mRNA_M-pyrifera_M_contig86757.20180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86757.20180.1
Unique NamemRNA_M-pyrifera_M_contig86757.20180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86757.20180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86757contigM-pyrifera_M_contig86757:3..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.992622-CDS-M-pyrifera_M_contig86757:2..5811622816776.992622-CDS-M-pyrifera_M_contig86757:2..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86757 3..581 -
1692278172.1328895-CDS-M-pyrifera_M_contig86757:2..5811692278172.1328895-CDS-M-pyrifera_M_contig86757:2..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86757 3..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86757.20180.1prot_M-pyrifera_M_contig86757.20180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86757 3..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86757.20180.1

>prot_M-pyrifera_M_contig86757.20180.1 ID=prot_M-pyrifera_M_contig86757.20180.1|Name=mRNA_M-pyrifera_M_contig86757.20180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
PLRPIYLIAFEDLRPGTAAYGNTCAKLQRLANRHDTDLIMAEPSDGRVMR
YLSAFRIAWSCRRNGGIAYHRNFPFSPIAGLLSGTKHMVIELNGPPTDAT
TAYPQLAWLGGLYRRAYELFLKQSPLIVTATTGLADYARAVAPRAQVIIA
PAAAPELAERPAADTAQAVDKDPKQVVYFGTFAPWQGVELLLE
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mRNA from alignment at M-pyrifera_M_contig86757:3..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86757.20180.1 ID=mRNA_M-pyrifera_M_contig86757.20180.1|Name=mRNA_M-pyrifera_M_contig86757.20180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig86757:3..581- (Macrocystis pyrifera P11B4 male)
CCGCTGCGACCCATCTACCTCATCGCATTTGAGGACCTCCGCCCTGGCAC
GGCGGCGTACGGCAACACCTGCGCCAAGCTGCAACGACTGGCGAACCGCC
ACGACACCGACCTGATCATGGCCGAACCTTCCGACGGCCGGGTCATGCGC
TACCTGTCGGCCTTCCGGATCGCATGGTCGTGTCGGCGCAACGGCGGCAT
CGCCTACCACCGCAACTTCCCGTTCTCACCGATCGCCGGTCTGCTCAGCG
GCACGAAGCACATGGTGATCGAACTCAACGGCCCGCCGACCGATGCAACC
ACTGCCTATCCCCAGTTGGCGTGGCTGGGCGGTCTCTACCGGCGAGCGTA
CGAACTGTTCCTCAAGCAGTCGCCCCTCATCGTCACCGCCACGACCGGAC
TCGCCGACTATGCCCGGGCCGTCGCTCCTCGTGCACAGGTGATCATCGCA
CCCGCTGCCGCACCTGAACTCGCCGAACGGCCGGCAGCCGACACGGCTCA
GGCAGTCGACAAAGACCCGAAGCAGGTCGTGTACTTCGGCACGTTCGCCC
CATGGCAGGGAGTCGAGCTTCTTCTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86757:3..581-

>mRNA_M-pyrifera_M_contig86757.20180.1 ID=mRNA_M-pyrifera_M_contig86757.20180.1|Name=mRNA_M-pyrifera_M_contig86757.20180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig86757:3..581- (Macrocystis pyrifera P11B4 male)
CCGCTGCGACCCATCTACCTCATCGCATTTGAGGACCTCCGCCCTGGCAC
GGCGGCGTACGGCAACACCTGCGCCAAGCTGCAACGACTGGCGAACCGCC
ACGACACCGACCTGATCATGGCCGAACCTTCCGACGGCCGGGTCATGCGC
TACCTGTCGGCCTTCCGGATCGCATGGTCGTGTCGGCGCAACGGCGGCAT
CGCCTACCACCGCAACTTCCCGTTCTCACCGATCGCCGGTCTGCTCAGCG
GCACGAAGCACATGGTGATCGAACTCAACGGCCCGCCGACCGATGCAACC
ACTGCCTATCCCCAGTTGGCGTGGCTGGGCGGTCTCTACCGGCGAGCGTA
CGAACTGTTCCTCAAGCAGTCGCCCCTCATCGTCACCGCCACGACCGGAC
TCGCCGACTATGCCCGGGCCGTCGCTCCTCGTGCACAGGTGATCATCGCA
CCCGCTGCCGCACCTGAACTCGCCGAACGGCCGGCAGCCGACACGGCTCA
GGCAGTCGACAAAGACCCGAAGCAGGTCGTGTACTTCGGCACGTTCGCCC
CATGGCAGGGAGTCGAGCTTCTTCTCGAGCCGCTGCGACCCATCTACCTC
ATCGCATTTGAGGACCTCCGCCCTGGCACGGCGGCGTACGGCAACACCTG
CGCCAAGCTGCAACGACTGGCGAACCGCCACGACACCGACCTGATCATGG
CCGAACCTTCCGACGGCCGGGTCATGCGCTACCTGTCGGCCTTCCGGATC
GCATGGTCGTGTCGGCGCAACGGCGGCATCGCCTACCACCGCAACTTCCC
GTTCTCACCGATCGCCGGTCTGCTCAGCGGCACGAAGCACATGGTGATCG
AACTCAACGGCCCGCCGACCGATGCAACCACTGCCTATCCCCAGTTGGCG
TGGCTGGGCGGTCTCTACCGGCGAGCGTACGAACTGTTCCTCAAGCAGTC
GCCCCTCATCGTCACCGCCACGACCGGACTCGCCGACTATGCCCGGGCCG
TCGCTCCTCGTGCACAGGTGATCATCGCACCCGCTGCCGCACCTGAACTC
GCCGAACGGCCGGCAGCCGACACGGCTCAGGCAGTCGACAAAGACCCGAA
GCAGGTCGTGTACTTCGGCACGTTCGCCCCATGGCAGGGAGTCGAGCTTC
TTCTCGAG
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