mRNA_M-pyrifera_M_contig8702.20232.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8702.20232.1
Unique NamemRNA_M-pyrifera_M_contig8702.20232.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8702.20232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8702contigM-pyrifera_M_contig8702:1559..1992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8702.20232.1prot_M-pyrifera_M_contig8702.20232.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8702 1597..1941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.4974086-UTR-M-pyrifera_M_contig8702:1558..15961622816779.4974086-UTR-M-pyrifera_M_contig8702:1558..1596Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8702 1559..1596 +
1692278173.8207998-UTR-M-pyrifera_M_contig8702:1558..15961692278173.8207998-UTR-M-pyrifera_M_contig8702:1558..1596Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8702 1559..1596 +
1622816779.5234203-UTR-M-pyrifera_M_contig8702:1941..19921622816779.5234203-UTR-M-pyrifera_M_contig8702:1941..1992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8702 1942..1992 +
1692278173.8430643-UTR-M-pyrifera_M_contig8702:1941..19921692278173.8430643-UTR-M-pyrifera_M_contig8702:1941..1992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8702 1942..1992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.50923-CDS-M-pyrifera_M_contig8702:1596..19411622816779.50923-CDS-M-pyrifera_M_contig8702:1596..1941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8702 1597..1941 +
1692278173.8325696-CDS-M-pyrifera_M_contig8702:1596..19411692278173.8325696-CDS-M-pyrifera_M_contig8702:1596..1941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8702 1597..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8702.20232.1

>prot_M-pyrifera_M_contig8702.20232.1 ID=prot_M-pyrifera_M_contig8702.20232.1|Name=mRNA_M-pyrifera_M_contig8702.20232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MRARLCSSYFESNLSLSPGVTYARFPSDDPYRYTPIPRRISTADRHTSGL
SSGMCLPTLPPYSQHLGCRVREGTQFLPEHCNFRMSRFAILKLPWGSSPA
QLPAKSRRVQTTCI*
back to top

mRNA from alignment at M-pyrifera_M_contig8702:1559..1992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8702.20232.1 ID=mRNA_M-pyrifera_M_contig8702.20232.1|Name=mRNA_M-pyrifera_M_contig8702.20232.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=434bp|location=Sequence derived from alignment at M-pyrifera_M_contig8702:1559..1992+ (Macrocystis pyrifera P11B4 male)
CGCATGCTACTTTTTTTACCAACCTTCACCTTCGAAGTATGCGTGCCCGT CTTTGTTCAAGCTATTTCGAGTCCAATCTTTCACTCTCACCAGGCGTGAC TTACGCACGTTTTCCTTCCGACGATCCCTATCGATACACACCGATACCGC GACGGATATCGACAGCTGACAGACACACCAGCGGCCTGTCCAGCGGCATG TGCCTCCCTACTCTGCCTCCCTACTCTCAGCATCTAGGCTGCCGTGTGCG TGAAGGCACGCAATTCCTACCCGAGCACTGCAATTTCCGTATGTCACGAT TTGCAATATTGAAGTTACCTTGGGGTAGTTCACCGGCGCAACTACCAGCT AAAAGCCGACGCGTTCAAACGACGTGTATATGATGAAGCGAAACTGCCAC ATTCAAATACAGAAGCTCAAGATGTAAATCTCCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8702:1559..1992+

>mRNA_M-pyrifera_M_contig8702.20232.1 ID=mRNA_M-pyrifera_M_contig8702.20232.1|Name=mRNA_M-pyrifera_M_contig8702.20232.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig8702:1559..1992+ (Macrocystis pyrifera P11B4 male)
ATGCGTGCCCGTCTTTGTTCAAGCTATTTCGAGTCCAATCTTTCACTCTC
ACCAGGCGTGACTTACGCACGTTTTCCTTCCGACGATCCCTATCGATACA
CACCGATACCGCGACGGATATCGACAGCTGACAGACACACCAGCGGCCTG
TCCAGCGGCATGTGCCTCCCTACTCTGCCTCCCTACTCTCAGCATCTAGG
CTGCCGTGTGCGTGAAGGCACGCAATTCCTACCCGAGCACTGCAATTTCC
GTATGTCACGATTTGCAATATTGAAGTTACCTTGGGGTAGTTCACCGGCG
CAACTACCAGCTAAAAGCCGACGCGTTCAAACGACGTGTATATGAATGCG
TGCCCGTCTTTGTTCAAGCTATTTCGAGTCCAATCTTTCACTCTCACCAG
GCGTGACTTACGCACGTTTTCCTTCCGACGATCCCTATCGATACACACCG
ATACCGCGACGGATATCGACAGCTGACAGACACACCAGCGGCCTGTCCAG
CGGCATGTGCCTCCCTACTCTGCCTCCCTACTCTCAGCATCTAGGCTGCC
GTGTGCGTGAAGGCACGCAATTCCTACCCGAGCACTGCAATTTCCGTATG
TCACGATTTGCAATATTGAAGTTACCTTGGGGTAGTTCACCGGCGCAACT
ACCAGCTAAAAGCCGACGCGTTCAAACGACGTGTATATGA
back to top