mRNA_M-pyrifera_M_contig87180.20273.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87180.20273.1
Unique NamemRNA_M-pyrifera_M_contig87180.20273.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A2E7KB48_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KB48_9PLAN)

HSP 1 Score: 545 bits (1403), Expect = 4.920e-189
Identity = 274/278 (98.56%), Postives = 275/278 (98.92%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAAAIEVIAQQFPGQKVTLGGNALDPV YLKSLLPQQNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIA DQQH YINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNG+SLLVLTNN
Sbjct:  238 AAAAIEVIAQQFPGQKVTLGGNALDPVPYLKSLLPQQNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAVDQQHVYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGDSLLVLTNN 515          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A517Q4Y1_9PLAN (Outer membrane biogenesis protein BamB n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q4Y1_9PLAN)

HSP 1 Score: 423 bits (1088), Expect = 1.520e-141
Identity = 203/278 (73.02%), Postives = 240/278 (86.33%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAA IEVI+QQF GQKVTLGG ++DPV YLKSLLP++   S ++  +     ++++  LPDS ++P WQ+HFLD++VEQALQNSQ+DYYGR KSYATYVPP+A DQQHAY NYYGVCFG+DL++GKLLWR+AKFKDLGNHFNNYSFHQSSHLNQYH+AVSG+YVL TLIPQKEMNRYRACYRL AY K TGKQ+WQ+  NNES+ICEPLV GEQIY ISH QN+KQL L CLSLKTGK+EW IPLGSVVAG+S+NGM +MPSP+L+  G+ LL+LTNN
Sbjct:  238 AAATIEVISQQFSGQKVTLGGKSVDPVPYLKSLLPEKLTVSSSTKHNQGANHLTRALDLPDSKTEPRWQIHFLDKAVEQALQNSQNDYYGRRKSYATYVPPMAVDQQHAYFNYYGVCFGVDLQTGKLLWRSAKFKDLGNHFNNYSFHQSSHLNQYHVAVSGNYVLTTLIPQKEMNRYRACYRLTAYHKDTGKQLWQSKVNNESFICEPLVDGEQIYVISHMQNNKQLKLDCLSLKTGKREWSIPLGSVVAGNSSNGMVNMPSPLLQKEGDQLLILTNN 515          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A2E2C3C1_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C3C1_9PLAN)

HSP 1 Score: 371 bits (953), Expect = 4.160e-121
Identity = 180/280 (64.29%), Postives = 227/280 (81.07%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKS--VSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AA+ I++I+QQ+  QKVTLGG ++DPV YLK+LLP  +  + + + ++   S  +SQ  +L     QP WQ+ FLDQ+ EQA+ NSQSDYYGRSKSY T+VPP+A D Q AY N+YG+CFG+DL+SGKL+WRNAKFKDLG +FNNYSFHQSS+LNQYHI V GDYVL TLIPQKEMNRYRACYRL+AYQ+ +GKQ+WQ++  NES+I  PL+ G+Q+Y ISHQQN+K L L+CL LKTGKK+W IPLGSVVAG+S+NGM  MP P+L+  G+SLL+LTNN
Sbjct:  240 AASTIQLISQQYADQKVTLGGESVDPVVYLKALLPADSEKNSSHTLASTVLSNRLSQPLELTGKTLQPRWQVTFLDQTAEQAIANSQSDYYGRSKSYQTFVPPMAVDDQRAYFNFYGICFGVDLQSGKLVWRNAKFKDLGTNFNNYSFHQSSNLNQYHITVDGDYVLTTLIPQKEMNRYRACYRLIAYQRDSGKQLWQSNQTNESFISRPLIDGDQVYVISHQQNNKLLTLNCLQLKTGKKQWSIPLGSVVAGNSSNGMPIMPIPILRKTGDSLLILTNN 519          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A517XBT3_9PLAN (Outer membrane protein assembly factor BamB n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XBT3_9PLAN)

HSP 1 Score: 370 bits (951), Expect = 6.710e-121
Identity = 182/280 (65.00%), Postives = 225/280 (80.36%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKS--VSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAA I++I+QQ+  QKVTLGG+A+DPV YLKSL+P  +  S   S +    S  +SQ  Q+ D    P WQ+ +LDQ+ EQA+ NSQSDYYGRSKSY T+VPP+A D + AY N+YG+CFG+DL++GKL+WRNAKFKDLG +FNNYSFHQSS+LNQYHI V G+YVL TLIPQKEMNRYRACYRL+AY + +GKQ+WQ+S  NES+I +PLV GEQIY ISHQQN+K L L+CL LKTGKK+W IPLGSVVAG+++NGM  MP P+L+  G SLL+LTNN
Sbjct:  240 AAATIQLISQQYSDQKVTLGGDAVDPVMYLKSLMPADSEKSDNHSVATTALSNRISQPLQMSDKQIAPRWQVTYLDQAAEQAIVNSQSDYYGRSKSYQTFVPPMAVDDKRAYFNFYGICFGVDLQTGKLVWRNAKFKDLGTNFNNYSFHQSSNLNQYHITVDGNYVLTTLIPQKEMNRYRACYRLIAYHRDSGKQLWQSSQTNESFISKPLVAGEQIYVISHQQNNKLLTLNCLQLKTGKKQWSIPLGSVVAGNTSNGMPVMPVPILRKTGGSLLILTNN 519          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A517V7T8_9PLAN (Outer membrane protein assembly factor BamB n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V7T8_9PLAN)

HSP 1 Score: 358 bits (919), Expect = 4.590e-116
Identity = 177/280 (63.21%), Postives = 222/280 (79.29%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKS--VSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAA I++IAQQ+  QKVTLGG ++DPV YLKSLLP  +  S+++S +    S  +S+  ++     QP WQ+ +LDQ+ EQA+ NSQSDYYGR KSY T+VPP+A D + AY N+YG+CFG+DL++GKL+WRN+KFKDLG +FNNYSFHQSS+L QYHI V GDYVLATLIPQKEMNRYRA YRL+AY + +GKQ+W  S   ES+I +PLV GE IY ISH+QN+K L L+CL LKTGKKEW IPLGSVVAG+S+NGM  MP P+L+  G+SLL+LTNN
Sbjct:  241 AAATIQLIAQQYSDQKVTLGGASVDPVLYLKSLLPADSEKSISNSLATTVLSNRISKPLKMSAKQIQPRWQVTYLDQTAEQAIVNSQSDYYGRGKSYQTFVPPMAVDDKRAYFNFYGICFGVDLQTGKLVWRNSKFKDLGTNFNNYSFHQSSNLKQYHITVDGDYVLATLIPQKEMNRYRAAYRLIAYHRDSGKQLWMYSLATESFISKPLVDGEHIYVISHKQNNKLLTLNCLQLKTGKKEWSIPLGSVVAGNSSNGMTIMPIPILRKTGDSLLILTNN 520          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A517VX55_9PLAN (Outer membrane biogenesis protein BamB n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VX55_9PLAN)

HSP 1 Score: 340 bits (873), Expect = 3.410e-109
Identity = 169/276 (61.23%), Postives = 218/276 (78.99%), Query Frame = 1
Query:   13 IEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPK--SVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            I++IAQQFP +K+ +GG ++DPV+YL+SL+ +  V S  S +  D    S+ Q  +L  + ++P W+L FLD+SV QA+ NSQS+YYGR KSY T+VPP+A D + AY N+YGVCFG+DL+SGKL+WRN+KF+ LG HFNNYSFHQSS L QYHI+VSGDYVLAT+IPQKEMN YRA YRL+AY KKTGK+ W ++  NES+I +PLV G+ IY ISH QN+K L L+ LSLKTGKKEW IPLG+VVAG+S++G+  MP P L+  G++LLVLTNN
Sbjct:  244 IQLIAQQFPDKKIMMGGQSIDPVSYLQSLITEMPVKSRNSVEQPDTSFASLKQPLKLQQTKNKPKWKLSFLDKSVVQAIANSQSNYYGRGKSYITFVPPMAVDSKRAYFNFYGVCFGVDLQSGKLVWRNSKFQTLGTHFNNYSFHQSSSLQQYHISVSGDYVLATMIPQKEMNHYRARYRLMAYHKKTGKEFWTSNIGNESFISKPLVDGDHIYIISHTQNNKLLTLNSLSLKTGKKEWSIPLGTVVAGNSSHGVPLMPVPYLQKQGDNLLVLTNN 519          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A517RG32_9PLAN (Outer membrane biogenesis protein BamB n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RG32_9PLAN)

HSP 1 Score: 318 bits (814), Expect = 2.190e-100
Identity = 156/280 (55.71%), Postives = 210/280 (75.00%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQ--QNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAA I+VI+QQFPG+K+ LGG  +DPV YL++L P+  +  S+ A         + Q  +LP    +P WQL +LD+++ QA++NS+ +YYGR KSY T+VPP+A D++ AY N+YGVCFG+DL++GKL+WR  KF+DLG HF+NYSFHQSS+  QY I V+ D VLATLIP+KEMN YRA YRL AY   TGKQ+W ++ +NESY+ +PLV G  +Y +SH QN+K L L+CLSLKTGKKEW + LG+ V+ S++NG E MP P+L+  G++LLVLTNN
Sbjct:  241 AAATIQVISQQFPGKKIRLGGEDVDPVPYLQALTPRGAETPSAAAPQHHQLANLLQQPLKLPQEKVKPQWQLSYLDKTMVQAIENSRRNYYGRGKSYETFVPPMAVDEKRAYFNFYGVCFGVDLQTGKLVWRTDKFQDLGTHFSNYSFHQSSNPAQYQITVANDIVLATLIPKKEMNHYRARYRLYAYNGATGKQLWTSNVSNESYLSKPLVEGGHVYVVSHLQNNKSLTLNCLSLKTGKKEWSLKLGAAVSTSNSNGREKMPIPLLQKEGDNLLVLTNN 520          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A518ID21_9PLAN (Outer membrane biogenesis protein BamB n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518ID21_9PLAN)

HSP 1 Score: 310 bits (793), Expect = 2.950e-97
Identity = 152/280 (54.29%), Postives = 210/280 (75.00%), Query Frame = 1
Query:    1 AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQ--QNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGESLLVLTNN 834
            AAA I+VIAQQFP +K+ LGG+ ++PV YL++L+PQ     S     ++     + Q   L   + +P WQL +LDQ++ QA++NS+ +YYGR KSY T+VPP+A D++ AY N+YGVCF +DL++GKL+WR  KF+DLG HF+NYSFHQSS+  QY I+V+ D VLATLIP+KEMN YRA YRL A+   TGKQ+W ++ +NES++ +PLV G+ +Y +SH QN+K L L+CLSLKTGKKEW + LG+ V+ S+ NGM+ MP P+L+  G++LLVLTNN
Sbjct:  242 AAANIQVIAQQFPDEKIKLGGDDVNPVPYLQALIPQGAATQSPATPQQNRIANLLRQPLDLAPENVKPEWQLSYLDQAMVQAIENSRRNYYGRGKSYETFVPPMAVDEKRAYFNFYGVCFCVDLQTGKLVWRTDKFQDLGTHFSNYSFHQSSNPAQYQISVTNDIVLATLIPKKEMNHYRARYRLYAFNGATGKQLWTSNVSNESFLSKPLVEGDHVYVVSHLQNNKSLTLNCLSLKTGKKEWSLKLGAAVSTSNVNGMQKMPIPLLQKEGDNLLVLTNN 521          
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Match: A0A6J4NQ64_9BACT (Uncharacterized protein n=1 Tax=uncultured Phycisphaerae bacterium TaxID=904963 RepID=A0A6J4NQ64_9BACT)

HSP 1 Score: 120 bits (302), Expect = 3.500e-27
Identity = 88/282 (31.21%), Postives = 144/282 (51.06%), Query Frame = 1
Query:   13 IEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDPKSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDY-YGR-SKSYATYVPPIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSSHLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSANNE-----SYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVAGSSTNGMEDMPSPVLKLNGE-SLLVLTNN 834
            + V+  +F G++VT+GG  +    +L+SL      ++ A+     P  V+    LP  D+ P WQ+  +D  ++  L+ + +D  +GR      T+VPP   D    Y N+ G+ F  D+K+GKLLWRN  F  LG+ F  Y  +Q   L+ Y +A++G+ +L T +    +  Y+    LV+     GK  W  S+NN      S++ +P+V G+ IY  + ++    L L  +    G   W + LG+  AG    G   +P+PVL  +G  ++ VLTNN
Sbjct:  260 LRVVRTEFAGERVTIGGKEVVATEFLESLRTATPTTNPAAGTEGAPGPVA----LPRDDT-PAWQIKLMDGPLQAKLEAALNDNGWGRFMNGLGTFVPPADTDGGRVYANWLGIVFAADVKTGKLLWRNRDFGQLGDKFQ-YFVNQMIDLDCYTLALAGERLLVTGVNLGRLQNYQEPVVLVSMNAADGKVNW--SSNNGGLSGFSFVGKPVVAGDVIYAAARKRQGTALTLLAIGPAKGDLLWQLELGTAQAGQDYQGEPAVPNPVLVPHGTGAVYVLTNN 533          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87180.20273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7KB48_9PLAN4.920e-18998.56Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517Q4Y1_9PLAN1.520e-14173.02Outer membrane biogenesis protein BamB n=2 Tax=Gim... [more]
A0A2E2C3C1_9PLAN4.160e-12164.29Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A517XBT3_9PLAN6.710e-12165.00Outer membrane protein assembly factor BamB n=7 Ta... [more]
A0A517V7T8_9PLAN4.590e-11663.21Outer membrane protein assembly factor BamB n=1 Ta... [more]
A0A517VX55_9PLAN3.410e-10961.23Outer membrane biogenesis protein BamB n=2 Tax=Gim... [more]
A0A517RG32_9PLAN2.190e-10055.71Outer membrane biogenesis protein BamB n=1 Tax=Gim... [more]
A0A518ID21_9PLAN2.950e-9754.29Outer membrane biogenesis protein BamB n=1 Tax=Gim... [more]
A0A6J4NQ64_9BACT3.500e-2731.21Uncharacterized protein n=1 Tax=uncultured Phycisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87180contigM-pyrifera_M_contig87180:3..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score371.3
Seed ortholog evalue3.9e-100
Seed eggNOG ortholog344747.PM8797T_29962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PQQ-like domain
EggNOG OGs2IXVG@203682,COG1520@1,COG1520@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.4956942-CDS-M-pyrifera_M_contig87180:2..8361622816781.4956942-CDS-M-pyrifera_M_contig87180:2..836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87180 3..836 +
1692278174.9016087-CDS-M-pyrifera_M_contig87180:2..8361692278174.9016087-CDS-M-pyrifera_M_contig87180:2..836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87180 3..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87180.20273.1prot_M-pyrifera_M_contig87180.20273.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87180 3..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87180.20273.1

>prot_M-pyrifera_M_contig87180.20273.1 ID=prot_M-pyrifera_M_contig87180.20273.1|Name=mRNA_M-pyrifera_M_contig87180.20273.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=278bp
AAAAIEVIAQQFPGQKVTLGGNALDPVAYLKSLLPQQNVSSVASSKSNDP
KSVSQSFQLPDSDSQPHWQLHFLDQSVEQALQNSQSDYYGRSKSYATYVP
PIAFDQQHAYINYYGVCFGLDLKSGKLLWRNAKFKDLGNHFNNYSFHQSS
HLNQYHIAVSGDYVLATLIPQKEMNRYRACYRLVAYQKKTGKQVWQTSAN
NESYICEPLVVGEQIYTISHQQNSKQLNLSCLSLKTGKKEWGIPLGSVVA
GSSTNGMEDMPSPVLKLNGESLLVLTNN
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mRNA from alignment at M-pyrifera_M_contig87180:3..836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87180.20273.1 ID=mRNA_M-pyrifera_M_contig87180.20273.1|Name=mRNA_M-pyrifera_M_contig87180.20273.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig87180:3..836+ (Macrocystis pyrifera P11B4 male)
GCTGCTGCAGCAATCGAGGTGATCGCTCAACAGTTTCCTGGTCAGAAAGT GACACTGGGAGGCAATGCCCTTGATCCGGTAGCTTATCTGAAGTCTTTAC TGCCGCAGCAGAACGTGTCTTCTGTTGCTTCTTCGAAATCCAATGACCCA AAGTCGGTCTCTCAGTCATTCCAGTTACCCGATTCTGATTCTCAACCGCA CTGGCAGTTGCATTTTCTGGATCAGAGTGTGGAACAGGCGCTGCAGAATT CTCAATCAGATTATTACGGCCGCAGCAAATCGTATGCAACCTACGTTCCT CCCATAGCCTTTGATCAGCAGCATGCCTATATAAACTACTATGGTGTCTG TTTTGGTCTCGATTTGAAGTCCGGGAAGCTGCTCTGGAGGAACGCTAAGT TCAAGGATCTGGGAAATCATTTCAACAACTATAGTTTTCATCAGTCCAGC CATCTGAATCAGTATCATATTGCCGTGAGTGGAGATTATGTACTCGCTAC TCTGATCCCTCAGAAGGAAATGAACCGTTACCGTGCCTGTTATCGGCTGG TTGCCTATCAGAAAAAGACGGGCAAACAAGTCTGGCAAACCAGTGCGAAT AACGAAAGCTATATCTGTGAGCCTCTGGTGGTTGGAGAGCAGATTTACAC AATCTCTCACCAGCAAAACAGTAAACAACTCAATTTGAGTTGCCTGTCGT TGAAGACGGGAAAGAAGGAGTGGGGGATTCCCCTGGGATCTGTCGTGGCA GGCAGCTCTACAAACGGGATGGAAGACATGCCCTCTCCCGTGCTCAAACT GAATGGAGAGTCACTTCTGGTACTCACCAATAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87180:3..836+

>mRNA_M-pyrifera_M_contig87180.20273.1 ID=mRNA_M-pyrifera_M_contig87180.20273.1|Name=mRNA_M-pyrifera_M_contig87180.20273.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig87180:3..836+ (Macrocystis pyrifera P11B4 male)
GCTGCTGCAGCAATCGAGGTGATCGCTCAACAGTTTCCTGGTCAGAAAGT
GACACTGGGAGGCAATGCCCTTGATCCGGTAGCTTATCTGAAGTCTTTAC
TGCCGCAGCAGAACGTGTCTTCTGTTGCTTCTTCGAAATCCAATGACCCA
AAGTCGGTCTCTCAGTCATTCCAGTTACCCGATTCTGATTCTCAACCGCA
CTGGCAGTTGCATTTTCTGGATCAGAGTGTGGAACAGGCGCTGCAGAATT
CTCAATCAGATTATTACGGCCGCAGCAAATCGTATGCAACCTACGTTCCT
CCCATAGCCTTTGATCAGCAGCATGCCTATATAAACTACTATGGTGTCTG
TTTTGGTCTCGATTTGAAGTCCGGGAAGCTGCTCTGGAGGAACGCTAAGT
TCAAGGATCTGGGAAATCATTTCAACAACTATAGTTTTCATCAGTCCAGC
CATCTGAATCAGTATCATATTGCCGTGAGTGGAGATTATGTACTCGCTAC
TCTGATCCCTCAGAAGGAAATGAACCGTTACCGTGCCTGTTATCGGCTGG
TTGCCTATCAGAAAAAGACGGGCAAACAAGTCTGGCAAACCAGTGCGAAT
AACGAAAGCTATATCTGTGAGCCTCTGGTGGTTGGAGAGCAGATTTACAC
AATCTCTCACCAGCAAAACAGTAAACAACTCAATTTGAGTTGCCTGTCGT
TGAAGACGGGAAAGAAGGAGTGGGGGATTCCCCTGGGATCTGTCGTGGCA
GGCAGCTCTACAAACGGGATGGAAGACATGCCCTCTCCCGTGCTCAAACT
GAATGGAGAGTCACTTCTGGTACTCACCAATAATGCTGCTGCAGCAATCG
AGGTGATCGCTCAACAGTTTCCTGGTCAGAAAGTGACACTGGGAGGCAAT
GCCCTTGATCCGGTAGCTTATCTGAAGTCTTTACTGCCGCAGCAGAACGT
GTCTTCTGTTGCTTCTTCGAAATCCAATGACCCAAAGTCGGTCTCTCAGT
CATTCCAGTTACCCGATTCTGATTCTCAACCGCACTGGCAGTTGCATTTT
CTGGATCAGAGTGTGGAACAGGCGCTGCAGAATTCTCAATCAGATTATTA
CGGCCGCAGCAAATCGTATGCAACCTACGTTCCTCCCATAGCCTTTGATC
AGCAGCATGCCTATATAAACTACTATGGTGTCTGTTTTGGTCTCGATTTG
AAGTCCGGGAAGCTGCTCTGGAGGAACGCTAAGTTCAAGGATCTGGGAAA
TCATTTCAACAACTATAGTTTTCATCAGTCCAGCCATCTGAATCAGTATC
ATATTGCCGTGAGTGGAGATTATGTACTCGCTACTCTGATCCCTCAGAAG
GAAATGAACCGTTACCGTGCCTGTTATCGGCTGGTTGCCTATCAGAAAAA
GACGGGCAAACAAGTCTGGCAAACCAGTGCGAATAACGAAAGCTATATCT
GTGAGCCTCTGGTGGTTGGAGAGCAGATTTACACAATCTCTCACCAGCAA
AACAGTAAACAACTCAATTTGAGTTGCCTGTCGTTGAAGACGGGAAAGAA
GGAGTGGGGGATTCCCCTGGGATCTGTCGTGGCAGGCAGCTCTACAAACG
GGATGGAAGACATGCCCTCTCCCGTGCTCAAACTGAATGGAGAGTCACTT
CTGGTACTCACCAATAAT
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