mRNA_M-pyrifera_M_contig86921.20213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86921.20213.1
Unique NamemRNA_M-pyrifera_M_contig86921.20213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86921.20213.1 vs. uniprot
Match: A0A6H5JYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.360e-38
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = -2 
Query:  124 WEAGNRGWVRVRVR----WWTD-QSRDLRS--ETDGQNLVPDGVLFMVARLGHLKMLQWCKTNCPVVGLGFCVYCASAAGWSRVLPDAAGAGHVHLVLWCLDNGWGYSER 432
            W A + G  R   +    WWTD ++  L     T GQ LVPDGVLFMVARLGHL+MLQWC+TNCP+V    C+YCAS  GWSRV  DAAGAGHV LVLWCLDNGW YSER
Sbjct:  306 WTAASYGSFRTVAQLLTWWWTDDENHGLHGLDVTGGQQLVPDGVLFMVARLGHLQMLQWCRTNCPLVSRDLCLYCASPNGWSRVPADAAGAGHVDLVLWCLDNGWNYSER 415
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BLAST of mRNA_M-pyrifera_M_contig86921.20213.1 vs. uniprot
Match: A0A6H5K190_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K190_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.280e-18
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = -2 
Query:  409 GDAQFLFLGLVAWSWRRYLDGKENTVDSQVVTSVPRATEALDSGWEAGNRGW 564
            GDAQF+FLG VA SWR Y DGKE TVDSQVVTS PR TEALDSGWEAGN GW
Sbjct:   96 GDAQFIFLGPVARSWRAYFDGKEYTVDSQVVTS-PRTTEALDSGWEAGNSGW 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86921.20213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYY2_9PHAE1.360e-3863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K190_9PHAE5.280e-1882.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86921contigM-pyrifera_M_contig86921:2..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size628
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86921.20213.1prot_M-pyrifera_M_contig86921.20213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86921 296..610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.5080614-UTR-M-pyrifera_M_contig86921:1..2951622816778.5080614-UTR-M-pyrifera_M_contig86921:1..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86921 2..295 +
1692278173.1624613-UTR-M-pyrifera_M_contig86921:1..2951692278173.1624613-UTR-M-pyrifera_M_contig86921:1..295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86921 2..295 +
1622816778.5299358-UTR-M-pyrifera_M_contig86921:610..6291622816778.5299358-UTR-M-pyrifera_M_contig86921:610..629Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86921 611..629 +
1692278173.1934686-UTR-M-pyrifera_M_contig86921:610..6291692278173.1934686-UTR-M-pyrifera_M_contig86921:610..629Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86921 611..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.5184557-CDS-M-pyrifera_M_contig86921:295..6101622816778.5184557-CDS-M-pyrifera_M_contig86921:295..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86921 296..610 +
1692278173.181639-CDS-M-pyrifera_M_contig86921:295..6101692278173.181639-CDS-M-pyrifera_M_contig86921:295..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86921 296..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86921.20213.1

>prot_M-pyrifera_M_contig86921.20213.1 ID=prot_M-pyrifera_M_contig86921.20213.1|Name=mRNA_M-pyrifera_M_contig86921.20213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MSKSGYHEEDAVRDQILAVRFRAQITALVCPPPNPNPNPSSVTRFPPAVQ
CFRGAGDRRHHLGVHRVFFPIQIPPPRPRNQPQKKELRIACKGYDLRIHV
GTDE*
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mRNA from alignment at M-pyrifera_M_contig86921:2..629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86921.20213.1 ID=mRNA_M-pyrifera_M_contig86921.20213.1|Name=mRNA_M-pyrifera_M_contig86921.20213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=628bp|location=Sequence derived from alignment at M-pyrifera_M_contig86921:2..629+ (Macrocystis pyrifera P11B4 male)
CTCACAAAATATACCGTTCGAACAAGGGGTGCCCCGGCTCATCAAACGGC
GCAGCCTTTTTCACATGCACCCGGCATGAGAAACCCCTCTCTACTAATGC
CACGATGACATTCCAACGCCCCTCCTCTCAGAGTATCCCCACCCGTTATC
GAGGCACCACAACACCAAATGGACATGCCCGGCGCCAGCAGCGTCGGGGA
GCACGCGTGACCAACCGGCAGCCGAAGCGCAGTATACGCAAAAGCCAAGG
CCTACCACAGGGCAGTTCGTTTTGCACCACTGCAACATCTTCAAATGTCC
AAGTCTGGCTACCATGAAGAGGACGCCGTCCGGGACCAGATTCTGGCCGT
CCGTTTCAGAGCGCAGATCACGGCTTTGGTCTGTCCACCACCTAACCCTA
ACCCTAACCCATCCTCTGTTACCCGCTTCCCACCCGCTGTCCAGTGCTTC
CGTGGCGCGGGGGACCGACGTCACCACTTGGGAGTCCACCGTGTTTTCTT
TCCCATCCAAATACCTCCGCCACGACCACGCAACCAACCCCAGAAAAAGG
AACTGCGCATCGCCTGCAAAGGCTATGATCTCCGAATCCACGTCGGCACC
GATGAATAGTGGCGTCTTTTATCGGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86921:2..629+

>mRNA_M-pyrifera_M_contig86921.20213.1 ID=mRNA_M-pyrifera_M_contig86921.20213.1|Name=mRNA_M-pyrifera_M_contig86921.20213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig86921:2..629+ (Macrocystis pyrifera P11B4 male)
ATGTCCAAGTCTGGCTACCATGAAGAGGACGCCGTCCGGGACCAGATTCT
GGCCGTCCGTTTCAGAGCGCAGATCACGGCTTTGGTCTGTCCACCACCTA
ACCCTAACCCTAACCCATCCTCTGTTACCCGCTTCCCACCCGCTGTCCAG
TGCTTCCGTGGCGCGGGGGACCGACGTCACCACTTGGGAGTCCACCGTGT
TTTCTTTCCCATCCAAATACCTCCGCCACGACCACGCAACCAACCCCAGA
AAAAGGAACTGCGCATCGCCTGCAAAGGCTATGATCTCCGAATCCACGTC
GGCACCGATGAATAGATGTCCAAGTCTGGCTACCATGAAGAGGACGCCGT
CCGGGACCAGATTCTGGCCGTCCGTTTCAGAGCGCAGATCACGGCTTTGG
TCTGTCCACCACCTAACCCTAACCCTAACCCATCCTCTGTTACCCGCTTC
CCACCCGCTGTCCAGTGCTTCCGTGGCGCGGGGGACCGACGTCACCACTT
GGGAGTCCACCGTGTTTTCTTTCCCATCCAAATACCTCCGCCACGACCAC
GCAACCAACCCCAGAAAAAGGAACTGCGCATCGCCTGCAAAGGCTATGAT
CTCCGAATCCACGTCGGCACCGATGAATAG
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