mRNA_M-pyrifera_M_contig87070.20246.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87070.20246.1
Unique NamemRNA_M-pyrifera_M_contig87070.20246.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87070.20246.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.270e-11
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   10 PGFVVHAEAALRWLGVEGLTPEVLRRAKRGLREEGV 117
            PGFVVHAE   +W+GVEGLTPEVLRRAKRGLREE V
Sbjct:  238 PGFVVHAEEVFKWMGVEGLTPEVLRRAKRGLREEAV 273
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87070.20246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE2.270e-1183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87070contigM-pyrifera_M_contig87070:615..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004250.1
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.168795-CDS-M-pyrifera_M_contig87070:614..7311622816780.168795-CDS-M-pyrifera_M_contig87070:614..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87070 615..731 -
1692278174.218191-CDS-M-pyrifera_M_contig87070:614..7311692278174.218191-CDS-M-pyrifera_M_contig87070:614..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87070 615..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87070.20246.1prot_M-pyrifera_M_contig87070.20246.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87070 615..731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87070.20246.1

>prot_M-pyrifera_M_contig87070.20246.1 ID=prot_M-pyrifera_M_contig87070.20246.1|Name=mRNA_M-pyrifera_M_contig87070.20246.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
PQPPGFVVHAEAALRWLGVEGLTPEVLRRAKRGLREEGV
back to top

mRNA from alignment at M-pyrifera_M_contig87070:615..731-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87070.20246.1 ID=mRNA_M-pyrifera_M_contig87070.20246.1|Name=mRNA_M-pyrifera_M_contig87070.20246.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig87070:615..731- (Macrocystis pyrifera P11B4 male)
CCGCAACCCCCCGGGTTTGTGGTACATGCGGAAGCGGCGCTTCGATGGCT
GGGGGTGGAGGGGCTGACACCTGAAGTGCTGAGGAGGGCCAAGCGGGGAC
TGCGAGAAGAAGGAGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87070:615..731-

>mRNA_M-pyrifera_M_contig87070.20246.1 ID=mRNA_M-pyrifera_M_contig87070.20246.1|Name=mRNA_M-pyrifera_M_contig87070.20246.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig87070:615..731- (Macrocystis pyrifera P11B4 male)
CCGCAACCCCCCGGGTTTGTGGTACATGCGGAAGCGGCGCTTCGATGGCT
GGGGGTGGAGGGGCTGACACCTGAAGTGCTGAGGAGGGCCAAGCGGGGAC
TGCGAGAAGAAGGAGTGCCGCAACCCCCCGGGTTTGTGGTACATGCGGAA
GCGGCGCTTCGATGGCTGGGGGTGGAGGGGCTGACACCTGAAGTGCTGAG
GAGGGCCAAGCGGGGACTGCGAGAAGAAGGAGTG
back to top