mRNA_M-pyrifera_M_contig86840.20198.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86840.20198.1
Unique NamemRNA_M-pyrifera_M_contig86840.20198.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86840.20198.1 vs. uniprot
Match: A0A0D2WM03_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WM03_CAPO3)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-9
Identity = 42/137 (30.66%), Postives = 63/137 (45.99%), Query Frame = 1 
Query:    1 FNLEWSPGGDFLIASLESGVVVVLDTFHPDGLHRVCRFMAHENGTNVMSFDSEGRLFTGGVDGVARMWDFSKLCAARGDLESEE----------GGGITQFGLLREFVGHEDDVKNVCPLGSSILLTCSFDGTLRAW 381
            +NLE++PGG+ L+A+  +G  ++LD      + RV      E G NV+ F +E    TGG D   ++WD  K C +     +E              + +   L+E  GH   VKNV       L+T   D T+R W
Sbjct:  161 YNLEFTPGGECLVATASNGAFLLLDPRTYSEVGRVSNAHGGE-GVNVVRFLNERVFATGGDDFSVKLWDLRKCCRSTSSQPNEARFVQTATTPAASLMDRVTPLQELRGHHGWVKNVEIARDGRLVTAGMDNTIRLW 296
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86840.20198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2WM03_CAPO31.360e-930.66Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86840contigM-pyrifera_M_contig86840:145..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score64.7
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog192875.XP_004348655.1
Preferred nameDCAF10
KEGG koko:K11802
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGs38BFY@33154,KOG4155@1,KOG4155@2759
COG Functional cat.K
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.7973025-CDS-M-pyrifera_M_contig86840:144..5251622816777.7973025-CDS-M-pyrifera_M_contig86840:144..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86840 145..525 +
1692278172.686849-CDS-M-pyrifera_M_contig86840:144..5251692278172.686849-CDS-M-pyrifera_M_contig86840:144..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86840 145..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86840.20198.1prot_M-pyrifera_M_contig86840.20198.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86840 145..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86840.20198.1

>prot_M-pyrifera_M_contig86840.20198.1 ID=prot_M-pyrifera_M_contig86840.20198.1|Name=mRNA_M-pyrifera_M_contig86840.20198.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
FNLEWSPGGDFLIASLESGVVVVLDTFHPDGLHRVCRFMAHENGTNVMSF
DSEGRLFTGGVDGVARMWDFSKLCAARGDLESEEGGGITQFGLLREFVGH
EDDVKNVCPLGSSILLTCSFDGTLRAW
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mRNA from alignment at M-pyrifera_M_contig86840:145..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86840.20198.1 ID=mRNA_M-pyrifera_M_contig86840.20198.1|Name=mRNA_M-pyrifera_M_contig86840.20198.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig86840:145..525+ (Macrocystis pyrifera P11B4 male)
TTTAACCTAGAATGGTCTCCAGGAGGTGATTTCCTGATTGCATCGCTGGA
AAGTGGGGTTGTGGTTGTATTGGACACTTTTCACCCGGATGGTCTGCATC
GTGTATGTCGTTTTATGGCACACGAGAATGGTACAAACGTGATGAGCTTT
GACAGCGAAGGTAGGTTGTTTACTGGTGGAGTGGATGGTGTAGCACGTAT
GTGGGACTTTTCGAAGCTGTGTGCGGCACGAGGAGATTTAGAGAGTGAGG
AAGGGGGAGGGATAACACAATTTGGTTTGTTGCGGGAGTTTGTGGGGCAT
GAAGATGATGTCAAAAACGTCTGCCCGCTTGGATCCTCCATCCTTCTCAC
CTGTTCCTTCGATGGCACTCTACGTGCATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86840:145..525+

>mRNA_M-pyrifera_M_contig86840.20198.1 ID=mRNA_M-pyrifera_M_contig86840.20198.1|Name=mRNA_M-pyrifera_M_contig86840.20198.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig86840:145..525+ (Macrocystis pyrifera P11B4 male)
TTTAACCTAGAATGGTCTCCAGGAGGTGATTTCCTGATTGCATCGCTGGA
AAGTGGGGTTGTGGTTGTATTGGACACTTTTCACCCGGATGGTCTGCATC
GTGTATGTCGTTTTATGGCACACGAGAATGGTACAAACGTGATGAGCTTT
GACAGCGAAGGTAGGTTGTTTACTGGTGGAGTGGATGGTGTAGCACGTAT
GTGGGACTTTTCGAAGCTGTGTGCGGCACGAGGAGATTTAGAGAGTGAGG
AAGGGGGAGGGATAACACAATTTGGTTTGTTGCGGGAGTTTGTGGGGCAT
GAAGATGATGTCAAAAACGTCTGCCCGCTTGGATCCTCCATCCTTCTCAC
CTGTTCCTTCGATGGCACTCTACGTGCATGGTTTAACCTAGAATGGTCTC
CAGGAGGTGATTTCCTGATTGCATCGCTGGAAAGTGGGGTTGTGGTTGTA
TTGGACACTTTTCACCCGGATGGTCTGCATCGTGTATGTCGTTTTATGGC
ACACGAGAATGGTACAAACGTGATGAGCTTTGACAGCGAAGGTAGGTTGT
TTACTGGTGGAGTGGATGGTGTAGCACGTATGTGGGACTTTTCGAAGCTG
TGTGCGGCACGAGGAGATTTAGAGAGTGAGGAAGGGGGAGGGATAACACA
ATTTGGTTTGTTGCGGGAGTTTGTGGGGCATGAAGATGATGTCAAAAACG
TCTGCCCGCTTGGATCCTCCATCCTTCTCACCTGTTCCTTCGATGGCACT
CTACGTGCATGG
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