mRNA_M-pyrifera_M_contig8673.20176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8673.20176.1
Unique NamemRNA_M-pyrifera_M_contig8673.20176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8673.20176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8673contigM-pyrifera_M_contig8673:307..1998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1323
Cds size1314
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8673.20176.1prot_M-pyrifera_M_contig8673.20176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8673 307..1989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.7209888-CDS-M-pyrifera_M_contig8673:306..5401622816776.7209888-CDS-M-pyrifera_M_contig8673:306..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 307..540 -
1692278171.9499667-CDS-M-pyrifera_M_contig8673:306..5401692278171.9499667-CDS-M-pyrifera_M_contig8673:306..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 307..540 -
1622816776.733809-CDS-M-pyrifera_M_contig8673:768..11521622816776.733809-CDS-M-pyrifera_M_contig8673:768..1152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 769..1152 -
1692278171.959862-CDS-M-pyrifera_M_contig8673:768..11521692278171.959862-CDS-M-pyrifera_M_contig8673:768..1152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 769..1152 -
1622816776.7476768-CDS-M-pyrifera_M_contig8673:1293..19891622816776.7476768-CDS-M-pyrifera_M_contig8673:1293..1989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 1294..1989 -
1692278171.9688005-CDS-M-pyrifera_M_contig8673:1293..19891692278171.9688005-CDS-M-pyrifera_M_contig8673:1293..1989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8673 1294..1989 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.7598052-UTR-M-pyrifera_M_contig8673:1989..19981622816776.7598052-UTR-M-pyrifera_M_contig8673:1989..1998Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8673 1990..1998 -
1692278171.9777017-UTR-M-pyrifera_M_contig8673:1989..19981692278171.9777017-UTR-M-pyrifera_M_contig8673:1989..1998Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8673 1990..1998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8673.20176.1

>prot_M-pyrifera_M_contig8673.20176.1 ID=prot_M-pyrifera_M_contig8673.20176.1|Name=mRNA_M-pyrifera_M_contig8673.20176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=438bp
MEQCDRWNGDLRSAPSKVPAAATVATSPSGFFEAYPGKESPVGRTSPATA
LANQFKTHKVTSRTAHVCSGSSDWRNPYGNTQQEIGANASNGSGLGGEEE
MGVSLGGDEGREAQAAYPPYHETSSQQSEKDLWSALKTSLLSRSEAHADP
PHDKIGIGRTEERRALNDDGRYVGNGNIRGNGEARGYGFLTEARDMEQLD
QERSAMDRTMRPHRIASARLLETSRNPPSPNKVKHPRTFSASATRPCTYQ
SELSSSVWTSSTGTLECTGVRAELVPRNGDGQSGFSEESVNLADHHAFPG
EAGTRQEDGAQQQARKVDSGRFQWVTNDEGVANFLQRPPSRQKEAFPTHL
ADTVPYPAFQAELSVTGDEAKQNIDVIRKNAVEQARPSSRHKPPGESLFL
EVSETRRQVPPAFSPSQGIAAPGPEPFSGLSAGILSTD
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mRNA from alignment at M-pyrifera_M_contig8673:307..1998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8673.20176.1 ID=mRNA_M-pyrifera_M_contig8673.20176.1|Name=mRNA_M-pyrifera_M_contig8673.20176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at M-pyrifera_M_contig8673:307..1998- (Macrocystis pyrifera P11B4 male)
CATGACGCCATGGAGCAGTGCGACCGTTGGAATGGCGACTTGCGATCGGC
GCCTTCGAAGGTTCCGGCGGCCGCAACCGTTGCAACATCGCCCTCGGGGT
TCTTCGAGGCCTACCCCGGTAAAGAGTCACCGGTTGGCCGGACATCGCCA
GCCACAGCCCTTGCCAACCAGTTCAAGACACACAAGGTAACTTCCCGAAC
AGCGCACGTTTGTTCTGGGTCGTCTGATTGGAGAAACCCTTACGGCAACA
CGCAACAAGAAATCGGAGCGAACGCTTCCAATGGGTCAGGGCTTGGTGGC
GAGGAGGAAATGGGTGTCTCCTTAGGTGGTGACGAGGGGAGGGAAGCACA
AGCAGCTTATCCGCCTTACCACGAAACGTCGAGTCAGCAAAGCGAAAAAG
ACCTGTGGTCGGCGCTCAAGACTTCATTGCTCTCGAGAAGTGAGGCACAC
GCAGACCCACCACATGATAAAATAGGAATAGGGAGAACAGAAGAAAGGCG
GGCGCTAAATGATGATGGTCGTTATGTTGGCAATGGCAACATACGGGGAA
ATGGCGAAGCTAGGGGCTATGGCTTTCTGACAGAAGCACGAGATATGGAG
CAGCTCGATCAAGAACGAAGTGCCATGGATCGGACGATGCGCCCACACCG
CATCGCCTCAGCTCGTCTCTTGGAGACGAGCCGGAATCCGCCATCACCTA
ACAAGGTAAGAGTAGGCACATCACGTTAGCTGTACACATCAATGGCGCGG
ACTGCCCATAGCACGTATTCTATACGTACGTAACCATAAACACTGCACCA
GATATGCTATTGAGTGACTTCGAAGACAATTCTGCATTTCGTACAGGTGA
AACACCCTCGAACATTCTCGGCCAGTGCTACGCGTCCCTGCACCTACCAA
AGCGAATTGAGCAGCAGCGTTTGGACAAGCTCTACGGGTACCCTGGAGTG
CACAGGCGTTAGAGCTGAGTTAGTGCCTCGAAACGGGGATGGGCAGTCCG
GATTCAGCGAGGAATCCGTCAATCTAGCTGATCATCATGCTTTCCCTGGT
GAGGCCGGGACCCGTCAGGAAGACGGGGCTCAACAGCAAGCGCGGAAGGT
AGATTCAGGTCGCTTTCAGTGGGTTACCAATGACGAGGGGGTGGCGAACT
TCTTGCAGAGGCCCCCATCGCGCCAGAAGGAGGCATTCCCCACTCATTTG
GCGGACACCGTCCCGTATCCCGCGTTTCAGGTATGTTGTTTTGTTTTGTC
GGACACGACCACGCTCTCGACCAAGATTCTGGTGTTTTGCATCGTTTGCT
TCGACGTTCGTTTACGGATAGCCCATGAACGAGTGCGCCAGCCAACCTTG
AACAGCTCTCCTTTGGAAGAGAAAGGGATCATTGCTGCGGTATCTACCAC
ACGACAACAGCGTACTTCGCGAAGTACTCCACATTCGTTTTTTTCGCAAC
ATGACTAGGCGGAGCTTTCGGTGACCGGCGATGAAGCCAAGCAGAATATC
GACGTAATCCGCAAGAATGCCGTGGAACAGGCCCGCCCGTCATCGCGTCA
CAAGCCTCCGGGGGAAAGCCTCTTCCTAGAGGTATCGGAGACAAGGCGAC
AGGTTCCACCCGCCTTCTCACCTTCTCAAGGCATTGCGGCGCCCGGTCCA
GAGCCCTTCAGCGGCCTTTCTGCAGGGATACTATCAACGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8673:307..1998-

>mRNA_M-pyrifera_M_contig8673.20176.1 ID=mRNA_M-pyrifera_M_contig8673.20176.1|Name=mRNA_M-pyrifera_M_contig8673.20176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2628bp|location=Sequence derived from alignment at M-pyrifera_M_contig8673:307..1998- (Macrocystis pyrifera P11B4 male)
ATGGAGCAGTGCGACCGTTGGAATGGCGACTTGCGATCGGCGCCTTCGAA
GGTTCCGGCGGCCGCAACCGTTGCAACATCGCCCTCGGGGTTCTTCGAGG
CCTACCCCGGTAAAGAGTCACCGGTTGGCCGGACATCGCCAGCCACAGCC
CTTGCCAACCAGTTCAAGACACACAAGGTAACTTCCCGAACAGCGCACGT
TTGTTCTGGGTCGTCTGATTGGAGAAACCCTTACGGCAACACGCAACAAG
AAATCGGAGCGAACGCTTCCAATGGGTCAGGGCTTGGTGGCGAGGAGGAA
ATGGGTGTCTCCTTAGGTGGTGACGAGGGGAGGGAAGCACAAGCAGCTTA
TCCGCCTTACCACGAAACGTCGAGTCAGCAAAGCGAAAAAGACCTGTGGT
CGGCGCTCAAGACTTCATTGCTCTCGAGAAGTGAGGCACACGCAGACCCA
CCACATGATAAAATAGGAATAGGGAGAACAGAAGAAAGGCGGGCGCTAAA
TGATGATGGTCGTTATGTTGGCAATGGCAACATACGGGGAAATGGCGAAG
CTAGGGGCTATGGCTTTCTGACAGAAGCACGAGATATGGAGCAGCTCGAT
CAAGAACGAAGTGCCATGGATCGGACGATGCGCCCACACCGCATCGCCTC
AGCTCGTCTCTTGGAGACGAGCCGGAATCCGCCATCACCTAACAAGATGG
AGCAGTGCGACCGTTGGAATGGCGACTTGCGATCGGCGCCTTCGAAGGTT
CCGGCGGCCGCAACCGTTGCAACATCGCCCTCGGGGTTCTTCGAGGCCTA
CCCCGGTAAAGAGTCACCGGTTGGCCGGACATCGCCAGCCACAGCCCTTG
CCAACCAGTTCAAGACACACAAGGTAACTTCCCGAACAGCGCACGTTTGT
TCTGGGTCGTCTGATTGGAGAAACCCTTACGGCAACACGCAACAAGAAAT
CGGAGCGAACGCTTCCAATGGGTCAGGGCTTGGTGGCGAGGAGGAAATGG
GTGTCTCCTTAGGTGGTGACGAGGGGAGGGAAGCACAAGCAGCTTATCCG
CCTTACCACGAAACGTCGAGTCAGCAAAGCGAAAAAGACCTGTGGTCGGC
GCTCAAGACTTCATTGCTCTCGAGAAGTGAGGCACACGCAGACCCACCAC
ATGATAAAATAGGAATAGGGAGAACAGAAGAAAGGCGGGCGCTAAATGAT
GATGGTCGTTATGTTGGCAATGGCAACATACGGGGAAATGGCGAAGCTAG
GGGCTATGGCTTTCTGACAGAAGCACGAGATATGGAGCAGCTCGATCAAG
AACGAAGTGCCATGGATCGGACGATGCGCCCACACCGCATCGCCTCAGCT
CGTCTCTTGGAGACGAGCCGGAATCCGCCATCACCTAACAAGGTGAAACA
CCCTCGAACATTCTCGGCCAGTGCTACGCGTCCCTGCACCTACCAAAGCG
AATTGAGCAGCAGCGTTTGGACAAGCTCTACGGGTACCCTGGAGTGCACA
GGCGTTAGAGCTGAGTTAGTGCCTCGAAACGGGGATGGGCAGTCCGGATT
CAGCGAGGAATCCGTCAATCTAGCTGATCATCATGCTTTCCCTGGTGAGG
CCGGGACCCGTCAGGAAGACGGGGCTCAACAGCAAGCGCGGAAGGTAGAT
TCAGGTCGCTTTCAGTGGGTTACCAATGACGAGGGGGTGGCGAACTTCTT
GCAGAGGCCCCCATCGCGCCAGAAGGAGGCATTCCCCACTCATTTGGCGG
ACACCGTCCCGTATCCCGCGTTTCAGGTGAAACACCCTCGAACATTCTCG
GCCAGTGCTACGCGTCCCTGCACCTACCAAAGCGAATTGAGCAGCAGCGT
TTGGACAAGCTCTACGGGTACCCTGGAGTGCACAGGCGTTAGAGCTGAGT
TAGTGCCTCGAAACGGGGATGGGCAGTCCGGATTCAGCGAGGAATCCGTC
AATCTAGCTGATCATCATGCTTTCCCTGGTGAGGCCGGGACCCGTCAGGA
AGACGGGGCTCAACAGCAAGCGCGGAAGGTAGATTCAGGTCGCTTTCAGT
GGGTTACCAATGACGAGGGGGTGGCGAACTTCTTGCAGAGGCCCCCATCG
CGCCAGAAGGAGGCATTCCCCACTCATTTGGCGGACACCGTCCCGTATCC
CGCGTTTCAGGCGGAGCTTTCGGTGACCGGCGATGAAGCCAAGCAGAATA
TCGACGTAATCCGCAAGAATGCCGTGGAACAGGCCCGCCCGTCATCGCGT
CACAAGCCTCCGGGGGAAAGCCTCTTCCTAGAGGTATCGGAGACAAGGCG
ACAGGTTCCACCCGCCTTCTCACCTTCTCAAGGCATTGCGGCGCCCGGTC
CAGAGCCCTTCAGCGGCCTTTCTGCAGGGATACTATCAACGGACGCGGAG
CTTTCGGTGACCGGCGATGAAGCCAAGCAGAATATCGACGTAATCCGCAA
GAATGCCGTGGAACAGGCCCGCCCGTCATCGCGTCACAAGCCTCCGGGGG
AAAGCCTCTTCCTAGAGGTATCGGAGACAAGGCGACAGGTTCCACCCGCC
TTCTCACCTTCTCAAGGCATTGCGGCGCCCGGTCCAGAGCCCTTCAGCGG
CCTTTCTGCAGGGATACTATCAACGGAC
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