mRNA_M-pyrifera_M_contig86964.20219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86964.20219.1
Unique NamemRNA_M-pyrifera_M_contig86964.20219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86964.20219.1 vs. uniprot
Match: UPI000A305F2D (glutathione S-transferase P-like n=1 Tax=Mus pahari TaxID=10093 RepID=UPI000A305F2D)

HSP 1 Score: 53.9 bits (128), Expect = 6.750e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   28 FAQLPVFSDDSVEHLCEQSAILRHLGRVHGLCGKTEQEQSLVDMM 162
            F Q+P F D  +  LC+ +AILRHLGR  GLCGK  QE +LVDM+
Sbjct:   32 FGQIPKFQDGELA-LCQSNAILRHLGRSFGLCGKDPQEAALVDMV 75
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BLAST of mRNA_M-pyrifera_M_contig86964.20219.1 vs. uniprot
Match: A0A1S3K4W3_LINUN (Glutathione transferase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K4W3_LINUN)

HSP 1 Score: 51.6 bits (122), Expect = 8.250e-6
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   13 SGAVPFAQLPVFSDDSVEHLCEQSAILRHLGRVHGLCGKTEQEQSLVDMMLSFSVTFQV 189
            S  + F  LP + D  V+ L + SAILR++GR +GLCGKTEQE++ VD++ + +  F++
Sbjct:   62 SLGLAFPNLPYYLDGDVK-LTQSSAILRYIGRKYGLCGKTEQEKTRVDLIQAQATDFKM 119
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BLAST of mRNA_M-pyrifera_M_contig86964.20219.1 vs. uniprot
Match: A0A6J2UMP2_CHACN (Glutathione S-transferase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UMP2_CHACN)

HSP 1 Score: 50.8 bits (120), Expect = 1.150e-5
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   28 FAQLPVFSDDSVEHLCEQSAILRHLGRVHGLCGKTEQEQSLVDMM 162
            F QLP+F D  +  L + +A+LRHLGR HGL GK + E +L+DMM
Sbjct:   54 FGQLPIFQDGDLV-LYQSNAMLRHLGRKHGLYGKNDSEAALIDMM 97
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BLAST of mRNA_M-pyrifera_M_contig86964.20219.1 vs. uniprot
Match: A0A6P7WFA7_9AMPH (Glutathione S-transferase n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7WFA7_9AMPH)

HSP 1 Score: 50.1 bits (118), Expect = 2.190e-5
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   28 FAQLPVFSDDSVEHLCEQSAILRHLGRVHGLCGKTEQEQSLVDMM 162
            F QLP F D   E L + +AILR+LGRVHGL GK  +E +L+DM+
Sbjct:   50 FGQLPAFRDGDFE-LYQSNAILRYLGRVHGLYGKNTKEAALIDMV 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86964.20219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000A305F2D6.750e-757.78glutathione S-transferase P-like n=1 Tax=Mus pahar... [more]
A0A1S3K4W3_LINUN8.250e-644.07Glutathione transferase n=1 Tax=Lingula unguis Tax... [more]
A0A6J2UMP2_CHACN1.150e-553.33Glutathione S-transferase n=1 Tax=Chanos chanos Ta... [more]
A0A6P7WFA7_9AMPH2.190e-555.56Glutathione S-transferase n=1 Tax=Microcaecilia un... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86964contigM-pyrifera_M_contig86964:508..744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.982412-CDS-M-pyrifera_M_contig86964:507..7441622816778.982412-CDS-M-pyrifera_M_contig86964:507..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86964 508..744 +
1692278173.5338547-CDS-M-pyrifera_M_contig86964:507..7441692278173.5338547-CDS-M-pyrifera_M_contig86964:507..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86964 508..744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86964.20219.1prot_M-pyrifera_M_contig86964.20219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86964 508..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86964.20219.1

>prot_M-pyrifera_M_contig86964.20219.1 ID=prot_M-pyrifera_M_contig86964.20219.1|Name=mRNA_M-pyrifera_M_contig86964.20219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RVLQSGAVPFAQLPVFSDDSVEHLCEQSAILRHLGRVHGLCGKTEQEQSL
VDMMLSFSVTFQVSAYRAPSMSEEERAEE
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mRNA from alignment at M-pyrifera_M_contig86964:508..744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86964.20219.1 ID=mRNA_M-pyrifera_M_contig86964.20219.1|Name=mRNA_M-pyrifera_M_contig86964.20219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig86964:508..744+ (Macrocystis pyrifera P11B4 male)
CGGGTTTTGCAGTCTGGTGCCGTTCCGTTCGCGCAACTACCCGTGTTTTC
GGACGATTCTGTGGAGCATTTGTGCGAACAGAGCGCGATTTTGCGGCATT
TGGGGCGGGTTCATGGTTTGTGTGGGAAAACGGAGCAAGAGCAGTCTCTG
GTGGACATGATGCTTTCGTTTTCCGTGACGTTTCAAGTGTCTGCGTATCG
AGCACCATCGATGAGTGAAGAAGAACGGGCTGAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86964:508..744+

>mRNA_M-pyrifera_M_contig86964.20219.1 ID=mRNA_M-pyrifera_M_contig86964.20219.1|Name=mRNA_M-pyrifera_M_contig86964.20219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig86964:508..744+ (Macrocystis pyrifera P11B4 male)
CGGGTTTTGCAGTCTGGTGCCGTTCCGTTCGCGCAACTACCCGTGTTTTC
GGACGATTCTGTGGAGCATTTGTGCGAACAGAGCGCGATTTTGCGGCATT
TGGGGCGGGTTCATGGTTTGTGTGGGAAAACGGAGCAAGAGCAGTCTCTG
GTGGACATGATGCTTTCGTTTTCCGTGACGTTTCAAGTGTCTGCGTATCG
AGCACCATCGATGAGTGAAGAAGAACGGGCTGAAGAGCGGGTTTTGCAGT
CTGGTGCCGTTCCGTTCGCGCAACTACCCGTGTTTTCGGACGATTCTGTG
GAGCATTTGTGCGAACAGAGCGCGATTTTGCGGCATTTGGGGCGGGTTCA
TGGTTTGTGTGGGAAAACGGAGCAAGAGCAGTCTCTGGTGGACATGATGC
TTTCGTTTTCCGTGACGTTTCAAGTGTCTGCGTATCGAGCACCATCGATG
AGTGAAGAAGAACGGGCTGAAGAG
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