mRNA_M-pyrifera_M_contig8715.20264.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8715.20264.1
Unique NamemRNA_M-pyrifera_M_contig8715.20264.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 5.670e-138
Identity = 226/320 (70.62%), Postives = 257/320 (80.31%), Query Frame = 1
Query:    1 MTSRVSLLVAALASGICSVGQAFVTLNAIASPGGGFSP----RAARHRRRAHH--------------MSTSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLL-SMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMP--DEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDESGGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEVGM 897
            M +R ++L  AL++ +CSVG++FVT N    PGG FS     +AAR RR A                MSTSTDLK+LGLTPELERLTKVFRSCP +KMRQMQLLHL QMGDK+DP+L TEENKVLGCLSTVYVAAEVKD GL+Y+ TDSDAMITKG A LL +MGLSGN+PE+IQTVKPEFI+VAGL ASL AGRNNGFINMLRTMK KAL+LGGE A+RAAMEQ  P  +    EE +E GTMA+R+ +KLQ+LEPLKL I+DESGGEESKFMI IVSK+FEGL LLKRHRSVYG++ADEMKIVHAVTL T TPEE GM
Sbjct:    1 MVARAAILSVALSTSVCSVGESFVTPNVAVVPGGAFSSHRAAQAARSRRPAAXXXXXXRSGRDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKD-GLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.650e-67
Identity = 138/270 (51.11%), Postives = 168/270 (62.22%), Query Frame = 1
Query:  118 AARHRRRAHHMSTSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDEVEQEEKQEGGTMAAR----------IADKLQQLEPLKLEIQDESGGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEVGM 897
            +AR R     MST+  ++ELGLT ELERL K FRS P++KMR  QLL +A  G +L     T +NKV GCLSTV+V A++K  G VYF+ DSDA +TKGL  +L  GLSGN    IQ+VKPEFI+VAGL  SLT GRNNGFINML TMK KAL                          EG  M             I  KLQ L P++L+++DES  +E KF I++VS AFEGL L+KRH+ V+  IADEMK VHAV LST TP E+G+
Sbjct:   51 SARRRAAPLLMSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQ-GKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGKPMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A7S1T9Y1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9Y1_9RHOD)

HSP 1 Score: 185 bits (470), Expect = 1.240e-51
Identity = 120/254 (47.24%), Postives = 149/254 (58.66%), Query Frame = 1
Query:  163 DLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPA--LRAAMEQVMPDEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDES-----------GGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKI-VHAVTLSTNTP 882
            +L  LGLTPELERLT+ F   P+ KMR  QLL +AQ    +D SLMT ENKV GCLSTVYV A    DG V+   DSDA +TKGL  LL  GL G T E I+ V PEFI+ +GL  SLT GRNNGF+NML  +KAKA +    P   L A  + V    VE+    + G +  RIA KL  L+P +L I D+S              E+ F I I S AFE L  ++RHR +Y ++A E+   VHA+ +   TP
Sbjct:   46 ELDALGLTPELERLTRQFSMVPDPKMRYQQLLFMAQELPSMDTSLMTSENKVPGCLSTVYVHASRNGDGTVHLVGDSDAQLTKGLIALLIQGLDGKTVEEIERVSPEFIQASGLAVSLTPGRNNGFLNMLAKIKAKARACIDSPVEVLSATPDPV----VERNIPPDAGPIYRRIAQKLSVLKPTELVISDKSKQHSGHPGNLQAKTETHFSIRIRSTAFEPLTPVQRHRVIYTLLAQELNDGVHALQIDAQTP 295          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 186 bits (472), Expect = 1.440e-51
Identity = 121/295 (41.02%), Postives = 163/295 (55.25%), Query Frame = 1
Query:  103 GFSPRAARHRRRAHHMSTST---------DLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSL----------GGEPALRAAMEQVMPDEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDES------------GGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKI-VHAVTLSTNTPEEV 891
            G  P    H ++  H   ST         D K+LGLTPEL RL K F + P+ K+R  QLL+LAQ  + L     T ENKV GCLSTV+V  +  D+  ++F+ DSDA +TKGL  LL  GL+G T E I+ + PEF+ VAGL  SLT GRNNGF+NML+TMK KA             G   + R    Q  P   E       G + + I +KLQ+L+P +LE+ D+S               E+ F + +VS AF GL+L+KRH+ VY ++  E+K  +HA+ +   TP EV
Sbjct:   35 GREPNCCFHNKKRLHFPKSTFRLQIRCQVDEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDC-DNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETA----SGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSEV 324          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 181 bits (459), Expect = 9.150e-50
Identity = 113/274 (41.24%), Postives = 162/274 (59.12%), Query Frame = 1
Query:  148 MSTSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKD----DGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSL-------GGEPALRAAMEQVMP--DEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDESGGE-------------ESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEV 891
            M+ +++++ LGLTPELE++TK F S P+ K+R  QLL++A     LDP LM  ENKV GCLSTVYV    +D    + ++ F  DSD  +TKGL  LL  G+SG T E IQ V PEFI  A +  SLT GRNNGF+NML  MKAKA S        GGE A  A  E V+   DE+       G  M   + + L +L+P+ LE+ D+S                ES F++++V++ F+G+ L+KRH+ +Y ++ + M  +HA++++   P +V
Sbjct:   50 MADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYSVGADNSGGEEA-DADTEGVISSFDEIA------GKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQV 316          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A7S4I3L9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.120e-49
Identity = 119/271 (43.91%), Postives = 155/271 (57.20%), Query Frame = 1
Query:  157 STDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAA-----EVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDEVEQE-------EKQEGGTMAARIADKLQ-QLEPLKLEIQDES----------GGEES---KFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEV 891
            +T    LGLTPEL R+T  F S P+ KMR  QLL +A     + P  M  ENKV GCLSTVYV A     E + + +V F  +SD ++TKGL  LL  GLSG T E +Q V PEFI  A +  SLT GRNNGF+NML  MK KA  +GG  A  A  +    +E E E       E+ EG  M   +  KL   L+P  +E+ D S          G EES    F I+IV++AF+GL+L+KRH+ VY ++ D M+ +HA+ +   TP+EV
Sbjct:   76 ATTADPLGLTPELRRMTDAFASIPDEKMRYKQLLFMANQLPAISPDAMVPENKVPGCLSTVYVDAVMERDEERGEDVVKFLGESDGLLTKGLVALLVRGLSGCTAEEVQRVNPEFIHEAKISQSLTPGRNNGFLNMLAVMKKKAAEIGGPEAAAAGDDAGSVEEGEDEVAATLTFEEVEGKPMYNAMMAKLTTMLKPTSIELVDNSDQHAGHAGSKGWEESGESHFSINIVAEAFDGLSLVKRHQLVYMLLGDIMQKIHALQIVARTPDEV 346          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A7S2ZLB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLB0_9RHOD)

HSP 1 Score: 177 bits (450), Expect = 8.890e-49
Identity = 114/273 (41.76%), Postives = 155/273 (56.78%), Query Frame = 1
Query:  115 RAARHRRRAHHMSTSTDLK--ELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGL-VYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDES--------GGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKI----VHAVTLSTNTPEE 888
            R   +R+R   + T+ D++   L LTP LE++    +  P++K+R  QLLH A     ++P L TE NKV GCLSTV+V AE+  D   VYF+ DSDA +TKGL  +L  GLSG+T   I+ V P+FIK +GL  SLT GRNNGFINML+ MK KA  L  E A          DE   E +  G   A  I   L QL P++LE++D S         G+E+   I +VS+AFE + L+ RH+ +Y ++   M      VHA+ + T  P E
Sbjct:   18 RDGAYRKRLGTIMTAADVEMSSLNLTPALEKMVSSLKMFPDSKVRYQQLLHYASTLGPMEPELKTEMNKVPGCLSTVFVHAEMNPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIEKVNPDFIKASGLTVSLTPGRNNGFINMLKLMKRKAAVLDEEAAGLGPRSTGQTDEDAVEFEVPGKPRATAIGRALMQLNPIELEVEDFSESHKGHAHAGDETHIRIKVVSEAFEDMPLVLRHKVIYTLLDSFMDKGSGGVHALQMDTKAPGE 290          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 173 bits (438), Expect = 2.920e-47
Identity = 114/260 (43.85%), Postives = 147/260 (56.54%), Query Frame = 1
Query:  154 TSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYV--AAEVKDDGLVY--FQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQD----------ESGGEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEV 891
            T TD   + LTPEL ++   F S  ++K+R  QLL++A     +DPS    ENKV GCLSTVYV   A  K DG++   F  DSD ++TKGL  LL  GLSGNT E IQ V P FI+  G+ ASLT GRNNGF+NML  MK KA  L       A  +   P E       +   M   I   LQ L+P+ L+++D           S   E+ F + IV+ AFEGL L+KRH+ VY ++ D M  +HA+ +S  TPEEV
Sbjct:   16 THTD-NPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQL------EANYQATGPSESATTTAGDEKPMYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEEV 268          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A8J5XHT0_DIALT (SufE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHT0_DIALT)

HSP 1 Score: 170 bits (431), Expect = 5.850e-46
Identity = 107/256 (41.80%), Postives = 149/256 (58.20%), Query Frame = 1
Query:  175 LGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDEVEQEEKQEGGTMAARIADK-----LQQLEPLKLEIQDESG------------GEESKFMISIVSKAFEGLALLKRHRSVYGIIADEMK-IVHAVTLSTNTPEE 888
            LGLTPELE++ +VF+  P+ K+R  QLL LAQ    +D  L   ENKV GCLSTV+V A     G +++  DSDAM+TKGL  LL+ GLSG+T + I  V P+FI+ AG+ ASLT GRNNG +NML  MK KA +L G  A+ +      P         EGG   A +AD      L +L+P  + ++D S               E+ F + +VS  F GL+L++RH+ +Y ++A+EM   VHA+ ++  T  E
Sbjct:   40 LGLTPELEQVVEVFKMVPDQKLRYQQLLFLAQKAKPMDAVLKVPENKVPGCLSTVFVHATADSSGNIFYTGDSDAMLTKGLVVLLTDGLSGHTADEILAVDPKFIQEAGIAASLTPGRNNGLLNMLALMKQKAKALAG-VAVPSGPSAANPSASPPAPVVEGG--GAPVADSIIGKVLAKLKPTTVRLRDNSAQHAGHAGREGLAASETHFALEVVSDVFSGLSLVQRHQLIYALLAEEMAGSVHALQITARTTAE 292          
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Match: A0A7S2NSI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSI8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.370e-46
Identity = 111/269 (41.26%), Postives = 153/269 (56.88%), Query Frame = 1
Query:  139 AHHMSTSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLMTEENKVLGCLSTVYVAAEVKDD---GLVYFQTDSDAMITKGLAGLLSMGLSGNTPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPALRAAMEQVMPDE---VEQEEKQEGGTMA-ARIADKLQQLEPLKLEIQDES-------GGE----ESKFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEV 891
            +H M TS+ L    LTPELE +T  F   P+ K+R  QL+ LAQ    +  +L  + NKV GCLSTV+V A + D     +V +  DSD ++TKGL  LL  GLSGNT E I  V P+F+  AG+ ASLT GRNNGF+NML TMK +A  +       A  E         V   ++QEG  M  A ++  +  L+P  + + D S       G +    ES F + IV++ F+GLAL+KRH+ +Y I+ + M  +HA+ +  NTPEEV
Sbjct:   24 SHRMVTSSALNAENLTPELEMMTAAFARMPDEKLRYKQLMFLAQKLAPMPDNLKIDANKVPGCLSTVHVHATLDDSVEPPVVNYTGDSDGILTKGLVALLVRGLSGNTAEVIDKVTPDFVNTAGISASLTPGRNNGFLNMLATMKKQANEVTAGATTTATNEXXEISSASIVTSFDEQEGRPMYNAMMSTLINFLKPTSINLVDNSHQHAGHAGSKGYDGESHFELEIVAECFDGLALVKRHQLIYTILGEIMPKIHALQIKANTPEEV 292          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8715.20264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE5.670e-13870.63SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA1.650e-6751.11Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
A0A7S1T9Y1_9RHOD1.240e-5147.24Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2XAG5_GALSU1.440e-5141.02Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A7S3Q629_9STRA9.150e-5041.24Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4I3L9_9STRA2.120e-4943.91Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2ZLB0_9RHOD8.890e-4941.76Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1Z5K9T0_FISSO2.920e-4743.85SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A8J5XHT0_DIALT5.850e-4641.80SufE domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S2NSI8_9STRA9.370e-4641.26Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8715contigM-pyrifera_M_contig8715:3961..8560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.7
Seed ortholog evalue2.2e-117
Seed eggNOG ortholog2880.D7G7R0
Preferred namebola1
KEGG koko:K22066
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons4
Model size1360
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8715.20264.1prot_M-pyrifera_M_contig8715.20264.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8715 3961..8100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.0672905-CDS-M-pyrifera_M_contig8715:3960..42831622816781.0672905-CDS-M-pyrifera_M_contig8715:3960..4283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 3961..4283 +
1692278174.670011-CDS-M-pyrifera_M_contig8715:3960..42831692278174.670011-CDS-M-pyrifera_M_contig8715:3960..4283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 3961..4283 +
1622816781.080288-CDS-M-pyrifera_M_contig8715:5891..60921622816781.080288-CDS-M-pyrifera_M_contig8715:5891..6092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 5892..6092 +
1692278174.6828606-CDS-M-pyrifera_M_contig8715:5891..60921692278174.6828606-CDS-M-pyrifera_M_contig8715:5891..6092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 5892..6092 +
1622816781.0944376-CDS-M-pyrifera_M_contig8715:6922..70871622816781.0944376-CDS-M-pyrifera_M_contig8715:6922..7087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 6923..7087 +
1692278174.6931639-CDS-M-pyrifera_M_contig8715:6922..70871692278174.6931639-CDS-M-pyrifera_M_contig8715:6922..7087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 6923..7087 +
1622816781.1086023-CDS-M-pyrifera_M_contig8715:7889..81001622816781.1086023-CDS-M-pyrifera_M_contig8715:7889..8100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 7890..8100 +
1692278174.708699-CDS-M-pyrifera_M_contig8715:7889..81001692278174.708699-CDS-M-pyrifera_M_contig8715:7889..8100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 7890..8100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.1219056-UTR-M-pyrifera_M_contig8715:8100..85601622816781.1219056-UTR-M-pyrifera_M_contig8715:8100..8560Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8715 8101..8560 +
1692278174.721228-UTR-M-pyrifera_M_contig8715:8100..85601692278174.721228-UTR-M-pyrifera_M_contig8715:8100..8560Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8715 8101..8560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8715.20264.1

>prot_M-pyrifera_M_contig8715.20264.1 ID=prot_M-pyrifera_M_contig8715.20264.1|Name=mRNA_M-pyrifera_M_contig8715.20264.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=300bp
MTSRVSLLVAALASGICSVGQAFVTLNAIASPGGGFSPRAARHRRRAHHM
STSTDLKELGLTPELERLTKVFRSCPNNKMRQMQLLHLAQMGDKLDPSLM
TEENKVLGCLSTVYVAAEVKDDGLVYFQTDSDAMITKGLAGLLSMGLSGN
TPESIQTVKPEFIKVAGLHASLTAGRNNGFINMLRTMKAKALSLGGEPAL
RAAMEQVMPDEVEQEEKQEGGTMAARIADKLQQLEPLKLEIQDESGGEES
KFMISIVSKAFEGLALLKRHRSVYGIIADEMKIVHAVTLSTNTPEEVGM*
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mRNA from alignment at M-pyrifera_M_contig8715:3961..8560+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8715.20264.1 ID=mRNA_M-pyrifera_M_contig8715.20264.1|Name=mRNA_M-pyrifera_M_contig8715.20264.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4600bp|location=Sequence derived from alignment at M-pyrifera_M_contig8715:3961..8560+ (Macrocystis pyrifera P11B4 male)
ATGACCTCACGGGTTTCTTTGTTAGTAGCTGCGCTGGCCTCTGGCATCTG CTCGGTTGGCCAGGCCTTTGTGACTCTGAATGCTATAGCATCCCCAGGCG GCGGGTTTTCACCCCGCGCAGCCCGTCATCGCCGCCGCGCCCACCACATG TCCACGTCGACTGACCTCAAGGAGCTAGGGTTGACTCCAGAGCTGGAGCG ATTGACGAAAGTTTTCAGGTCGTGTCCAAACAACAAGATGCGGCAGATGC AGCTTCTGCATCTTGCGCAGATGGGAGATAAGTTGGACCCGTCACTCATG ACAGAGGAGAACAAGGTCTTGGGGTGAGTGGTCGCCTACGAGTACTACAC AGTTGGATAGGATCAGGGGCGGTGCAATATGTAGATTTCCGGGCTGCCCA CCAGATCCCGTGGGTTGTTCATAGCCTACGGCCTGTTTTGTTCGGAATCA AGATGCTGCTGTTGATGATAGCGTGCACATTCTTAACTATTGAGGGCTTC CGTTCGGGCGCGCCAGTTTATATCATCATCGTTGTGGCTATATCCGTACT GTTGTAGCTTACATAGCCTTGGAGCCATCATTCCAATTACAGCAGTACAC CAGGTATGGGCTTGTTACCGGACGTTTTTTTTCGCGTTTCGAGGAAAATT CCCGGATTTCAGCTATTTTTTTTCGAGTTTCGCGGAATTTTTGTCAGCCC CGACAATATACCTACCTGGTACCCTGGTAAAAATCAATTTCCCGTGTCGC GGAAAAGTCCCGCATCGTGGCAGAACATCGGGCAGGGGCACCGTGTGAGC CGTGTCTCCACTTTAGACACAATACATGACAGATCAGGGTCATCCCCAGG GTCATTCCCAGGCCGTGGCTGATCGCAGAAAACGCCGTGCGCAACGAGAG CTCTATTCGTCCAGTCGACAGAGCCGACTCACCGGCATAGCCGACATCAA AACTAAATCTCCAACTATTTTTATGTCGTGGAGGGCTTGGTCGCGCCAGA AGTTGATTGAAGCAACGCTCGCGTGGTACGGCGAGGCACGGTCGCCTCTC TAGGAGCTGGGGGACCTCTAGCGGTACGATCCAGCGGACGGCCTGCGCAC GCGCCGCTGGTTTCGACGATTCGATCAGATAGACGAGCGTTGCAACCTCA TGGAACATGATACCAGGATATCAGGCGATAATAGGACCCACCGCATTTTT TTCGCGTTTCCGTGATCTTTCCGCGAAAGGAGAAAAAAAAATCCAGTTAA TAATGCCTCTAAGCAGGGGTCTAATTGCGCGTACCCACTACTCGCCTCCC CGCGTGGAATACCTGGCACCTGGTATGTAAGGCGGTTGAGTTCGAAATAT AGCTGTGTACTATCCGACCCCAGCGCAGCCGAGTGCTTGCTACTGGAGGC GCAGTGAGCATACACTCACTTACCGCGTACGTAGGGTGGGAGTGGCTAGC GGGGATGATGTCTCCTCGAACATGATACCTGGTACCTGGTAGCCTTCCAT GGCGTTATTTATTTTTCAGATTGCACCACACAACAACCCAACAGCCATCG GTCATTAGTCAATGCGCCGAGGTCGACAACGACGACTCTGGTTGATTAAG TCTAGTGTTTGAGGCTCCACCTTCGGCCACCATTTTGTTTGTTTTGTTGT CGTGTGTTTGCTCGGCCAGAGTACTCCAACGACCCTTCCCGTTCCTGCTA CGAAACTAAAATTATTTCTAGAAGACATGTGATAGCAACGGCAAATAATC AACTCATTGACCTGCGGCAGTATACGTACGACGTATACTAAGTATATTAT TGTATGCGTATACTGCTATAGCGTTTACCCTCCTAGCTCTCGATGTGTAC TCCACATCTGTCTACAGGGCAAGAGCCGCCTTGTTGCCGATCATCGCGCC ATTGCCTTGACCCCACCCCTTCCTCGTTTAGGTGCCTCTCCACGGTGTAC GTGGCGGCAGAGGTGAAGGACGATGGCCTCGTCTACTTCCAAACGGATTC GGACGCCATGATCACCAAGGGCCTTGCTGGGCTTCTTTCGATGGGACTGT CCGGCAACACTCCCGAGTCGATCCAGACCGTCAAGCCGGAGTTTATTAAG GTGGCGGGTCTTCACGCTAGCCTCACAGCAGGGTGCGTTGCGGTCAGAGC AAGCCGCCGACACGTACATTACGAATGTGTTGCCGTGGTGTTCTTGTTCC GTTGCAGCTCTCTAGCTCAAAAGTTGCTGTGTACCTCTAGCAACGGGGAA GTTTGTGTGTAGACATACGACGACACCCCAAGGTTGAGTGAATTCGTCGC TGCATCTCTGTAGTTCAGCGAGAATGAGAGGCAACATGCAGTTTAGAGGT TTGTCTGCGCGGTGTTATGTTGTTTTCATGTATTTCTTGACCTCGCCTGC GCGGTGTTATGTTGTTTTCATGTATTTCTTGACCTCGCCGGCTCGGGCAG TGCATTCATCCCCTCTGCTATGACAATGTTTCGTGACTCTCAATCGGCTC TGGTATCTGTTACGTAGACCCACTACGATTACTACTGCAGCAGTAGTCTG GTGCATCGTGTCTGTTCTGAATCACATGTCATCTTCACCAAAGGGTCTAG TGTTCGGATCCCTGCGAAAGGAAACTATTACGTACTGGGGAACCTCGCCA GTCACATCCAAGTACATACCAGGTATACAAAAGGTGTCCTAGACACACAC CCTGTGTTTATTTTGACCACGTATTCTAGATCAGAATCTCTGCCTGGTTT GTTCCTCTCGAGCGGTGTTTTAGTTACGGCGGAGCTGCTGAAAACTCCTC GGTCGGTCGACTGCGCGTCGGCGGCTGATATTACGTTTGACGAAACTAGA ATAGTCCCCGATGTGCTCGATGGGTGCTCGATCGTGTTTTAGACCATTTT TTTGCTCGCCTGGTCTCCGACACACAGTACTCCGTACCAACTCTCTGCTT AATCTTTGGTAGGCGCAACAACGGTTTCATCAATATGCTGCGAACAATGA AAGCAAAGGCGCTTTCTCTGGGCGGCGAGCCTGCCCTTCGTGCAGCAATG GAGCAAGTGATGCCGGATGAAGTCGAGCAGGAGGAGAAACAGGAGGGCGG GACGATGGCGGCACGAATTGCCGACAAGTAAGTTAACCATTTCCGTCAAG GGGACCACTCTCTCGGAAGTTGCTACCATGTACATGCCGACATCATAAGG AGCTATAAATGTGTGTGGCTCTCAGACTGATGATTAGTCGTGTATTTTTT CGTGATAGTCCATCGCCCAGAGCTCTTATAATTACCGTGGTAAGTCATAG ACAGGCAGTGGCCTCATTATTAACACCAGTACGGTATGTGATTATGTTTT GTTCCAGTCCAAAATTGTCGGTTCGAAATCGTTGAAAGTCAGGTGCGTCG AGAAACAATGTTTCGATGCGTTTGATTCCAGCGCATTGTGCTGCGAGAAT GTCAACTTGACTACCAACTGCAGCCTCAGCTGTGAAAAGTTGGAACCCTG GTTCGGCTCATGCGTGTCGGACAGCTTTGTTTCCGGAAATTCCAAAGTTT GGAAATAACTGGAGATATGTATCAAGATACGGAGGCGTTCTGTCACTATT CATGAAATTCTCCACTAGCGAAAAAATCAGGGAAGTTAAATTTCACATAT TTGGAAAAAAAAATCAGGAAAATCTGGAAGACTGAAAAATTACGCGAAAA AAATATGGAAATTATGGGAAAAAAAGCTCTCCGATAAGAATGACCCTTAC TAGTAGTAGTGTTTCGCTGGAGTGACGAAGCCGTCGGATGCCAAAAAGTT TCAAGCAAGGTGTATGGCATACTAGTGATAGTGGCATGAGGCTTTGGTGT ATGGAACGCCTGCACACCAAGTACTATATCTGCATTTATATTCAAGTCTT GCTTGAAACGATCGCATTTATTTGTCCAGGTTGCAACAATTAGAGCCTTT GAAGTTAGAGATCCAGGACGAGTCGGGCGGGGAGGAGTCCAAGTTCATGA TCAGCATCGTGAGCAAAGCTTTCGAAGGCTTGGCGCTGCTCAAACGACAC CGGTCTGTGTACGGCATCATTGCCGACGAAATGAAAATTGTACACGCTGT AACGCTTTCCACTAACACCCCCGAGGAAGTGGGAATGTGAGCGGTCGCGT TTGGAGCCTTGTAAGCTGCACAAAACCGCATTAAAGACGCGTGCGAGAGA GTCACGTTGCACTCGTAGTTGGCCACGCCTTGATTTGAAGCGCGAGTCGG GTCTGAAGAGCATGTATGCACTTTTCTTGGGGACTACCATTGAAATTTGA CTGCTGTTGCTGCTCGTGTAAGCCTTGTATCATGTGTCCTGTGCTGTGCG ACCTGTCCCCCCCGTTGAAGATTCGACGCCGCACCATATGCCTCATTTTT GTAGGGGGGGGGGAGGTGCTTGTCTTGAGATTAGTCACGCTGGCGTCGGC AGCGGGCGCTGGTGTGGGTCAAACTGCTATTTTACCTGCCATAATACTGG CTATTTTTCCTTTCCGTTTTGTGAATTTGTTTTTCCTGTACCCTTGTATT GCGAAGACAAAGTTTCATCATTGTGGAAAGAATGCGAATTATTGTTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8715:3961..8560+

>mRNA_M-pyrifera_M_contig8715.20264.1 ID=mRNA_M-pyrifera_M_contig8715.20264.1|Name=mRNA_M-pyrifera_M_contig8715.20264.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1800bp|location=Sequence derived from alignment at M-pyrifera_M_contig8715:3961..8560+ (Macrocystis pyrifera P11B4 male)
ATGACCTCACGGGTTTCTTTGTTAGTAGCTGCGCTGGCCTCTGGCATCTG
CTCGGTTGGCCAGGCCTTTGTGACTCTGAATGCTATAGCATCCCCAGGCG
GCGGGTTTTCACCCCGCGCAGCCCGTCATCGCCGCCGCGCCCACCACATG
TCCACGTCGACTGACCTCAAGGAGCTAGGGTTGACTCCAGAGCTGGAGCG
ATTGACGAAAGTTTTCAGGTCGTGTCCAAACAACAAGATGCGGCAGATGC
AGCTTCTGCATCTTGCGCAGATGGGAGATAAGTTGGACCCGTCACTCATG
ACAGAGGAGAACAAGGTCTTGGGATGACCTCACGGGTTTCTTTGTTAGTA
GCTGCGCTGGCCTCTGGCATCTGCTCGGTTGGCCAGGCCTTTGTGACTCT
GAATGCTATAGCATCCCCAGGCGGCGGGTTTTCACCCCGCGCAGCCCGTC
ATCGCCGCCGCGCCCACCACATGTCCACGTCGACTGACCTCAAGGAGCTA
GGGTTGACTCCAGAGCTGGAGCGATTGACGAAAGTTTTCAGGTCGTGTCC
AAACAACAAGATGCGGCAGATGCAGCTTCTGCATCTTGCGCAGATGGGAG
ATAAGTTGGACCCGTCACTCATGACAGAGGAGAACAAGGTCTTGGGGTGC
CTCTCCACGGTGTACGTGGCGGCAGAGGTGAAGGACGATGGCCTCGTCTA
CTTCCAAACGGATTCGGACGCCATGATCACCAAGGGCCTTGCTGGGCTTC
TTTCGATGGGACTGTCCGGCAACACTCCCGAGTCGATCCAGACCGTCAAG
CCGGAGTTTATTAAGGTGGCGGGTCTTCACGCTAGCCTCACAGCAGGGTG
CCTCTCCACGGTGTACGTGGCGGCAGAGGTGAAGGACGATGGCCTCGTCT
ACTTCCAAACGGATTCGGACGCCATGATCACCAAGGGCCTTGCTGGGCTT
CTTTCGATGGGACTGTCCGGCAACACTCCCGAGTCGATCCAGACCGTCAA
GCCGGAGTTTATTAAGGTGGCGGGTCTTCACGCTAGCCTCACAGCAGGGC
GCAACAACGGTTTCATCAATATGCTGCGAACAATGAAAGCAAAGGCGCTT
TCTCTGGGCGGCGAGCCTGCCCTTCGTGCAGCAATGGAGCAAGTGATGCC
GGATGAAGTCGAGCAGGAGGAGAAACAGGAGGGCGGGACGATGGCGGCAC
GAATTGCCGACAAGCGCAACAACGGTTTCATCAATATGCTGCGAACAATG
AAAGCAAAGGCGCTTTCTCTGGGCGGCGAGCCTGCCCTTCGTGCAGCAAT
GGAGCAAGTGATGCCGGATGAAGTCGAGCAGGAGGAGAAACAGGAGGGCG
GGACGATGGCGGCACGAATTGCCGACAAGTTGCAACAATTAGAGCCTTTG
AAGTTAGAGATCCAGGACGAGTCGGGCGGGGAGGAGTCCAAGTTCATGAT
CAGCATCGTGAGCAAAGCTTTCGAAGGCTTGGCGCTGCTCAAACGACACC
GGTCTGTGTACGGCATCATTGCCGACGAAATGAAAATTGTACACGCTGTA
ACGCTTTCCACTAACACCCCCGAGGAAGTGGGAATGTGAGTTGCAACAAT
TAGAGCCTTTGAAGTTAGAGATCCAGGACGAGTCGGGCGGGGAGGAGTCC
AAGTTCATGATCAGCATCGTGAGCAAAGCTTTCGAAGGCTTGGCGCTGCT
CAAACGACACCGGTCTGTGTACGGCATCATTGCCGACGAAATGAAAATTG
TACACGCTGTAACGCTTTCCACTAACACCCCCGAGGAAGTGGGAATGTGA
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