mRNA_M-pyrifera_M_contig86819.20190.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86819.20190.1
Unique NamemRNA_M-pyrifera_M_contig86819.20190.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A7T4U1_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T4U1_NEMVE)

HSP 1 Score: 150 bits (379), Expect = 7.080e-43
Identity = 66/122 (54.10%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPG+PFLGNDFF+ +GD+F   A++NPD +SE+ +LR Y P+VSEE+L KL S+F ELR    +G++ YP+STRE+V++V+HL+A P E +ASV+ N FDFD    E+ D + EV ++HGIP
Sbjct:  140 RPGFPFLGNDFFSALGDIFSCHAVDNPDFKSEMAMLRQYGPSVSEEVLIKLVSAFGELRSRADQGLISYPYSTREVVSVVKHLQAFPDEGVASVVRNVFDFDTYHEEIRDVVIEVMHKHGIP 261          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A0D2U3W7_CAPO3 (VWFA domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U3W7_CAPO3)

HSP 1 Score: 158 bits (399), Expect = 2.370e-42
Identity = 75/125 (60.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIPFHV 375
            RPG+PFLGNDFFA +GD+F    +ENPD  SEL +LR YAP VSE++LR+LT++F +LR M+ EG L YP+STRELVNIVRHLE  P E I +V+ + FDFD  D EL  TL     RHGIP  V
Sbjct:  848 RPGFPFLGNDFFAALGDMFSCHVMENPDTPSELAMLRQYAPNVSEDVLRRLTAAFNDLRHMVDEGQLTYPYSTRELVNIVRHLEKYPDEGIGNVVRSVFDFDSYDPELRQTLVSTLQRHGIPVGV 972          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A015J9F0_RHIIW (VWFA domain-containing protein n=15 Tax=Rhizophagus TaxID=1129544 RepID=A0A015J9F0_RHIIW)

HSP 1 Score: 157 bits (396), Expect = 6.000e-42
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPG+PFLGNDF+ E+GDVF   A++NPD ESE+ LLR YAP +SE++L KLT++F +LRK++ EG++ YP+STRELVNIV+H++  P E I+ +L N FDFD  D +  D L E F +HGIP
Sbjct:  838 RPGFPFLGNDFYREIGDVFSCHAVDNPDSESEIFLLRKYAPDISEDLLLKLTAAFGDLRKLVDEGLISYPYSTRELVNIVKHMQQYPEEGISRILQNVFDFDQYDKDSKDLLIEAFQKHGIP 959          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A1X2GJY7_9FUNG (Uncharacterized protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GJY7_9FUNG)

HSP 1 Score: 157 bits (396), Expect = 6.010e-42
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPGYPFLGNDF+ E+GDVF   A++NPD +SE+ LLR Y P V E++LRKL+S+F +LRK+  EG++ YP+STRELVNIVRHL+  P E I+ +L N FDFD  D    + L E+F +HGIP
Sbjct:  904 RPGYPFLGNDFYREIGDVFSCHAVDNPDLDSEMYLLRKYGPDVPEDLLRKLSSAFTDLRKLTDEGLISYPYSTRELVNIVRHLQNYPAEGISKILQNVFDFDQYDSASKELLIEIFEKHGIP 1025          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A8H7S7Z7_9FUNG (VWFA domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7Z7_9FUNG)

HSP 1 Score: 157 bits (396), Expect = 6.010e-42
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPGYPFLGNDF+ E+GDVF   A++NPD+ SE+ LLR YAP V+E++L KL+S+F +LRK++ EG++ YP+STRELVNIV HL+  PGE I+ ++ N FDFD  D    + L E+F +HGIP
Sbjct:  912 RPGYPFLGNDFYREIGDVFSCHAVDNPDKASEMYLLRKYAPDVAEDMLEKLSSAFTDLRKLVDEGLISYPYSTRELVNIVLHLQNYPGEGISKIMQNVFDFDQYDQASKELLIEIFEKHGIP 1033          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: UPI000529D0EE (von Willebrand factor A domain-containing protein 8-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI000529D0EE)

HSP 1 Score: 145 bits (365), Expect = 7.200e-42
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPG+PFLGNDFF  +GD+F   A++NP  +SEL +LR Y P V E IL+KL ++F ELR +  +G++ YP+STRE+VNIV+HL+  P E +ASV+ N FDFD  + E+H+ L    ++HGIP
Sbjct:   37 RPGFPFLGNDFFGTLGDIFSCHAVDNPKPQSELAMLRQYGPDVPEPILQKLVAAFGELRSLADQGIINYPYSTREVVNIVKHLQKFPTEGLASVVRNVFDFDSYNNEMHEILISTLHKHGIP 158          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A163M3F4_ABSGL (VWFA domain-containing protein n=2 Tax=Absidia TaxID=4828 RepID=A0A163M3F4_ABSGL)

HSP 1 Score: 156 bits (395), Expect = 8.190e-42
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPGYPFLGNDF+ E+GDVF   A++NPD +SE+ LLR Y P V E++LRKL+S+F +LRK+  EG++ YP+STRELVNIVRHL+  P E I+ +L N FDFD  D    + L E+F +HGIP
Sbjct:  877 RPGYPFLGNDFYREIGDVFSCHAVDNPDMDSEMFLLRKYGPDVPEDLLRKLSSAFSDLRKLTDEGLISYPYSTRELVNIVRHLQDYPDEGISKILQNVFDFDQYDQASKELLIEIFEKHGIP 998          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A507BXM2_9FUNG (VWFA domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BXM2_9FUNG)

HSP 1 Score: 155 bits (393), Expect = 1.520e-41
Identity = 68/122 (55.74%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPG+PFLGNDFF E+GDVF    ++NPD ESEL LLR+YAP V E++LRKLT++F +LR+++ EG++ YP+STRELV++V+HL+  P E ++  L N FDFD  + E+ D L E  N++GIP
Sbjct:  929 RPGFPFLGNDFFREIGDVFACHCVDNPDTESELALLRAYAPDVQEDLLRKLTAAFNDLRRLVDEGLISYPYSTRELVSVVKHLQTYPKEGLSRALQNVFDFDQYESEIRDLLIETLNKNGIP 1050          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A1X2H4C4_SYNRA (AAA domain-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H4C4_SYNRA)

HSP 1 Score: 155 bits (392), Expect = 2.080e-41
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPGYPFLGNDF+ E+GDVF   A++NPD+ SE+ LLR Y P V+E++L KL+S+F +LRK++ EG++ YP+STRELVN+V HL+  PGE I+ ++ N FDFD  D    + L E+F +HGIP
Sbjct:  914 RPGYPFLGNDFYREIGDVFSCHAVDNPDKASEMYLLRKYGPDVAEDLLHKLSSAFTDLRKLVDEGLISYPYSTRELVNVVLHLQNYPGEGISKIMQNVFDFDQYDQASKELLIEIFEKHGIP 1035          
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Match: A0A1Y2G664_9FUNG (AAA domain-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2G664_9FUNG)

HSP 1 Score: 155 bits (391), Expect = 2.840e-41
Identity = 70/122 (57.38%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRKLTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFDFDVLDFELHDTLSEVFNRHGIP 366
            RPG+PFLGNDFF E+GDVF   A++NPD ESE+ LLR Y P V EE+L KLT++F++LR ++ EG+L YP+STRELVN+VRH++  P E I+ +L N FDFD  D +  + L E F +HGIP
Sbjct:  934 RPGFPFLGNDFFREVGDVFSCHAVDNPDAESEMFLLRKYGPDVPEELLLKLTAAFEDLRVLVDEGLLSYPYSTRELVNVVRHMQLYPEEGISRILQNVFDFDQYDADSKEMLIETFQKHGIP 1055          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86819.20190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A7T4U1_NEMVE7.080e-4354.10Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A0D2U3W7_CAPO32.370e-4260.00VWFA domain-containing protein n=2 Tax=Capsaspora ... [more]
A0A015J9F0_RHIIW6.000e-4257.38VWFA domain-containing protein n=15 Tax=Rhizophagu... [more]
A0A1X2GJY7_9FUNG6.010e-4258.20Uncharacterized protein n=1 Tax=Hesseltinella vesi... [more]
A0A8H7S7Z7_9FUNG6.010e-4257.38VWFA domain-containing protein n=1 Tax=Mucor circi... [more]
UPI000529D0EE7.200e-4252.46von Willebrand factor A domain-containing protein ... [more]
A0A163M3F4_ABSGL8.190e-4258.20VWFA domain-containing protein n=2 Tax=Absidia Tax... [more]
A0A507BXM2_9FUNG1.520e-4155.74VWFA domain-containing protein n=1 Tax=Synchytrium... [more]
A0A1X2H4C4_SYNRA2.080e-4155.74AAA domain-domain-containing protein n=1 Tax=Synce... [more]
A0A1Y2G664_9FUNG2.840e-4157.38AAA domain-domain-containing protein n=1 Tax=Lobos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86819contigM-pyrifera_M_contig86819:65..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score158.3
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog192875.XP_004349820.1
Preferred nameVWA8
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATPase activity
EggNOG OGs38FSP@33154,COG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.4704273-CDS-M-pyrifera_M_contig86819:64..921622816777.4704273-CDS-M-pyrifera_M_contig86819:64..92Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86819 65..92 +
1692278172.4815965-CDS-M-pyrifera_M_contig86819:64..921692278172.4815965-CDS-M-pyrifera_M_contig86819:64..92Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86819 65..92 +
1622816777.4829948-CDS-M-pyrifera_M_contig86819:148..4951622816777.4829948-CDS-M-pyrifera_M_contig86819:148..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86819 149..495 +
1692278172.496385-CDS-M-pyrifera_M_contig86819:148..4951692278172.496385-CDS-M-pyrifera_M_contig86819:148..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86819 149..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86819.20190.1prot_M-pyrifera_M_contig86819.20190.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86819 65..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86819.20190.1

>prot_M-pyrifera_M_contig86819.20190.1 ID=prot_M-pyrifera_M_contig86819.20190.1|Name=mRNA_M-pyrifera_M_contig86819.20190.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
RPGYPFLGNDFFAEMGDVFCSFAIENPDQESELQLLRSYAPTVSEEILRK
LTSSFQELRKMIREGVLLYPFSTRELVNIVRHLEANPGEAIASVLANTFD
FDVLDFELHDTLSEVFNRHGIPFHV
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mRNA from alignment at M-pyrifera_M_contig86819:65..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86819.20190.1 ID=mRNA_M-pyrifera_M_contig86819.20190.1|Name=mRNA_M-pyrifera_M_contig86819.20190.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=431bp|location=Sequence derived from alignment at M-pyrifera_M_contig86819:65..495+ (Macrocystis pyrifera P11B4 male)
CGCCCAGGCTACCCTTTCTTGGGCAACGGTGCGTTTTCTGCAGCGGAAGT AACCAGCAGCACCACAGGTCTAACGGTGCTACAGACTTCTTTGCAGAGAT GGGCGATGTGTTCTGCAGCTTTGCCATTGAGAACCCGGACCAAGAGTCCG AGCTACAACTGCTGAGGAGCTACGCCCCAACAGTGAGCGAGGAGATTCTC CGCAAGCTCACTTCCTCATTCCAGGAGCTGAGGAAGATGATAAGAGAGGG AGTTCTCCTCTATCCCTTCAGCACCAGAGAGCTTGTCAACATTGTGAGGC ACTTGGAGGCCAACCCTGGCGAGGCCATCGCAAGCGTTCTTGCCAATACC TTCGATTTCGATGTGCTGGATTTTGAGCTTCATGATACGCTGTCTGAGGT CTTCAACCGTCACGGCATTCCCTTCCACGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86819:65..495+

>mRNA_M-pyrifera_M_contig86819.20190.1 ID=mRNA_M-pyrifera_M_contig86819.20190.1|Name=mRNA_M-pyrifera_M_contig86819.20190.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig86819:65..495+ (Macrocystis pyrifera P11B4 male)
CGCCCAGGCTACCCTTTCTTGGGCAACGCGCCCAGGCTACCCTTTCTTGG
GCAACGACTTCTTTGCAGAGATGGGCGATGTGTTCTGCAGCTTTGCCATT
GAGAACCCGGACCAAGAGTCCGAGCTACAACTGCTGAGGAGCTACGCCCC
AACAGTGAGCGAGGAGATTCTCCGCAAGCTCACTTCCTCATTCCAGGAGC
TGAGGAAGATGATAAGAGAGGGAGTTCTCCTCTATCCCTTCAGCACCAGA
GAGCTTGTCAACATTGTGAGGCACTTGGAGGCCAACCCTGGCGAGGCCAT
CGCAAGCGTTCTTGCCAATACCTTCGATTTCGATGTGCTGGATTTTGAGC
TTCATGATACGCTGTCTGAGGTCTTCAACCGTCACGGCATTCCCTTCCAC
GTTACTTCTTTGCAGAGATGGGCGATGTGTTCTGCAGCTTTGCCATTGAG
AACCCGGACCAAGAGTCCGAGCTACAACTGCTGAGGAGCTACGCCCCAAC
AGTGAGCGAGGAGATTCTCCGCAAGCTCACTTCCTCATTCCAGGAGCTGA
GGAAGATGATAAGAGAGGGAGTTCTCCTCTATCCCTTCAGCACCAGAGAG
CTTGTCAACATTGTGAGGCACTTGGAGGCCAACCCTGGCGAGGCCATCGC
AAGCGTTCTTGCCAATACCTTCGATTTCGATGTGCTGGATTTTGAGCTTC
ATGATACGCTGTCTGAGGTCTTCAACCGTCACGGCATTCCCTTCCACGTT
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