mRNA_M-pyrifera_M_contig86985.20225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86985.20225.1
Unique NamemRNA_M-pyrifera_M_contig86985.20225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A5A8DV38_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DV38_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 2.210e-14
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   37 DRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            D  EL+EI+WE LE AR+IYE++S G+S  A  NR  L+ VL R+G+ +    K +D I D+ ++L++RKAL  P H D AD   LL  A
Sbjct:  134 DIEELLEISWECLEPARIIYEKYSAGDSPAAVANRSRLASVLCRLGQVQQLSGKAEDGIKDMLEALQIRKALPAPAHRDLADVNALLSNA 223          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A1W4XLY9_AGRPL (histone-binding protein N1/N2-like n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XLY9_AGRPL)

HSP 1 Score: 67.4 bits (163), Expect = 6.380e-11
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   34 DDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMAL 309
            D+ T+L  +AWE LE A++IYE+  E        ++ +L+  L  +GE  ME E FD AITD+++ LE++K +L       A+TY  LGMAL
Sbjct:  248 DEPTDLQ-VAWEVLELAKIIYEKRGES-------SKKDLAETLITLGEVSMESENFDSAITDIKQGLEIQKTILDNNSRKLAETYYKLGMAL 331          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: UPI00106C9E08 (protein HGV2-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C9E08)

HSP 1 Score: 66.6 bits (161), Expect = 1.220e-10
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   10 EDGGEVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            ED  E   D     +++AWE+LE AR+I++RH      N+K  +++L++    +GE  ME E+F DA+T+L K L ++K LL P     A+TY  LG+A
Sbjct:  232 EDDKETADDGPVSTIQLAWESLELARIIFKRH------NSKEMQLKLAQAHLLLGEIHMEQEQFTDAVTELTKCLNIQKNLLEPDDRLLAETYYNLGLA 324          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: J9K8C9_ACYPI (SHNi-TPR domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K8C9_ACYPI)

HSP 1 Score: 66.2 bits (160), Expect = 1.640e-10
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   22 EVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +VG DD  +L  IAWE LE A+VIY+     ES      +++L+ VL + GE  +EDEKF+ AI D+ ++LE+R+ LLP      A+T   LG+A
Sbjct:  292 DVGEDDVNDLQ-IAWEMLELAKVIYKNQDTEES------KLKLAEVLMKCGEVSIEDEKFETAIQDMTEALEIRRLLLPEDDRIIAETLFQLGIA 379          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: UPI000763B6B4 (protein HGV2-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI000763B6B4)

HSP 1 Score: 65.9 bits (159), Expect = 2.220e-10
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   22 EVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +VG DD  +L  IAWE L+ A+VIY+     ES      +++L+ VL + GE  +EDEKF+ AI D+ +SLE+R+ LLP      A+T   LG+A
Sbjct:  253 DVGEDDVNDLQ-IAWEMLDLAKVIYKNKDTEES------KLKLAEVLMKCGEVSIEDEKFETAIQDMTESLEIRRLLLPEDSRIIAETLFQLGIA 340          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: UPI000B92FE17 (protein HGV2-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B92FE17)

HSP 1 Score: 65.9 bits (159), Expect = 2.230e-10
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   22 EVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +VG DD  +L  IAWE L+ A+VIY+     ES      +++L+ VL + GE  +EDEKF+ AI D+ +SLE+R+ LLP      A+T   LG+A
Sbjct:  270 DVGEDDVNDLQ-IAWEMLDLAKVIYKNKDTEES------KLKLAEVLMKCGEVSIEDEKFETAIQDMTESLEIRRLLLPEDSRIIAETLFQLGIA 357          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A6G0UAI7_APHGL (SHNi-TPR domain-containing protein n=4 Tax=Aphidini TaxID=33387 RepID=A0A6G0UAI7_APHGL)

HSP 1 Score: 65.5 bits (158), Expect = 3.010e-10
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   22 EVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +VG D+  +L  IAWE LE A+VIY+     ES      +++L+ VL + GE  +EDEKF+ AI D+ +SLE+R+ LLP      A+T   LG+A
Sbjct:  238 DVGEDEVNDLQ-IAWEMLELAKVIYKNKDTEES------KLKLAEVLMKCGEVSIEDEKFETAIQDMTESLEIRRLLLPEDSRIIAETLFQLGIA 325          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A2H8TMS4_9HEMI (Histone-binding protein N1/N2 n=2 Tax=Melanaphis sacchari TaxID=742174 RepID=A0A2H8TMS4_9HEMI)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-9
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   52 MEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            ++IAWE L+ A+VIY+     ES      +++L+ VL + GE  +EDEKF+ AI D+ +SLE+R+ LLP      A+T   LG+A
Sbjct:  240 LQIAWEMLDLAKVIYKNQDTEES------KLKLAEVLMKCGEVSIEDEKFETAIQDMTESLEIRRLLLPEDSRIIAETLFQLGIA 318          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A7S3SA53_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SA53_9SPIT)

HSP 1 Score: 61.6 bits (148), Expect = 2.290e-9
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 DGGEDGG-----EVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +GG+DG      E    +  + +E+A+++LE AR+IYE+  + E        +EL+ VL  +GE  ME+E + +A+T+LEKSLEL++  LPP H   A  +  +  A
Sbjct:   57 EGGDDGADAEGEEEEAGEEADDLELAFQSLEMARLIYEQFPDKE--------LELADVLEYLGEVNMENEMWHEAVTELEKSLELKQRHLPPDHRQLAHLHYQIATA 155          
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Match: A0A2S2QQ14_9HEMI (Nuclear autoantigenic sperm protein n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QQ14_9HEMI)

HSP 1 Score: 61.6 bits (148), Expect = 6.810e-9
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   52 MEIAWETLETARVIYERHSEGESANAKLNRIELSRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLGMA 306
            +++AWE L+ A+VIY+     E+      +++L+ VL + GE  +EDEKF+ AI D+ +SLE+R+ LLP      A+T   LG+A
Sbjct:  252 LQLAWEMLDLAKVIYKNKDTEEA------KLKLAEVLMKCGEVSIEDEKFETAIQDMTESLEIRRLLLPEDSRILAETLFQLGIA 330          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86985.20225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DV38_CAFRO2.210e-1446.67Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A1W4XLY9_AGRPL6.380e-1141.30histone-binding protein N1/N2-like n=1 Tax=Agrilus... [more]
UPI00106C9E081.220e-1039.39protein HGV2-like isoform X1 n=2 Tax=Dendronephthy... [more]
J9K8C9_ACYPI1.640e-1043.16SHNi-TPR domain-containing protein n=1 Tax=Acyrtho... [more]
UPI000763B6B42.220e-1043.16protein HGV2-like n=1 Tax=Diuraphis noxia TaxID=14... [more]
UPI000B92FE172.230e-1043.16protein HGV2-like n=1 Tax=Myzus persicae TaxID=131... [more]
A0A6G0UAI7_APHGL3.010e-1043.16SHNi-TPR domain-containing protein n=4 Tax=Aphidin... [more]
A0A2H8TMS4_9HEMI1.430e-942.35Histone-binding protein N1/N2 n=2 Tax=Melanaphis s... [more]
A0A7S3SA53_9SPIT2.290e-936.45Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2S2QQ14_9HEMI6.810e-940.00Nuclear autoantigenic sperm protein n=1 Tax=Sipha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86985contigM-pyrifera_M_contig86985:519..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.3
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog7029.ACYPI009173-PA
KEGG koko:K11291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA replication-dependent nucleosome assembly
EggNOG OGs39SU9@33154,3BCZB@33208,3CX4Z@33213,3EBBG@33342,3SM4R@50557,41YV1@6656,KOG4563@1,KOG4563@2759
COG Functional cat.BD
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.2120194-CDS-M-pyrifera_M_contig86985:518..8271622816779.2120194-CDS-M-pyrifera_M_contig86985:518..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86985 519..827 -
1692278173.6580875-CDS-M-pyrifera_M_contig86985:518..8271692278173.6580875-CDS-M-pyrifera_M_contig86985:518..827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86985 519..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86985.20225.1prot_M-pyrifera_M_contig86985.20225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86985 519..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86985.20225.1

>prot_M-pyrifera_M_contig86985.20225.1 ID=prot_M-pyrifera_M_contig86985.20225.1|Name=mRNA_M-pyrifera_M_contig86985.20225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
DGGEDGGEVGVDDRTELMEIAWETLETARVIYERHSEGESANAKLNRIEL
SRVLNRIGEHEMEDEKFDDAITDLEKSLELRKALLPPGHNDRADTYNLLG
MAL
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mRNA from alignment at M-pyrifera_M_contig86985:519..827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86985.20225.1 ID=mRNA_M-pyrifera_M_contig86985.20225.1|Name=mRNA_M-pyrifera_M_contig86985.20225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig86985:519..827- (Macrocystis pyrifera P11B4 male)
GATGGAGGTGAAGATGGAGGAGAAGTTGGGGTGGATGATCGCACGGAATT GATGGAGATTGCGTGGGAAACGCTCGAGACTGCCCGAGTGATTTATGAGC GTCATTCTGAGGGTGAGAGTGCAAACGCGAAATTGAACAGGATTGAGCTG AGTCGTGTGTTGAATCGGATTGGAGAACACGAAATGGAGGACGAAAAGTT CGATGACGCAATCACCGACTTGGAAAAATCTCTCGAGCTGCGGAAGGCGC TCTTGCCTCCAGGGCACAATGACCGAGCAGACACGTACAATTTGCTCGGG ATGGCGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86985:519..827-

>mRNA_M-pyrifera_M_contig86985.20225.1 ID=mRNA_M-pyrifera_M_contig86985.20225.1|Name=mRNA_M-pyrifera_M_contig86985.20225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig86985:519..827- (Macrocystis pyrifera P11B4 male)
GATGGAGGTGAAGATGGAGGAGAAGTTGGGGTGGATGATCGCACGGAATT
GATGGAGATTGCGTGGGAAACGCTCGAGACTGCCCGAGTGATTTATGAGC
GTCATTCTGAGGGTGAGAGTGCAAACGCGAAATTGAACAGGATTGAGCTG
AGTCGTGTGTTGAATCGGATTGGAGAACACGAAATGGAGGACGAAAAGTT
CGATGACGCAATCACCGACTTGGAAAAATCTCTCGAGCTGCGGAAGGCGC
TCTTGCCTCCAGGGCACAATGACCGAGCAGACACGTACAATTTGCTCGGG
ATGGCGTTGGATGGAGGTGAAGATGGAGGAGAAGTTGGGGTGGATGATCG
CACGGAATTGATGGAGATTGCGTGGGAAACGCTCGAGACTGCCCGAGTGA
TTTATGAGCGTCATTCTGAGGGTGAGAGTGCAAACGCGAAATTGAACAGG
ATTGAGCTGAGTCGTGTGTTGAATCGGATTGGAGAACACGAAATGGAGGA
CGAAAAGTTCGATGACGCAATCACCGACTTGGAAAAATCTCTCGAGCTGC
GGAAGGCGCTCTTGCCTCCAGGGCACAATGACCGAGCAGACACGTACAAT
TTGCTCGGGATGGCGTTG
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