mRNA_M-pyrifera_M_contig87096.20251.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87096.20251.1
Unique NamemRNA_M-pyrifera_M_contig87096.20251.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A5A8CM84_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CM84_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 2.570e-25
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +GTYDP+P K DG KE+RLK+DRV+YWLS GAQP++TVA+LL +A + PPPPI+F TK+H+ R E+
Sbjct:   37 VGTYDPMPRKSDGFKEIRLKVDRVKYWLSTGAQPTETVAKLLWRAGLAPPPPIAFTTKRHIKRSER 102          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A812IX11_9DINO (RPS16-2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812IX11_9DINO)

HSP 1 Score: 90.5 bits (223), Expect = 1.420e-21
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +GTYDPIP+++DG+KE+RL+ DR+++WL+ GAQP+DTVA LL KA ++P PP+ FQ  K  PR E+
Sbjct:   37 VGTYDPIPNERDGMKELRLRTDRIKFWLASGAQPTDTVAVLLWKAGLIPAPPVRFQPTKSTPRAER 102          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A7S2KAU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAU0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.160e-20
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            LGTY+PI + KDGIKEVRLK DR +YWLSVGAQPSD V  LL K  +LPPPP+  + ++ +P+ E+
Sbjct:   49 LGTYNPI-ANKDGIKEVRLKSDRFKYWLSVGAQPSDRVGWLLGKFGILPPPPVPHRPQRSIPKEER 113          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A1Z5K548_FISSO (Small subunit ribosomal protein S16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K548_FISSO)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-19
Identity = 37/66 (56.06%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +GTY+PI + +DG+KE+RLK DR++YWLSVGAQPSD V+ +L K  +LPPPP  F  +K +P+ E+
Sbjct:   37 VGTYNPI-ANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSER 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A6U3BLK8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BLK8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.090e-19
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            LG+Y+PIP+K  G KE+RLK DRV+YW+SVGAQPSD VA +L K  +LPPPP  +  +K +P+ ++
Sbjct:   37 LGSYNPIPNKA-GNKEIRLKTDRVKYWISVGAQPSDRVAWILGKFGILPPPPTRYHPQKSIPKNQE 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A7S2RKN7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKN7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.210e-19
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            LGTY+PI + K+GIKE+RLK DR+RYWLSVGAQPSD V  +L K  +LPPPP  +  +K +P+ ++
Sbjct:   37 LGTYNPI-ANKEGIKEIRLKTDRLRYWLSVGAQPSDRVGWILGKFGILPPPPPRYNPQKMVPKKDR 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A7S1H3T9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3T9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.980e-19
Identity = 37/66 (56.06%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +GTY+PI SK DGIKE+RLK DR++YWL+VGAQPSD VA +L K  +LPPPP  +  ++ +P+ ++
Sbjct:   37 VGTYNPIASK-DGIKEIRLKTDRLKYWLAVGAQPSDRVAWILGKFGILPPPPQRYSPQRMIPKKDR 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: K8ZAJ3_NANGC (Small subunit ribosomal protein S16 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAJ3_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 8.580e-19
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 QLGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +LG+YDPI SK DG+KEVRL  DR++YWLSVGAQPSD VA L++K  +LP  P+   T +HLPR E+
Sbjct:   36 RLGSYDPIASK-DGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKER 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: A0A7S0C1J3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1J3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-18
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 LGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            +G+Y+PIP+K  GIKEVRLK DR+RYW+SVGAQPSD VA +L K  VLPP P  F  +K +P+ ++
Sbjct:   37 VGSYNPIPNKH-GIKEVRLKTDRLRYWISVGAQPSDRVAWVLGKFGVLPPAPPKFSPQKMIPKKDR 101          
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Match: UPI0007120B8D (ribosomal protein S16 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007120B8D)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-18
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 QLGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLPPPPISFQTKKHLPRGEQ 201
            ++GTY+PIP   DG+KE+RL +DR++YWLSVGAQPS+TVA LL +A +LPPPP+        PR +Q
Sbjct:   32 EVGTYNPIPLD-DGVKELRLNVDRIKYWLSVGAQPSETVAVLLGRAGILPPPPLHPYDISAQPRKQQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87096.20251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CM84_CAFRO2.570e-2563.64Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A812IX11_9DINO1.420e-2157.58RPS16-2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A7S2KAU0_9STRA5.160e-2060.61Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5K548_FISSO1.070e-1956.06Small subunit ribosomal protein S16 n=2 Tax=Fistul... [more]
A0A6U3BLK8_9STRA2.090e-1956.06Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2RKN7_9STRA4.210e-1957.58Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1H3T9_9STRA5.980e-1956.06Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
K8ZAJ3_NANGC8.580e-1961.19Small subunit ribosomal protein S16 n=3 Tax=Monodo... [more]
A0A7S0C1J3_9STRA1.200e-1859.09Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
UPI0007120B8D1.240e-1856.72ribosomal protein S16 n=1 Tax=Blastocystis sp. sub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87096contigM-pyrifera_M_contig87096:98..298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.3
Seed ortholog evalue7.4e-13
Seed eggNOG ortholog38727.Pavir.Fa00413.1.p
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein S16
EggNOG OGs37UTU@33090,3GIRP@35493,3IQPP@38820,3M6II@4447,COG0228@1,KOG3419@2759
COG Functional cat.J
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.392368-CDS-M-pyrifera_M_contig87096:97..2981622816780.392368-CDS-M-pyrifera_M_contig87096:97..298Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87096 98..298 +
1692278174.3067808-CDS-M-pyrifera_M_contig87096:97..2981692278174.3067808-CDS-M-pyrifera_M_contig87096:97..298Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87096 98..298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87096.20251.1prot_M-pyrifera_M_contig87096.20251.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87096 98..298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87096.20251.1

>prot_M-pyrifera_M_contig87096.20251.1 ID=prot_M-pyrifera_M_contig87096.20251.1|Name=mRNA_M-pyrifera_M_contig87096.20251.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
QLGTYDPIPSKKDGIKEVRLKMDRVRYWLSVGAQPSDTVARLLAKAAVLP
PPPISFQTKKHLPRGEQ
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mRNA from alignment at M-pyrifera_M_contig87096:98..298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87096.20251.1 ID=mRNA_M-pyrifera_M_contig87096.20251.1|Name=mRNA_M-pyrifera_M_contig87096.20251.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig87096:98..298+ (Macrocystis pyrifera P11B4 male)
CAGTTGGGCACGTATGATCCTATTCCGAGCAAGAAGGATGGGATCAAGGA GGTTCGTCTCAAGATGGATCGTGTGCGATATTGGCTGTCTGTTGGAGCAC AGCCCTCTGACACTGTGGCACGGCTCTTGGCCAAGGCCGCAGTGCTCCCA CCGCCGCCCATCTCTTTCCAGACCAAGAAACACCTTCCCCGAGGGGAACA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87096:98..298+

>mRNA_M-pyrifera_M_contig87096.20251.1 ID=mRNA_M-pyrifera_M_contig87096.20251.1|Name=mRNA_M-pyrifera_M_contig87096.20251.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig87096:98..298+ (Macrocystis pyrifera P11B4 male)
CAGTTGGGCACGTATGATCCTATTCCGAGCAAGAAGGATGGGATCAAGGA
GGTTCGTCTCAAGATGGATCGTGTGCGATATTGGCTGTCTGTTGGAGCAC
AGCCCTCTGACACTGTGGCACGGCTCTTGGCCAAGGCCGCAGTGCTCCCA
CCGCCGCCCATCTCTTTCCAGACCAAGAAACACCTTCCCCGAGGGGAACA
ACAGTTGGGCACGTATGATCCTATTCCGAGCAAGAAGGATGGGATCAAGG
AGGTTCGTCTCAAGATGGATCGTGTGCGATATTGGCTGTCTGTTGGAGCA
CAGCCCTCTGACACTGTGGCACGGCTCTTGGCCAAGGCCGCAGTGCTCCC
ACCGCCGCCCATCTCTTTCCAGACCAAGAAACACCTTCCCCGAGGGGAAC
AA
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