mRNA_M-pyrifera_M_contig86835.20194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86835.20194.1
Unique NamemRNA_M-pyrifera_M_contig86835.20194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A0L0D9F7_THETB (BolA domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9F7_THETB)

HSP 1 Score: 69.7 bits (169), Expect = 8.390e-14
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   16 ALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRKKGL 234
            A  P FL V D S  GCGQ  D++VVSEAF+GV +LDR + V+     EI+  HA ++K W P Q EK+K  L
Sbjct:   15 AFSPVFLDVQDVS-GGCGQSFDVIVVSEAFEGVALLDRHRMVNDAVADEIKAIHAFSLKTWTPAQYEKKKDKL 86          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: W4GQM8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GQM8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.410e-11
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   16 ALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
            A + TF+ V D+S DGCG    ++VVS AF+G G+L RQ+ V+ +   E+   HA+ MK W P Q E++K
Sbjct:   14 AFQATFVQVEDNS-DGCGNKFSVIVVSNAFEGQGLLQRQRAVNEVLKDEMATIHALQMKTWTPAQFEQKK 82          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A0M0JE80_9EUKA (Bola-like protein 2-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE80_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 4.830e-11
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 LLPHRALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRKKGLDKKVLEALE 261
            LL   +L P  + VVD+S DGCG   + +VVS AFDG+G+LDRQ+ V+ +    ++  HA +MK W P      K G+D +VL A++
Sbjct:   11 LLTGSSLVPEHVEVVDTS-DGCGSKFEAIVVSAAFDGMGLLDRQRAVNDVIAEPMKAIHAFSMKTWTP------KHGIDDQVLSAVD 90          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A0J8AXI6_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8AXI6_BETVV)

HSP 1 Score: 62.4 bits (150), Expect = 6.370e-11
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   13 RALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
            RAL P+ L V D S DGCG   +IVVVSE F G+ +L+R + V    G  + K HA+T+K W  DQ E +K
Sbjct:   13 RALDPSVLIVNDVS-DGCGAKFEIVVVSEKFQGIKLLERHRMVQGSLGDVMGKIHALTIKSWTADQWESKK 82          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A418B9T0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B9T0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.320e-11
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   16 ALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
            A + T++ V D+S DGCG    ++VVS AF+G G+L RQ+ V+ +   E+   HA+ MK W P Q E++K
Sbjct:   31 AFQATYVQVEDNS-DGCGNKFSVIVVSNAFEGQGLLQRQRAVNEVLRDEMASIHALQMKTWTPAQFEQKK 99          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: L1JG61_GUITC (Bola-like protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JG61_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 8.590e-11
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   19 LKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
            LK T + VVD S DGCG  +D++VVSE F G+ +LDRQ+ VH     E++  HA+TMK   P+Q E  K
Sbjct:   14 LKATVVEVVDLS-DGCGAKLDLLVVSEKFVGMSLLDRQRSVHEAIEEEMKTIHALTMKTKTPEQYEAMK 81          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A0G4FVB4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FVB4_9ALVE)

HSP 1 Score: 62.0 bits (149), Expect = 8.810e-11
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   13 RALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEK 219
             ALKP+ L V+D S  GCG     +VVSEAF+G  +L RQ+ V+    +E+ + HA TMKC+ P + EK
Sbjct:   13 EALKPSVLKVIDQS-GGCGAAFHAIVVSEAFEGQRLLQRQRMVNDAIKAEMAEIHAFTMKCYTPAEFEK 80          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A6G0WVJ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVJ8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.330e-10
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   13 RALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
             A   T++ V D+S DGCG    ++VVS AF+G G+L RQ+ V+ +   E+   HA+ MK W P Q E++K
Sbjct:   26 EAFNATYVQVEDNS-DGCGNKFSVIVVSAAFEGQGLLQRQRAVNEVLRDEMATIHALQMKTWTPAQFEQKK 95          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A2D4BJA7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJA7_PYTIN)

HSP 1 Score: 60.5 bits (145), Expect = 5.480e-10
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   19 LKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRKK 228
            L  TF+  VD S DGCGQ   ++VV + F+G+ +LDRQ+RV+     E+ + HA+ MK W   Q E++ K
Sbjct:   18 LGATFVEAVDLS-DGCGQKFSVIVVHDGFEGLSLLDRQRRVNECLKEEMTRIHALQMKTWTASQYEQKMK 86          
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Match: A0A0G4G061_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G061_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 5.830e-10
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   19 LKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTIAGSEIEKAHAVTMKCWVPDQLEKRK 225
            LKP  L V D S  GCG   D ++VS+AF+G  +LDRQ+ V+     E++  HA TMKC  P + EKRK
Sbjct:   22 LKPALLEVNDVS-GGCGASYDALIVSDAFEGKRLLDRQRLVNDALKEELKDIHAFTMKCVTPAEWEKRK 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86835.20194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0D9F7_THETB8.390e-1449.32BolA domain-containing protein n=1 Tax=Thecamonas ... [more]
W4GQM8_9STRA2.410e-1144.29Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A0M0JE80_9EUKA4.830e-1142.53Bola-like protein 2-like protein n=1 Tax=Chrysochr... [more]
A0A0J8AXI6_BETVV6.370e-1147.89Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A418B9T0_9STRA7.320e-1142.86Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
L1JG61_GUITC8.590e-1149.28Bola-like protein n=1 Tax=Guillardia theta (strain... [more]
A0A0G4FVB4_9ALVE8.810e-1146.38Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6G0WVJ8_9STRA1.330e-1042.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BJA7_PYTIN5.480e-1042.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0G4G061_VITBC5.830e-1047.83Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86835contigM-pyrifera_M_contig86835:548..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog529818.AMSG_04620T0
KEGG koko:K22075
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034395,GO:0034396,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG3348@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.6395297-CDS-M-pyrifera_M_contig86835:547..8081622816777.6395297-CDS-M-pyrifera_M_contig86835:547..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86835 548..808 -
1692278172.603403-CDS-M-pyrifera_M_contig86835:547..8081692278172.603403-CDS-M-pyrifera_M_contig86835:547..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86835 548..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86835.20194.1prot_M-pyrifera_M_contig86835.20194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86835 548..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86835.20194.1

>prot_M-pyrifera_M_contig86835.20194.1 ID=prot_M-pyrifera_M_contig86835.20194.1|Name=mRNA_M-pyrifera_M_contig86835.20194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
LLPHRALKPTFLYVVDSSEDGCGQFVDIVVVSEAFDGVGILDRQKRVHTI
AGSEIEKAHAVTMKCWVPDQLEKRKKGLDKKVLEALE
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mRNA from alignment at M-pyrifera_M_contig86835:548..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86835.20194.1 ID=mRNA_M-pyrifera_M_contig86835.20194.1|Name=mRNA_M-pyrifera_M_contig86835.20194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig86835:548..808- (Macrocystis pyrifera P11B4 male)
CTTCTCCCACACAGGGCATTGAAACCGACGTTTTTGTATGTGGTGGACTC TTCTGAGGATGGGTGTGGGCAGTTTGTAGACATTGTGGTGGTTTCTGAAG CATTTGATGGGGTTGGAATTTTGGATCGGCAAAAACGGGTGCACACCATT GCTGGGTCCGAGATTGAAAAGGCACATGCTGTTACGATGAAGTGTTGGGT TCCAGATCAGTTGGAAAAGCGCAAGAAAGGACTCGATAAGAAGGTGTTGG AAGCCTTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86835:548..808-

>mRNA_M-pyrifera_M_contig86835.20194.1 ID=mRNA_M-pyrifera_M_contig86835.20194.1|Name=mRNA_M-pyrifera_M_contig86835.20194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig86835:548..808- (Macrocystis pyrifera P11B4 male)
CTTCTCCCACACAGGGCATTGAAACCGACGTTTTTGTATGTGGTGGACTC
TTCTGAGGATGGGTGTGGGCAGTTTGTAGACATTGTGGTGGTTTCTGAAG
CATTTGATGGGGTTGGAATTTTGGATCGGCAAAAACGGGTGCACACCATT
GCTGGGTCCGAGATTGAAAAGGCACATGCTGTTACGATGAAGTGTTGGGT
TCCAGATCAGTTGGAAAAGCGCAAGAAAGGACTCGATAAGAAGGTGTTGG
AAGCCTTGGAACTTCTCCCACACAGGGCATTGAAACCGACGTTTTTGTAT
GTGGTGGACTCTTCTGAGGATGGGTGTGGGCAGTTTGTAGACATTGTGGT
GGTTTCTGAAGCATTTGATGGGGTTGGAATTTTGGATCGGCAAAAACGGG
TGCACACCATTGCTGGGTCCGAGATTGAAAAGGCACATGCTGTTACGATG
AAGTGTTGGGTTCCAGATCAGTTGGAAAAGCGCAAGAAAGGACTCGATAA
GAAGGTGTTGGAAGCCTTGGAA
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