mRNA_M-pyrifera_M_contig87094.20250.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87094.20250.1
Unique NamemRNA_M-pyrifera_M_contig87094.20250.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A5A8DVL3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVL3_CAFRO)

HSP 1 Score: 97.8 bits (242), Expect = 1.600e-21
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   31 LEILTVFPEAGFAREEAMVILFSRMKLVGDFWPKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAEPGENF 315
            L I  V P   FAR E +V +FSR+  +   W +++PLL    +R   CRRLGWLNV NP   +  Y LDL++ DERRLA+ LV+LA+AEPG N 
Sbjct:  651 LLIRVVPPHMAFARVEMLVAVFSRLTDISTVWRRLVPLLGQWPDRREACRRLGWLNVINPMHAEGYYHLDLSVHDERRLAQSLVILAVAEPGPNI 745          
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A5A8C8M3_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8M3_CAFRO)

HSP 1 Score: 97.8 bits (242), Expect = 1.640e-21
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   31 LEILTVFPEAGFAREEAMVILFSRMKLVGDFWPKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAEPGENF 315
            L I  V P   FAR E +V +FSR+  +   W +++PLL    +R   CRRLGWLNV NP   +  Y LDL++ DERRLA+ LV+LA+AEPG N 
Sbjct: 1187 LLIRVVPPHMAFARVEMLVAVFSRLTDISTVWRRLVPLLGQWPDRREACRRLGWLNVINPMHAEGYYHLDLSVHDERRLAQSLVILAVAEPGPNI 1281          
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A7S3D4F4_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D4F4_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 2.490e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    7 LRIKTNHVLEILTVFPEAGFAREEAMVILFSRMKLVGDFWPKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAEPGENF 315
            L +  + +  +L V P  G  R E +  +F R+  +  F+  V+ L  + ++R  +  RLGWL V+NP  PD  Y+LDL   D+R +AE L+ LA+AEPGEN+
Sbjct:  731 LYLTVSQLCSLLEVVPGEGLTRIELITGVFGRIIDLEYFFRHVV-LSLNPDHRQVLVDRLGWLAVWNPLDPDGYYELDLGKRDDRVVAEGLIALAVAEPGENW 832          
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A7S1UGK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGK5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.360e-10
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   67 AREEAMVILFSRMKLVGDFWPKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAEPGENFK 318
            AR + +V  FSR+  V +F  ++       E    + RRLGWLN+ NP++PD  Y  DL + +     EVL  LAIAEPGENFK
Sbjct:  362 ARVDLVVDCFSRLSDVQNF-NRIFHTCGKAEQA-ALSRRLGWLNILNPESPDWFYRFDLGVHEHIVALEVLTTLAIAEPGENFK 443          
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A1V9YIC2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIC2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.250e-10
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   13 IKTNHVLEILTVFPEA-GFAREEAMVILFSRMKLVGDFW--PKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAEPGENFK 318
            I     L +L ++P     AR +  ++L  R   V D +  P++  +L++ E    + R  GWLN++ P  PD  Y+LD+AI ++R +A++LV LA+ EPGEN++
Sbjct: 1021 ISVKQCLRLLCMWPRPFKAARIDIALLLIDR---VVDLYNVPQIFAILSEREIAELIFR-YGWLNIWTPLVPDIYYELDMAIYEQREVAQMLVHLALNEPGENWQ 1121          
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Match: A0A7S3ZIZ3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIZ3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.740e-9
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   13 IKTNHVLEILTVFPEAGFAREEAMVILFSRMKLVGDFWPKVLPLLTDEENRYRVCRRLGWLNVFNPQAPDTS---YDLDLAIPDERRLAEVLVVLAIAEPGENF 315
            + T  VL+++   P     R E ++ LF R+  +  F      L  DE +   +  RLG+LN  NP A +     Y L+L IPDE ++AE LV LAI EPG N+
Sbjct: 1277 LSTAQVLQVVQRLPSIDLLRVEGIISLFGRIVDLDKFHELWRELTHDEGDE--LIHRLGYLNAGNPMAMEWGGRVYKLNLKIPDEYKMAEALVKLAILEPGTNW 1378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87094.20250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8DVL3_CAFRO1.600e-2149.47Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8C8M3_CAFRO1.640e-2149.47Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S3D4F4_9EUKA2.490e-1238.83Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A7S1UGK5_9STRA1.360e-1044.05Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9YIC2_9STRA9.250e-1035.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3ZIZ3_9STRA1.740e-937.50Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87094contigM-pyrifera_M_contig87094:520..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog65071.PYU1_T003493
KEGG koko:K16275
Hectar predicted targeting categoryother localisation
EggNOG free text desc.leucine rich repeat calcium binding protein. Source PGD
EggNOG OGs1MGG1@121069,KOG0032@1,KOG0032@2759,KOG4308@1,KOG4308@2759
EC2.3.2.27
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.3555112-CDS-M-pyrifera_M_contig87094:519..8371622816780.3555112-CDS-M-pyrifera_M_contig87094:519..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87094 520..837 +
1692278174.2931178-CDS-M-pyrifera_M_contig87094:519..8371692278174.2931178-CDS-M-pyrifera_M_contig87094:519..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87094 520..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87094.20250.1prot_M-pyrifera_M_contig87094.20250.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87094 520..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87094.20250.1

>prot_M-pyrifera_M_contig87094.20250.1 ID=prot_M-pyrifera_M_contig87094.20250.1|Name=mRNA_M-pyrifera_M_contig87094.20250.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
AELRIKTNHVLEILTVFPEAGFAREEAMVILFSRMKLVGDFWPKVLPLLT
DEENRYRVCRRLGWLNVFNPQAPDTSYDLDLAIPDERRLAEVLVVLAIAE
PGENFK
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mRNA from alignment at M-pyrifera_M_contig87094:520..837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87094.20250.1 ID=mRNA_M-pyrifera_M_contig87094.20250.1|Name=mRNA_M-pyrifera_M_contig87094.20250.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig87094:520..837+ (Macrocystis pyrifera P11B4 male)
GCAGAGCTGCGCATCAAAACAAATCATGTTCTGGAAATCTTGACAGTGTT CCCTGAGGCAGGGTTTGCGCGAGAAGAAGCTATGGTAATTCTCTTCTCTC GAATGAAACTTGTCGGAGACTTTTGGCCCAAAGTCCTCCCACTCCTCACA GATGAAGAAAACCGCTATCGTGTCTGTCGAAGGTTGGGATGGCTCAACGT GTTCAACCCACAAGCCCCTGACACAAGCTATGACCTGGATCTTGCAATCC CAGACGAGCGCCGTCTTGCAGAAGTCCTTGTTGTGCTCGCTATCGCTGAA CCAGGGGAAAACTTTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87094:520..837+

>mRNA_M-pyrifera_M_contig87094.20250.1 ID=mRNA_M-pyrifera_M_contig87094.20250.1|Name=mRNA_M-pyrifera_M_contig87094.20250.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig87094:520..837+ (Macrocystis pyrifera P11B4 male)
GCAGAGCTGCGCATCAAAACAAATCATGTTCTGGAAATCTTGACAGTGTT
CCCTGAGGCAGGGTTTGCGCGAGAAGAAGCTATGGTAATTCTCTTCTCTC
GAATGAAACTTGTCGGAGACTTTTGGCCCAAAGTCCTCCCACTCCTCACA
GATGAAGAAAACCGCTATCGTGTCTGTCGAAGGTTGGGATGGCTCAACGT
GTTCAACCCACAAGCCCCTGACACAAGCTATGACCTGGATCTTGCAATCC
CAGACGAGCGCCGTCTTGCAGAAGTCCTTGTTGTGCTCGCTATCGCTGAA
CCAGGGGAAAACTTTAAGGCAGAGCTGCGCATCAAAACAAATCATGTTCT
GGAAATCTTGACAGTGTTCCCTGAGGCAGGGTTTGCGCGAGAAGAAGCTA
TGGTAATTCTCTTCTCTCGAATGAAACTTGTCGGAGACTTTTGGCCCAAA
GTCCTCCCACTCCTCACAGATGAAGAAAACCGCTATCGTGTCTGTCGAAG
GTTGGGATGGCTCAACGTGTTCAACCCACAAGCCCCTGACACAAGCTATG
ACCTGGATCTTGCAATCCCAGACGAGCGCCGTCTTGCAGAAGTCCTTGTT
GTGCTCGCTATCGCTGAACCAGGGGAAAACTTTAAG
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