mRNA_M-pyrifera_M_contig8680.20186.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 165 bits (417), Expect = 1.300e-39 Identity = 103/201 (51.24%), Postives = 125/201 (62.19%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLIPSVKIAXXXXXXXXXXXXXXXXXXXXLAGMALFEVFCEVHSIT--STVRSDSTDTSSATNHAGSSGGMDRGRSXXXXXXXXXXXXXXXXXXXXXSGYKNSSPEEPNTDHNPSSSELFEFV 603 +AYRPSRYY+EVIECARRLLLTGCLVFILPNSAGQ+GVACVL+VA+V LF+TLRPFAD ND+R Y+LG+I+IFLSMFVSL+P ++IA L MA + F EV SI S R DS DTSS N G+ GG R RS SGYKN SPE+ + +P+ + ++F Sbjct: 1475 QAYRPSRYYYEVIECARRLLLTGCLVFILPNSAGQAGVACVLSVATVALFITLRPFADSNDDRLYILGAILIFLSMFVSLVPKIEIADGDDQSETVVSWLLIVLSLTLWLMAFMQCFLEVRSINAASGSRWDSGDTSSIANLMGN-GGFSR-RSGGGAGEYKSDGTS--------SGYKNFSPEDHHNTGHPA--DFYDFT 1663
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 157 bits (398), Expect = 3.790e-37 Identity = 115/201 (57.21%), Postives = 139/201 (69.15%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLIPSVKIAXXXXXXXXXXXXXXXXXXXXLAGMALFEVFCEVHSI--TSTVRSDSTDTSSATNHAGSSGGMDRGRSXXXXXXXXXXXXXXXXXXXXXSGYKNSSPEEPNTDHNPSSSELFEFV 603 +AYRPSRYY+EVIECARRLLLTGCLVFILPNSAGQ+GVACVL+VA+V LF+TLRPFAD ND+ Y+LG+I+IFLSMFVSL+P ++IA XXXXXXXXXXXXXXXXXX + + F +V SI S R DS DTSS N G+ GG R S SGYKN SPE+ + +P+ + ++F Sbjct: 1770 QAYRPSRYYYEVIECARRLLLTGCLVFILPNSAGQAGVACVLSVATVALFITLRPFADSNDDHLYILGAILIFLSMFVSLVPKLEIADGXXXXXXXXXXXXXXXXXXXXXXXVMQCFWKVRSIDAASGRRWDSGDTSSIANLMGN-GGFSRRSSGGAGEDKSDDTS---------SGYKNFSPEDDHNTGHPA--DFYDFT 1958
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI) HSP 1 Score: 117 bits (293), Expect = 2.690e-24 Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLIPSVKIA 267 +AYRP+ YY+EV+EC RRLLLTGCLVFILPNSAGQ+ VACVLAV +V +F + P++D +D R Y LG++ IFL+MF+ L+ V +A Sbjct: 162 RAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLVVRVDLA 248
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.850e-23 Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 +AYRP+ YY+EV+EC RRLLLTGCLVFILPNSAGQ+ VACVLAV +V +F + P++D +D R Y LG++ IFL+MF+ L+ Sbjct: 312 RAYRPAAYYYEVLECFRRLLLTGCLVFILPNSAGQAAVACVLAVLTVAVFAFVSPYSDPDDHRAYTLGALAIFLTMFMGLV 392
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A835YUM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM0_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.230e-15 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 13 YRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 Y+ + Y++E+IECARRLLL+G LVFI P + QS VAC LA+ ++ ++ L P D D R YVLGSIIIF SMF +L+ Sbjct: 1131 YKKTVYFWELIECARRLLLSGFLVFIFPGTPAQSAVACTLALITIVVYGELAPHKDSTDHRVYVLGSIIIFFSMFSALL 1209
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A835YXM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM1_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.430e-15 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 13 YRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 Y+ YY+EV+EC RRLLLTG L FILP GQS ACV A + ++++ +P ++ D Y LG IIFL+MF++L+ Sbjct: 89 YKGKTYYWEVVECGRRLLLTGILTFILPGEIGQSAYACVFAYFMLLVYLSSQPHMERTDRYLYTLGQTIIFLTMFIALL 167
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A835ZGU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGU5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 7.700e-15 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 K YR Y+EV+EC RRL+LTG LVFILP GQS ACV A AS+ +++ +P + D Y LG+ ++FLSMFV+L+ Sbjct: 16 KPYRREYAYWEVVECLRRLMLTGVLVFILPGDPGQSVYACVFAYASIMVYMRCQPHHRRLDGWLYALGATVLFLSMFVALV 96
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 2.000e-14 Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLIPSVKIA 267 K + P YY+EVIEC RR+LLTG L+FI P++A Q+ +AC+ A AS+ F LRP D D Y LG + IFLS F++L+ V A Sbjct: 878 KDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAA 964
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: A0A836CFN7_9STRA (Beta_helix domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFN7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.580e-14 Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 13 YRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 Y YY+EV+EC RRLLL C+VFILP S GQS ACV A S+ +++ P + D R YVLG+ I+FLS FV LI Sbjct: 844 YTRGMYYWEVVECGRRLLLASCVVFILPGSLGQSSYACVFAYFSIVVYLRCSPHVARIDGRLYVLGATILFLSYFVGLI 922
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 3.890e-14 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 7 KAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCLFVTLRPFADQNDERQYVLGSIIIFLSMFVSLI 249 K + P YY+EVIEC RR+LLTG L+FI P++ Q+ +AC+ A AS+ F LRP D D Y LG ++IFLS F++L+ Sbjct: 1424 KDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALL 1504 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8680.20186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8680.20186.1 >prot_M-pyrifera_M_contig8680.20186.1 ID=prot_M-pyrifera_M_contig8680.20186.1|Name=mRNA_M-pyrifera_M_contig8680.20186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=530bp LRKAYRPSRYYFEVIECARRLLLTGCLVFILPNSAGQSGVACVLAVASVCback to top mRNA from alignment at M-pyrifera_M_contig8680:7539..10731- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8680.20186.1 ID=mRNA_M-pyrifera_M_contig8680.20186.1|Name=mRNA_M-pyrifera_M_contig8680.20186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3193bp|location=Sequence derived from alignment at M-pyrifera_M_contig8680:7539..10731- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8680:7539..10731- >mRNA_M-pyrifera_M_contig8680.20186.1 ID=mRNA_M-pyrifera_M_contig8680.20186.1|Name=mRNA_M-pyrifera_M_contig8680.20186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3180bp|location=Sequence derived from alignment at M-pyrifera_M_contig8680:7539..10731- (Macrocystis pyrifera P11B4 male)back to top |