mRNA_M-pyrifera_M_contig87041.20240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87041.20240.1
Unique NamemRNA_M-pyrifera_M_contig87041.20240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87041.20240.1 vs. uniprot
Match: A0A061QZZ9_9CHLO (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZZ9_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 6.930e-5
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:    1 WVVDFSGYGLVHATNTSLGTRLANATSTRFPERLSGLILVDAPYIFQAFLAVCRALLDATTMNKV 195
            WV+DF G+G+    N  +     + TST +PERLS +++V AP +F    ++ R ++   T  K+
Sbjct:   71 WVMDFHGFGMADC-NPKIAKIFLSLTSTHYPERLSNIVVVGAPALFNGLWSMLRPMVPDVTKEKI 134
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BLAST of mRNA_M-pyrifera_M_contig87041.20240.1 vs. uniprot
Match: A0A061SFM8_9CHLO (CRAL-TRIO domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SFM8_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 7.960e-5
Identity = 29/99 (29.29%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:    1 WVVDFSGYGLVHATNTSLGTRLANATSTRFPERLSGLILVDAPYIFQAFLAVCRALLDATTMNKVVAV-----SK---SELQGKLESTMPADMAEYIDA 273
            WV+DF G+G+    N  +     + TST +PERLS +++V AP +F    ++ R ++   T  K+  V     SK   S+++  L+     ++ E++ A
Sbjct:  136 WVMDFHGFGMADC-NPKIAKIFLSLTSTHYPERLSNIVVVGAPALFNGLWSMLRPMVPDVTKEKIRFVPYDAESKTRGSQMRAALKDIFSEELLEWLIA 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87041.20240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A061QZZ9_9CHLO6.930e-533.85CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
A0A061SFM8_9CHLO7.960e-529.29CRAL-TRIO domain-containing protein n=1 Tax=Tetras... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87041contigM-pyrifera_M_contig87041:84..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.8241837-CDS-M-pyrifera_M_contig87041:83..2431622816779.8241837-CDS-M-pyrifera_M_contig87041:83..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87041 84..243 -
1692278174.0017977-CDS-M-pyrifera_M_contig87041:83..2431692278174.0017977-CDS-M-pyrifera_M_contig87041:83..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87041 84..243 -
1622816779.8359106-CDS-M-pyrifera_M_contig87041:376..5371622816779.8359106-CDS-M-pyrifera_M_contig87041:376..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87041 377..537 -
1692278174.0129619-CDS-M-pyrifera_M_contig87041:376..5371692278174.0129619-CDS-M-pyrifera_M_contig87041:376..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87041 377..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87041.20240.1prot_M-pyrifera_M_contig87041.20240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87041 84..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87041.20240.1

>prot_M-pyrifera_M_contig87041.20240.1 ID=prot_M-pyrifera_M_contig87041.20240.1|Name=mRNA_M-pyrifera_M_contig87041.20240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
WVVDFSGYGLVHATNTSLGTRLANATSTRFPERLSGLILVDAPYIFQAFL
AVCRALLDATTMNKVVAVSKSELQGKLESTMPADMAEYIDAMCGAEPAEP
GSVPPIP
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mRNA from alignment at M-pyrifera_M_contig87041:84..537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87041.20240.1 ID=mRNA_M-pyrifera_M_contig87041.20240.1|Name=mRNA_M-pyrifera_M_contig87041.20240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=454bp|location=Sequence derived from alignment at M-pyrifera_M_contig87041:84..537- (Macrocystis pyrifera P11B4 male)
TGGGTCGTGGATTTCTCAGGCTACGGACTCGTCCATGCAACCAATACTTC
TCTCGGCACCCGTCTTGCCAATGCAACCTCCACCCGGTTTCCCGAACGGC
TTTCTGGACTCATTTTGGTGGACGCGCCGTACATCTTCCAAGCGTTCCTC
GCAGTATGCAGGTAAGAGGTGTTGTAGTTTTTGGTGTTGTTGTTGGTTTT
TTTGAGCTTGTACCAGAGAGAATACGCTCTCCAAGTGTTGTGGACCAAGC
CTAGAGTTCCACTTCTTCCTTCCTTTCCACTTTTTTCTTTCCAGGGCGTT
GTTGGATGCCACGACAATGAACAAGGTAGTTGCAGTTTCCAAGAGTGAGT
TGCAAGGTAAGCTGGAATCAACTATGCCTGCGGACATGGCAGAGTACATT
GATGCAATGTGTGGCGCGGAACCAGCAGAACCTGGCTCTGTGCCTCCAAT
TCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87041:84..537-

>mRNA_M-pyrifera_M_contig87041.20240.1 ID=mRNA_M-pyrifera_M_contig87041.20240.1|Name=mRNA_M-pyrifera_M_contig87041.20240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig87041:84..537- (Macrocystis pyrifera P11B4 male)
TGGGTCGTGGATTTCTCAGGCTACGGACTCGTCCATGCAACCAATACTTC
TCTCGGCACCCGTCTTGCCAATGCAACCTCCACCCGGTTTCCCGAACGGC
TTTCTGGACTCATTTTGGTGGACGCGCCGTACATCTTCCAAGCGTTCCTC
GCAGTATGCAGTGGGTCGTGGATTTCTCAGGCTACGGACTCGTCCATGCA
ACCAATACTTCTCTCGGCACCCGTCTTGCCAATGCAACCTCCACCCGGTT
TCCCGAACGGCTTTCTGGACTCATTTTGGTGGACGCGCCGTACATCTTCC
AAGCGTTCCTCGCAGTATGCAGGGCGTTGTTGGATGCCACGACAATGAAC
AAGGTAGTTGCAGTTTCCAAGAGTGAGTTGCAAGGTAAGCTGGAATCAAC
TATGCCTGCGGACATGGCAGAGTACATTGATGCAATGTGTGGCGCGGAAC
CAGCAGAACCTGGCTCTGTGCCTCCAATTCCCGGCGTTGTTGGATGCCAC
GACAATGAACAAGGTAGTTGCAGTTTCCAAGAGTGAGTTGCAAGGTAAGC
TGGAATCAACTATGCCTGCGGACATGGCAGAGTACATTGATGCAATGTGT
GGCGCGGAACCAGCAGAACCTGGCTCTGTGCCTCCAATTCCC
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