mRNA_M-pyrifera_M_contig86838.20197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86838.20197.1
Unique NamemRNA_M-pyrifera_M_contig86838.20197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A7S1CLA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLA7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.250e-35
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PRLVLSV  +D+LGR V  GYG++ VP  PGR TR +R FTP SS+  Q F AWLT NRPEF++P+F++QG+GREVTRVRS+G   V  +V+TRGMS HG+
Sbjct:   92 PRLVLSVFEVDALGRDVIRGYGALHVPTVPGRYTRFVRTFTPASSSLFQEFTAWLTGNRPEFFNPKFVSQGEGREVTRVRSTGVVQVDINVLTRGMSEHGY 192
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A812MZ63_9DINO (B9d1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MZ63_9DINO)

HSP 1 Score: 129 bits (325), Expect = 2.700e-34
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PR+VL V  LD LGR+V VGYGS+LVP  PGR  R +R F+PVS + +Q F+AWLTANRPEF  P F+A+ KGREVTRV+S+G   V  +V+TRGM+AHGF
Sbjct:   84 PRMVLEVKQLDMLGREVVVGYGSLLVPTLPGRYVRYVRTFSPVSGSVVQGFLAWLTANRPEFVRPDFVAENKGREVTRVQSTGVIRVQINVLTRGMAAHGF 184
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A1V9Y9X1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9X1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.160e-32
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PRLVLSV  +D+LGR V  GYGSVLVP   G+  + + LF P SS+ LQ+F+AWL+A+ PEF+DP+FIAQG+GRE+TRV S G ATV F++V  G   HG+
Sbjct:   85 PRLVLSVYGMDALGRDVIRGYGSVLVPVAAGKHVKRVPLFKPQSSSKLQSFIAWLSASPPEFFDPKFIAQGEGRELTRVSSQGVATVEFNIVLHGFQQHGY 185
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A7S0PF52_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PF52_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 4.670e-32
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PR+ ++V+++D+LGR V VGYGSVLVP      TR IRLF PVSST LQ F AW+TAN P +W P  + QG GREVTRV SSGS TV  +VVTRGM+ HG+
Sbjct:  101 PRIGVAVSAIDALGRPVIVGYGSVLVPLAGSGHTRRIRLFAPVSSTLLQRFFAWVTANPPRYWKPNIVTQGTGREVTRVASSGSVTVTLNVVTRGMTRHGY 201
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A5A8E813_CAFRO (14_3_3 domain-containing protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8E813_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 8.490e-32
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PR+ ++V+++D+LGR V VGYGSVLVP      TR IRLF PVSST LQ F AW+TAN P +W P  + QG GREVTRV SSGS TV  +VVTRGM+ HG+
Sbjct:  101 PRIGVAVSAIDALGRPVIVGYGSVLVPLAGSGHTRRIRLFAPVSSTLLQRFFAWVTANPPRYWKPNIVTQGTGREVTRVASSGSVTVTLNVVTRGMTRHGY 201
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A1W0A2A4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.560e-31
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            PRLV+SV  LD L R V  GYGSVL+P  PG+  + + LF P SS+ LQAF AWLTA  PEF+D RFIAQG+GRE+TRV S G  T+ F+VV  G   HG+
Sbjct:   85 PRLVISVYGLDMLRRDVIRGYGSVLIPTVPGKHFKQVALFKPQSSSKLQAFTAWLTATPPEFFDSRFIAQGQGRELTRVTSHGHITIDFNVVLHGFQNHGY 185
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A091SNR9_NESNO (B9 domain-containing protein 1 (Fragment) n=2 Tax=Nestor notabilis TaxID=176057 RepID=A0A091SNR9_NESNO)

HSP 1 Score: 114 bits (286), Expect = 2.000e-30
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            P++V+SV  LD  G  V  GYG+V VP TPGR TRTI +F P S++ LQ F +W T  RPEF DPR +AQG+GREVTRVRS G  T+ F+VVT+ M   G+
Sbjct:   39 PQIVVSVYGLDFFGHDVVRGYGAVHVPFTPGRHTRTIPMFVPESTSRLQQFTSWFTGRRPEFTDPRVVAQGEGREVTRVRSQGFVTISFNVVTKDMQKLGY 139
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A1U7RQD6_ALLSI (B9 domain-containing protein 1 n=3 Tax=Crocodylia TaxID=1294634 RepID=A0A1U7RQD6_ALLSI)

HSP 1 Score: 113 bits (282), Expect = 2.680e-29
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            P++VLSV   D  G  V  GYG+V VP TPGR  RTI +F P S++ LQ F +WLT  RPEF DPR +AQG+GREVTRVRS G  T+ F+VVT+ M   G+
Sbjct:   84 PQIVLSVYGPDIFGNDVVRGYGAVHVPFTPGRHERTIAMFVPESTSKLQKFTSWLTGRRPEFTDPRVVAQGEGREVTRVRSQGFVTISFNVVTKDMKKLGY 184
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A0Q3U656_AMAAE (B9 domain-containing protein 1-like protein n=1 Tax=Amazona aestiva TaxID=12930 RepID=A0A0Q3U656_AMAAE)

HSP 1 Score: 112 bits (280), Expect = 3.740e-29
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            P++V+SV   D  G  V  GYG+V VP TPGR TRTI +F P S++ LQ F +W T  RPEF DPR +AQG+GREVTRVRS G  T+ F+VVT+ M   G+
Sbjct:   70 PQIVVSVYGPDFFGHDVVRGYGAVHVPFTPGRHTRTIPMFVPESTSRLQQFTSWFTGRRPEFTDPRVVAQGEGREVTRVRSQGFVTISFNVVTKDMKKMGY 170
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BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Match: A0A8B9FX09_9PSIT (B9 domain containing 1 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9FX09_9PSIT)

HSP 1 Score: 112 bits (280), Expect = 4.150e-29
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQAFVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHGF 303
            P++V+SV   D  G  V  GYG+V VP TPGR TRTI +F P S++ LQ F +W T  RPEF DPR +AQG+GREVTRVRS G  T+ F+VVT+ M   G+
Sbjct:   74 PQIVVSVYGPDFFGHDVVRGYGAVHVPFTPGRHTRTIPMFVPESTSRLQQFTSWFTGRRPEFTDPRVVAQGEGREVTRVRSQGFVTISFNVVTKDMKKMGY 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86838.20197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CLA7_9STRA5.250e-3561.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812MZ63_9DINO2.700e-3462.38B9d1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1V9Y9X1_9STRA1.160e-3258.42Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S0PF52_CAFRO4.670e-3261.39Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8E813_CAFRO8.490e-3261.3914_3_3 domain-containing protein n=5 Tax=Sar TaxID... [more]
A0A1W0A2A4_9STRA7.560e-3158.42Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A091SNR9_NESNO2.000e-3056.44B9 domain-containing protein 1 (Fragment) n=2 Tax=... [more]
A0A1U7RQD6_ALLSI2.680e-2956.44B9 domain-containing protein 1 n=3 Tax=Crocodylia ... [more]
A0A0Q3U656_AMAAE3.740e-2955.45B9 domain-containing protein 1-like protein n=1 Ta... [more]
A0A8B9FX09_9PSIT4.150e-2955.45B9 domain containing 1 n=1 Tax=Amazona collaria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86838contigM-pyrifera_M_contig86838:208..841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6.3e-24
Seed eggNOG ortholog164328.Phyra71279
Preferred nameB9D1
KEGG koko:K16744
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001701,GO:0001944,GO:0002065,GO:0003674,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007423,GO:0007568,GO:0007610,GO:0008104,GO:0008150,GO:0008158,GO:0008340,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010259,GO:0015630,GO:0016020,GO:0016043,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030326,GO:0030537,GO:0030855,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035177,GO:0035869,GO:0036038,GO:0036064,GO:0038023,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060089,GO:0060173,GO:0060271,GO:0060429,GO:0060563,GO:0060756,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072358,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515
EggNOG free text desc.Ciliary basal body-associated, B9 protein
EggNOG OGs3QE3Q@4776,KOG4027@1,KOG4027@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.7500067-CDS-M-pyrifera_M_contig86838:207..2841622816777.7500067-CDS-M-pyrifera_M_contig86838:207..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86838 208..284 -
1692278172.6610491-CDS-M-pyrifera_M_contig86838:207..2841692278172.6610491-CDS-M-pyrifera_M_contig86838:207..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86838 208..284 -
1622816777.7641444-CDS-M-pyrifera_M_contig86838:615..8411622816777.7641444-CDS-M-pyrifera_M_contig86838:615..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86838 616..841 -
1692278172.6746724-CDS-M-pyrifera_M_contig86838:615..8411692278172.6746724-CDS-M-pyrifera_M_contig86838:615..841Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86838 616..841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86838.20197.1prot_M-pyrifera_M_contig86838.20197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86838 208..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86838.20197.1

>prot_M-pyrifera_M_contig86838.20197.1 ID=prot_M-pyrifera_M_contig86838.20197.1|Name=mRNA_M-pyrifera_M_contig86838.20197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
PRLVLSVNSLDSLGRQVTVGYGSVLVPQTPGRCTRTIRLFTPVSSTPLQA
FVAWLTANRPEFWDPRFIAQGKGREVTRVRSSGSATVVFDVVTRGMSAHG
F
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mRNA from alignment at M-pyrifera_M_contig86838:208..841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86838.20197.1 ID=mRNA_M-pyrifera_M_contig86838.20197.1|Name=mRNA_M-pyrifera_M_contig86838.20197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=634bp|location=Sequence derived from alignment at M-pyrifera_M_contig86838:208..841- (Macrocystis pyrifera P11B4 male)
CCTCGCTTGGTGCTGAGCGTGAATTCTCTCGACTCTCTGGGTCGGCAGGT
GACAGTGGGGTATGGGAGCGTGCTGGTGCCTCAGACCCCAGGGCGATGCA
CCAGAACCATTCGTCTCTTCACCCCCGTCTCCTCCACCCCTCTCCAAGCC
TTTGTGGCGTGGCTCACTGCAAATCGACCAGAATTCTGGGATCCTAGGTT
CATCGCACAAGGGAAAGGAAGAGAAGGTCAGTGGGTGATGGGAGGAGGGG
ATTTTTGAGTGTGGGGTGAGTGGTGTGATCGATTTCTGTCATGTTTACTC
CTTGTGCTTTTTTTGCTTCTTCTTCCTCCTCTTCTTCTTCATCTTCATCT
TCTTCATCTTCTTCATCCTTCTCTTCATCCTCTTCTTCCTCTTCTTCCTC
CTCCTCCTCCTCCTCCTTCTCCTCTTCTTCTCTTTCTCCCCTCCTTTTTG
ATGTATGATCGCTTGTCACAACAAGGACACTTTTCATCGACCCAACCCAC
CCATCCCTTCTTTTTATCTCCTCCAACCCACCCATTCCTCCTTTTTGCCT
CTTGCAGTGACTCGTGTTCGTTCCTCTGGGAGCGCAACTGTGGTGTTTGA
TGTGGTGACTCGAGGGATGAGTGCGCATGGGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86838:208..841-

>mRNA_M-pyrifera_M_contig86838.20197.1 ID=mRNA_M-pyrifera_M_contig86838.20197.1|Name=mRNA_M-pyrifera_M_contig86838.20197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig86838:208..841- (Macrocystis pyrifera P11B4 male)
CCTCGCTTGGTGCTGAGCGTGAATTCTCTCGACTCTCTGGGTCGGCAGGT
GACAGTGGGGTATGGGAGCGTGCTGGTGCCTCAGACCCCAGGGCGATGCA
CCAGAACCATTCGTCTCTTCACCCCCGTCTCCTCCACCCCTCTCCAAGCC
TTTGTGGCGTGGCTCACTGCAAATCGACCAGAATTCTGGGATCCTAGGTT
CATCGCACAAGGGAAAGGAAGAGAAGCCTCGCTTGGTGCTGAGCGTGAAT
TCTCTCGACTCTCTGGGTCGGCAGGTGACAGTGGGGTATGGGAGCGTGCT
GGTGCCTCAGACCCCAGGGCGATGCACCAGAACCATTCGTCTCTTCACCC
CCGTCTCCTCCACCCCTCTCCAAGCCTTTGTGGCGTGGCTCACTGCAAAT
CGACCAGAATTCTGGGATCCTAGGTTCATCGCACAAGGGAAAGGAAGAGA
AGTGACTCGTGTTCGTTCCTCTGGGAGCGCAACTGTGGTGTTTGATGTGG
TGACTCGAGGGATGAGTGCGCATGGGTTTTGACTCGTGTTCGTTCCTCTG
GGAGCGCAACTGTGGTGTTTGATGTGGTGACTCGAGGGATGAGTGCGCAT
GGGTTT
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