIPQEYFGRFYILRSRLASHGTIYPDNEANDHLVSALSSDYTLERRMLHNMADLTLQKIEQSVKDAYAD 333
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BLAST of mRNA_M-pyrifera_M_contig87183.20274.1 vs. uniprot
Match: A0A8J5Z0A9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z0A9_9ROSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.480e-5
Identity = 41/201 (20.40%), Postives = 82/201 (40.80%), Query Frame = 1 
Query:   34 SQSRPPTFDNVGAHFSMWRSKFLAYLPSLGCLHVLSSTANPVMVGDMRVSPEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQKAMSPSGAWKELEDYYMPKTIAATHRL---RREFDTIRMAEDENPLLFLGRVDKAADELAMLGCGKSAEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEIIRDAYANDK 627
            S + PP F+  G H  +W  K   YL +     V+++ A P     +  +P    +R    E          +   ++  D+   R+    +P  AW +L++ +         +L   RREF+ ++M E+E    +  R+    + + +LG   S   +   ++  L   Y ++  S+     +    + E+I   YA ++
Sbjct:    7 SPAAPPVFNGEGFH--IWVVKIRTYLQAFDMWEVVNTDAEPA---PLTANPTVAQTRQHANEKTKRHKAMSCIQNCVS--DVIFTRIMACETPKQAWDKLKEEFQGTERTRQQQLLNLRREFENLKMKEEETVKQYSDRIMAVVNSIRLLGEQFSEARIVEKVLLTLPERYEVKISSLEDSRDLATISLTELINTLYAQEQ 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87183.20274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LA89_9PHAE5.850e-1929.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR49_9PHAE1.150e-725.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5Z0A9_9ROSI2.480e-520.40Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87183contigM-pyrifera_M_contig87183:194..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.5294583-CDS-M-pyrifera_M_contig87183:193..8201622816781.5294583-CDS-M-pyrifera_M_contig87183:193..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87183 194..820 +
1692278174.9144688-CDS-M-pyrifera_M_contig87183:193..8201692278174.9144688-CDS-M-pyrifera_M_contig87183:193..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87183 194..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87183.20274.1prot_M-pyrifera_M_contig87183.20274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87183 194..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87183.20274.1

>prot_M-pyrifera_M_contig87183.20274.1 ID=prot_M-pyrifera_M_contig87183.20274.1|Name=mRNA_M-pyrifera_M_contig87183.20274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
MSLPSLYRPSLSQSRPPTFDNVGAHFSMWRSKFLAYLPSLGCLHVLSSTA
NPVMVGDMRVSPEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQK
AMSPSGAWKELEDYYMPKTIAATHRLRREFDTIRMAEDENPLLFLGRVDK
AADELAMLGCGKSAEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEI
IRDAYANDK
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mRNA from alignment at M-pyrifera_M_contig87183:194..820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87183.20274.1 ID=mRNA_M-pyrifera_M_contig87183.20274.1|Name=mRNA_M-pyrifera_M_contig87183.20274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig87183:194..820+ (Macrocystis pyrifera P11B4 male)
ATGTCATTACCTTCTTTGTACCGCCCAAGTTTGTCCCAGTCGAGACCCCC
GACGTTCGATAATGTAGGGGCCCACTTTAGCATGTGGCGTAGTAAGTTTT
TGGCATACCTACCATCGCTTGGGTGCTTGCATGTACTCAGTAGCACAGCA
AACCCAGTTATGGTAGGTGACATGAGGGTTTCGCCGGAGGAATTAGCCTC
CAGACATTCCCCCCAGGAGATTAGGGATGCGCGATTGGTGTATGGATTGA
TGATGGAGGCCATGACAGGATACGATATGGCTGAGTTTAGAATGCAAAAG
GCAATGTCTCCGAGTGGTGCTTGGAAGGAGTTGGAAGACTATTACATGCC
GAAGACGATAGCAGCAACACACAGATTGAGGAGGGAGTTTGATACCATCC
GAATGGCTGAGGATGAAAACCCCTTGCTGTTCCTCGGAAGGGTGGACAAG
GCAGCAGACGAGCTGGCGATGTTAGGATGTGGCAAGAGTGCAGAGGAAGT
AAACCGACACATTGTTACCAACCTCTCATCTTTGTATACTATTCAAAGCA
AGTCCATTCTTTCCCGCCCTTCCATCCCCCGTTCCGAGATCGATGAGATC
ATCCGTGACGCGTATGCTAACGACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87183:194..820+

>mRNA_M-pyrifera_M_contig87183.20274.1 ID=mRNA_M-pyrifera_M_contig87183.20274.1|Name=mRNA_M-pyrifera_M_contig87183.20274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig87183:194..820+ (Macrocystis pyrifera P11B4 male)
ATGTCATTACCTTCTTTGTACCGCCCAAGTTTGTCCCAGTCGAGACCCCC
GACGTTCGATAATGTAGGGGCCCACTTTAGCATGTGGCGTAGTAAGTTTT
TGGCATACCTACCATCGCTTGGGTGCTTGCATGTACTCAGTAGCACAGCA
AACCCAGTTATGGTAGGTGACATGAGGGTTTCGCCGGAGGAATTAGCCTC
CAGACATTCCCCCCAGGAGATTAGGGATGCGCGATTGGTGTATGGATTGA
TGATGGAGGCCATGACAGGATACGATATGGCTGAGTTTAGAATGCAAAAG
GCAATGTCTCCGAGTGGTGCTTGGAAGGAGTTGGAAGACTATTACATGCC
GAAGACGATAGCAGCAACACACAGATTGAGGAGGGAGTTTGATACCATCC
GAATGGCTGAGGATGAAAACCCCTTGCTGTTCCTCGGAAGGGTGGACAAG
GCAGCAGACGAGCTGGCGATGTTAGGATGTGGCAAGAGTGCAGAGGAAGT
AAACCGACACATTGTTACCAACCTCTCATCTTTGTATACTATTCAAAGCA
AGTCCATTCTTTCCCGCCCTTCCATCCCCCGTTCCGAGATCGATGAGATC
ATCCGTGACGCGTATGCTAACGACAAGATGTCATTACCTTCTTTGTACCG
CCCAAGTTTGTCCCAGTCGAGACCCCCGACGTTCGATAATGTAGGGGCCC
ACTTTAGCATGTGGCGTAGTAAGTTTTTGGCATACCTACCATCGCTTGGG
TGCTTGCATGTACTCAGTAGCACAGCAAACCCAGTTATGGTAGGTGACAT
GAGGGTTTCGCCGGAGGAATTAGCCTCCAGACATTCCCCCCAGGAGATTA
GGGATGCGCGATTGGTGTATGGATTGATGATGGAGGCCATGACAGGATAC
GATATGGCTGAGTTTAGAATGCAAAAGGCAATGTCTCCGAGTGGTGCTTG
GAAGGAGTTGGAAGACTATTACATGCCGAAGACGATAGCAGCAACACACA
GATTGAGGAGGGAGTTTGATACCATCCGAATGGCTGAGGATGAAAACCCC
TTGCTGTTCCTCGGAAGGGTGGACAAGGCAGCAGACGAGCTGGCGATGTT
AGGATGTGGCAAGAGTGCAGAGGAAGTAAACCGACACATTGTTACCAACC
TCTCATCTTTGTATACTATTCAAAGCAAGTCCATTCTTTCCCGCCCTTCC
ATCCCCCGTTCCGAGATCGATGAGATCATCCGTGACGCGTATGCTAACGA
CAAG
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