mRNA_M-pyrifera_M_contig86955.20217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86955.20217.1
Unique NamemRNA_M-pyrifera_M_contig86955.20217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A2D8CCY8_9BACT (Phytoene desaturase n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CCY8_9BACT)

HSP 1 Score: 334 bits (856), Expect = 2.280e-110
Identity = 162/217 (74.65%), Postives = 187/217 (86.18%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDATET+  L+P+  IS  +K K E+IEPSCSG+VLLLG+D KYE LVHHNIFFS+DYE EF+QIF++KVMPDDPTIYIANTS+S+  HAPE  SNLF+L+NAPYLSD YDWN     YG+KII+ LE RGL+ L NHIK++K ITPKDFY+KYLSNKGSIYGTSSNN+FSAFLRPRNKSR+I  LYFVGGSTHPGGGIPLVVQSA NAV LI+R+E
Sbjct:  274 SDATETLSHLIPDGNISTKRKQKAETIEPSCSGYVLLLGVDKKYEQLVHHNIFFSEDYEREFKQIFQEKVMPDDPTIYIANTSYSDSKHAPECHSNLFILVNAPYLSDHYDWNSNDQKYGDKIIQALEERGLNELSNHIKVRKHITPKDFYEKYLSNKGSIYGTSSNNKFSAFLRPRNKSREIDKLYFVGGSTHPGGGIPLVVQSAFNAVNLIDRFE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A1B6Y6U1_9BACT (Phytoene desaturase n=6 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y6U1_9BACT)

HSP 1 Score: 330 bits (846), Expect = 6.540e-109
Identity = 160/217 (73.73%), Postives = 189/217 (87.10%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDA+ETIL L+ E  IS  +K K + +EPSCSGFV+LLGID KYE L+HHNIFFS DYE EF+QIFE K+MPDDPTIYIANTSF++  HAPE+GSNLFVL+NAPYLSD YDW+  +  YG+K+IRELE RGL++L  HIK +  ITPK+FY+KYLSNKGSIYGTSSN++FSAFLRPRNKSR+I+GLYF GGSTHPGGGIPLV+QSA+NAVELIER+E
Sbjct:  274 SDASETILNLIDEFSISAKRKEKQKELEPSCSGFVMLLGIDKKYEQLIHHNIFFSADYELEFKQIFENKIMPDDPTIYIANTSFTDKDHAPEDGSNLFVLVNAPYLSDSYDWSDIN--YGDKVIRELENRGLADLSQHIKFRSEITPKNFYEKYLSNKGSIYGTSSNDKFSAFLRPRNKSREIEGLYFTGGSTHPGGGIPLVIQSAVNAVELIERFE 488          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A2D9FT94_9BACT (Phytoene desaturase n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FT94_9BACT)

HSP 1 Score: 325 bits (832), Expect = 9.300e-107
Identity = 155/217 (71.43%), Postives = 180/217 (82.95%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SD TETI +LLP+  I   +K + ESIEPSCSGFVL+LGID KYEHL HHNIFFS+DY+ EF QIF +KVMP+DPTIY+ANTS S+ SHAPE GSNLF+L+NAPYLSD+YDW      YG+ II ELE RGL NL  HI+ ++ ITP+DFY+KY SNKGSIYGTSSN++FSAF+RPRNKSR I+GLYF GGSTHPGGGIPLV+QSA NA  LIERYE
Sbjct:  274 SDVTETITQLLPDEAIPTWRKQQAESIEPSCSGFVLMLGIDRKYEHLSHHNIFFSEDYKTEFRQIFREKVMPEDPTIYVANTSHSDHSHAPEGGSNLFILVNAPYLSDQYDWETNKKAYGDNIITELEKRGLENLSAHIQFRENITPEDFYEKYRSNKGSIYGTSSNSKFSAFIRPRNKSRNIEGLYFTGGSTHPGGGIPLVIQSAFNAANLIERYE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A521F0G5_9BACT (Phytoene desaturase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521F0G5_9BACT)

HSP 1 Score: 321 bits (822), Expect = 3.190e-105
Identity = 154/217 (70.97%), Postives = 184/217 (84.79%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDATETI++LLP       KK K + IEPSCSGFVL+LGID  YE L HHNIFF++DY+ EF+QIF +KVMPDDPTIY+ANTSFS+P HAP+ GSNLF+L+NAPYLS+ Y+W++    YG+K+IR LE RGL NL +HI+ +K+ITP DFY+KY SNKGSIYGTSSNN+FSAF+RPRNKSR I GLYFVGGSTHPGGGIPLVVQSA NA++LIER+E
Sbjct:  274 SDATETIVQLLPACCTPSRKKEKAKDIEPSCSGFVLMLGIDKSYEQLRHHNIFFTEDYKQEFQQIFRKKVMPDDPTIYVANTSFSDPDHAPDGGSNLFILVNAPYLSENYNWSENDKEYGDKVIRCLEKRGLENLSDHIQFRKSITPVDFYEKYRSNKGSIYGTSSNNKFSAFVRPRNKSRDIDGLYFVGGSTHPGGGIPLVVQSAFNALKLIERHE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: UPI000CD8C445 (phytoene desaturase family protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD8C445)

HSP 1 Score: 320 bits (821), Expect = 4.380e-105
Identity = 154/217 (70.97%), Postives = 184/217 (84.79%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDATETI  L+ ++ I  +KK K ESIEPSCSG+VLLLG+D  YE LVHHNIFFS++YE+EFEQIF+ KVMPDDP+IY+ANTS+S+P+HAP+ GSNLF+L+NAPYL++ YDW+K S  YG+KII+ L+ RGL +L NHI  +  ITP DF +KYLSNKGSIYGTSSNN FSAFLRPRNKSR I+ LY VGGSTHPGGGIPLV+QSA NA+ LIERYE
Sbjct:  274 SDATETITNLVSDHSIKPSKKIKAESIEPSCSGYVLLLGLDKTYEQLVHHNIFFSENYEYEFEQIFKDKVMPDDPSIYVANTSYSDPTHAPDGGSNLFILVNAPYLNEHYDWDKNSTSYGDKIIKALQKRGLDSLSNHIVYRSQITPVDFSEKYLSNKGSIYGTSSNNLFSAFLRPRNKSRDIEKLYMVGGSTHPGGGIPLVIQSAFNALTLIERYE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A3D1GDR0_9BACT (Phytoene desaturase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GDR0_9BACT)

HSP 1 Score: 315 bits (808), Expect = 3.670e-103
Identity = 151/217 (69.59%), Postives = 179/217 (82.49%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDATETI+ ++    +S  KK K  +IEPSCSGFVLLLG+DT Y  L HHNIFFS DY  EF+QIF++K MP+DPTIYIANTSFSN  HAPE GSNLF+LINAPYLS++ +W+ +  +Y +KIIR LE +GLS L +HIK QK ITP+DFYD Y SNKGSIYGTSSN++FSAF+RPRNKSR+   LYFVGGSTHPGGGIPLV+QSA NAV+LI+RYE
Sbjct:  273 SDATETIVYMMEPGKVSTAKKRKTAAIEPSCSGFVLLLGLDTSYSELKHHNIFFSNDYRLEFQQIFDEKTMPEDPTIYIANTSFSNAEHAPEGGSNLFILINAPYLSEQVNWDTEKDVYRKKIIRLLEDKGLSGLSSHIKFQKVITPRDFYDLYASNKGSIYGTSSNDKFSAFVRPRNKSRQFDNLYFVGGSTHPGGGIPLVIQSAFNAVKLIDRYE 489          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A3M8G4J7_9BACT (Phytoene desaturase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G4J7_9BACT)

HSP 1 Score: 312 bits (800), Expect = 6.090e-102
Identity = 154/217 (70.97%), Postives = 179/217 (82.49%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SD+TETIL L+ ++     KK K   IEPSCSGFVLLLGID +Y+ LVHHNIFFSK+YE EF QIF++KVMPDDPTIYIANTSFS+P+HAPE GSNLFVL+NAPYLS+ Y W      Y +K+I+ LE RGL  L + I +Q++ITP+DFY  YLSNKGSIYGTSSN++FSAF+RPRNKSR I  LYFVGGSTHPGGGIPLVVQSA NAVELI+RYE
Sbjct:  273 SDSTETILNLIGDDHFPKRKKEKASKIEPSCSGFVLLLGIDKQYDQLVHHNIFFSKNYEHEFHQIFKEKVMPDDPTIYIANTSFSDPAHAPEGGSNLFVLVNAPYLSEYYSWENHVQAYSKKVIQGLEQRGLDGLSDAIVVQESITPEDFYHLYLSNKGSIYGTSSNSKFSAFVRPRNKSRHIDKLYFVGGSTHPGGGIPLVVQSAFNAVELIDRYE 489          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: UPI00037CBF13 (phytoene desaturase family protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI00037CBF13)

HSP 1 Score: 311 bits (798), Expect = 1.250e-101
Identity = 152/217 (70.05%), Postives = 177/217 (81.57%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDATET + LL +  IS   K K  +IEPSCSG+VLLLGID  YE L HHNIFF+ DYE EF QIF++KVMP+DPTIYIANTS+S+PSHAP+  SNLF+L+NAPYLS  YDW      YG+KII ELE RGL  L +HI+ +K+ITP DFY+KY SNKGSIYGTSSN++FSAF+RPRNKS++ + LYF GGSTHPGGGIPLVVQSA NAVELIERYE
Sbjct:  274 SDATETKVHLLSDQAISQKAKEKARNIEPSCSGYVLLLGIDRSYEQLSHHNIFFTGDYETEFRQIFKEKVMPEDPTIYIANTSYSDPSHAPKGASNLFILVNAPYLSKHYDWELNEEKYGDKIITELEKRGLDELSDHIQFRKSITPVDFYEKYYSNKGSIYGTSSNSKFSAFVRPRNKSKEFEHLYFTGGSTHPGGGIPLVVQSAFNAVELIERYE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: UPI0011093695 (phytoene desaturase family protein n=1 Tax=Aliifodinibius saliphilus TaxID=1920650 RepID=UPI0011093695)

HSP 1 Score: 305 bits (781), Expect = 4.460e-99
Identity = 147/217 (67.74%), Postives = 172/217 (79.26%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            +DA ET L  LP + +   KK K+ S+EPSCSGFVLLLGID  Y  L HHNIFFS DY++EFEQIFE+KVMPDDPTIYIANTS+SNP  AP+ GSNLF+L+NAPYLSD YDW+ ++  Y  K+IR L+ RGL  L  HI   +TITPKDFY +Y SNKGSIYGTSSN++ +AFLRPRNKSR +KGLY VGGSTHPGGGIPLV  SA +A ELI R+E
Sbjct:  274 ADAAETYLNFLPNDELPFLKKKKMNSLEPSCSGFVLLLGIDKTYSALSHHNIFFSDDYKYEFEQIFEEKVMPDDPTIYIANTSYSNPKDAPKGGSNLFILVNAPYLSDNYDWDTETASYTRKVIRSLQKRGLKKLKEHITYSETITPKDFYKRYRSNKGSIYGTSSNSKMAAFLRPRNKSRSVKGLYLVGGSTHPGGGIPLVTLSAFHACELISRFE 490          
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Match: A0A6M1SMG2_9BACT (Phytoene desaturase n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SMG2_9BACT)

HSP 1 Score: 304 bits (778), Expect = 1.380e-98
Identity = 149/217 (68.66%), Postives = 178/217 (82.03%), Query Frame = 1
Query:    1 SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHHNIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVLINAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDFYDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIPLVVQSALNAVELIERYE 651
            SDA ET L+LL E+ +S++KK  IE++EPSCSGFVLLLGI+ +YE L HHNIFFS+DYE EF++IF +KVMP+DPTIYIANTS SNP HA E GSNLFVL+NAPYLS+ Y+W++ S  Y   II ELE RGL NL + I  Q  ITP DF +KY SN+GSIYGTSSN+RF+AFLRPRNKSR++KGLY  GGSTHPGGGIPLV+ SA +A+ELI RYE
Sbjct:  277 SDAAETYLELLGEDAVSESKKENIENLEPSCSGFVLLLGINRRYEQLRHHNIFFSEDYELEFQKIFREKVMPEDPTIYIANTSASNPEHAIEGGSNLFVLVNAPYLSENYNWDEHSEAYASFIISELEKRGLENLSSSIVHQSHITPADFREKYRSNRGSIYGTSSNSRFAAFLRPRNKSREVKGLYLTGGSTHPGGGIPLVILSAFHAMELIRRYE 493          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86955.20217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8CCY8_9BACT2.280e-11074.65Phytoene desaturase n=3 Tax=Balneolaceae TaxID=181... [more]
A0A1B6Y6U1_9BACT6.540e-10973.73Phytoene desaturase n=6 Tax=Bacteroidetes/Chlorobi... [more]
A0A2D9FT94_9BACT9.300e-10771.43Phytoene desaturase n=2 Tax=Balneolaceae TaxID=181... [more]
A0A521F0G5_9BACT3.190e-10570.97Phytoene desaturase n=1 Tax=Gracilimonas mengyeens... [more]
UPI000CD8C4454.380e-10570.97phytoene desaturase family protein n=1 Tax=Gracili... [more]
A0A3D1GDR0_9BACT3.670e-10369.59Phytoene desaturase n=1 Tax=Balneolaceae bacterium... [more]
A0A3M8G4J7_9BACT6.090e-10270.97Phytoene desaturase n=1 Tax=Balneola sp. TaxID=202... [more]
UPI00037CBF131.250e-10170.05phytoene desaturase family protein n=1 Tax=Gracili... [more]
UPI00110936954.460e-9967.74phytoene desaturase family protein n=1 Tax=Aliifod... [more]
A0A6M1SMG2_9BACT1.380e-9868.66Phytoene desaturase n=1 Tax=Balneolaceae bacterium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86955contigM-pyrifera_M_contig86955:3..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score315.1
Seed ortholog evalue2.6e-83
Seed eggNOG ortholog1121930.AQXG01000003_gene2605
Preferred namecrtD
KEGG rclassRC00317,RC01214,RC02080,RC02088,RC02396,RC02605
KEGG koko:K01854,ko:K09845,ko:K10027
KEGG ReactionR00505,R04787,R04798,R04800,R07517,R07520,R07523,R07534,R09009,R09691,R09692
KEGG Pathwayko00052,ko00520,ko00906,ko01100,ko01110,map00052,map00520,map00906,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flavin containing amine oxidoreductase
EggNOG OGs1IR1U@117747,4NG7V@976,COG1233@1,COG1233@2
EC1.3.99.26,1.3.99.27,1.3.99.28,1.3.99.29,1.3.99.31,5.4.99.9
COG Functional cat.Q
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size657
Cds size657
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.8869941-CDS-M-pyrifera_M_contig86955:2..6591622816778.8869941-CDS-M-pyrifera_M_contig86955:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86955 3..659 +
1692278173.4677079-CDS-M-pyrifera_M_contig86955:2..6591692278173.4677079-CDS-M-pyrifera_M_contig86955:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86955 3..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86955.20217.1prot_M-pyrifera_M_contig86955.20217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86955 3..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86955.20217.1

>prot_M-pyrifera_M_contig86955.20217.1 ID=prot_M-pyrifera_M_contig86955.20217.1|Name=mRNA_M-pyrifera_M_contig86955.20217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
SDATETILKLLPENPISDTKKSKIESIEPSCSGFVLLLGIDTKYEHLVHH
NIFFSKDYEFEFEQIFEQKVMPDDPTIYIANTSFSNPSHAPENGSNLFVL
INAPYLSDKYDWNKKSPIYGEKIIRELEIRGLSNLGNHIKMQKTITPKDF
YDKYLSNKGSIYGTSSNNRFSAFLRPRNKSRKIKGLYFVGGSTHPGGGIP
LVVQSALNAVELIERYEG*
back to top

mRNA from alignment at M-pyrifera_M_contig86955:3..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86955.20217.1 ID=mRNA_M-pyrifera_M_contig86955.20217.1|Name=mRNA_M-pyrifera_M_contig86955.20217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig86955:3..659+ (Macrocystis pyrifera P11B4 male)
AGTGATGCTACAGAAACCATACTTAAATTGCTTCCCGAAAATCCAATTTC TGATACTAAAAAATCAAAAATTGAAAGCATTGAACCCTCCTGTTCTGGGT TTGTACTTCTTTTGGGAATTGATACAAAGTATGAGCATCTGGTTCACCAT AATATATTTTTTAGTAAGGATTATGAGTTCGAATTTGAGCAAATCTTTGA ACAGAAAGTTATGCCAGATGATCCAACTATCTACATAGCGAACACCTCCT TTTCGAATCCATCACACGCCCCCGAAAATGGGTCGAATCTTTTTGTTTTA ATAAATGCACCTTATTTGTCTGATAAATATGACTGGAATAAAAAATCTCC GATTTACGGAGAAAAGATTATTAGAGAGCTCGAAATACGGGGATTATCAA ATTTAGGGAATCACATTAAAATGCAGAAAACCATTACCCCAAAAGATTTT TACGATAAATATTTATCCAATAAAGGAAGTATTTATGGAACTTCTTCAAA TAATAGATTTTCAGCGTTTTTACGGCCAAGAAATAAATCTAGAAAAATAA AAGGGCTTTACTTTGTTGGAGGTTCTACTCATCCAGGTGGAGGAATTCCT CTTGTGGTACAGTCCGCTCTTAATGCAGTAGAATTAATTGAGCGCTATGA AGGTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86955:3..659+

>mRNA_M-pyrifera_M_contig86955.20217.1 ID=mRNA_M-pyrifera_M_contig86955.20217.1|Name=mRNA_M-pyrifera_M_contig86955.20217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig86955:3..659+ (Macrocystis pyrifera P11B4 male)
AGTGATGCTACAGAAACCATACTTAAATTGCTTCCCGAAAATCCAATTTC
TGATACTAAAAAATCAAAAATTGAAAGCATTGAACCCTCCTGTTCTGGGT
TTGTACTTCTTTTGGGAATTGATACAAAGTATGAGCATCTGGTTCACCAT
AATATATTTTTTAGTAAGGATTATGAGTTCGAATTTGAGCAAATCTTTGA
ACAGAAAGTTATGCCAGATGATCCAACTATCTACATAGCGAACACCTCCT
TTTCGAATCCATCACACGCCCCCGAAAATGGGTCGAATCTTTTTGTTTTA
ATAAATGCACCTTATTTGTCTGATAAATATGACTGGAATAAAAAATCTCC
GATTTACGGAGAAAAGATTATTAGAGAGCTCGAAATACGGGGATTATCAA
ATTTAGGGAATCACATTAAAATGCAGAAAACCATTACCCCAAAAGATTTT
TACGATAAATATTTATCCAATAAAGGAAGTATTTATGGAACTTCTTCAAA
TAATAGATTTTCAGCGTTTTTACGGCCAAGAAATAAATCTAGAAAAATAA
AAGGGCTTTACTTTGTTGGAGGTTCTACTCATCCAGGTGGAGGAATTCCT
CTTGTGGTACAGTCCGCTCTTAATGCAGTAGAATTAATTGAGCGCTATGA
AGGTTAAAGTGATGCTACAGAAACCATACTTAAATTGCTTCCCGAAAATC
CAATTTCTGATACTAAAAAATCAAAAATTGAAAGCATTGAACCCTCCTGT
TCTGGGTTTGTACTTCTTTTGGGAATTGATACAAAGTATGAGCATCTGGT
TCACCATAATATATTTTTTAGTAAGGATTATGAGTTCGAATTTGAGCAAA
TCTTTGAACAGAAAGTTATGCCAGATGATCCAACTATCTACATAGCGAAC
ACCTCCTTTTCGAATCCATCACACGCCCCCGAAAATGGGTCGAATCTTTT
TGTTTTAATAAATGCACCTTATTTGTCTGATAAATATGACTGGAATAAAA
AATCTCCGATTTACGGAGAAAAGATTATTAGAGAGCTCGAAATACGGGGA
TTATCAAATTTAGGGAATCACATTAAAATGCAGAAAACCATTACCCCAAA
AGATTTTTACGATAAATATTTATCCAATAAAGGAAGTATTTATGGAACTT
CTTCAAATAATAGATTTTCAGCGTTTTTACGGCCAAGAAATAAATCTAGA
AAAATAAAAGGGCTTTACTTTGTTGGAGGTTCTACTCATCCAGGTGGAGG
AATTCCTCTTGTGGTACAGTCCGCTCTTAATGCAGTAGAATTAATTGAGC
GCTATGAAGGTTAA
back to top