mRNA_M-pyrifera_M_contig86694.20164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86694.20164.1
Unique NamemRNA_M-pyrifera_M_contig86694.20164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A433PWA1_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PWA1_9FUNG)

HSP 1 Score: 129 bits (323), Expect = 1.320e-30
Identity = 80/233 (34.33%), Postives = 131/233 (56.22%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYVEPKGN----NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSH--DGRLDQNSLYGKQGGKKVQEIKSWIRSTGISKLPRA-------PTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLGG 675
            VA++L ++  T+S+LTAS++V  + +    N+GL +KF  K QKV GY+ K +    W ++ KA+ +L+EY+ +FPE FA L+K    D    ++    +Q   K+QEIK+W+++TG+  L R        P  Y    V +I +  G  ++ +  R +  R     A          + ++   LGDRVI+V+  G  P GA+GT+VG +++   + V+ DS F+GGT+LGG
Sbjct:  609 VAKRLQIAAFTLSKLTASLHVASRKDDQHINLGLNLKFEAKRQKVLGYSRKTKDG-VWEYSEKAVALLQEYKTKFPEFFAGLEKKMRADFYHAEDFYPAEQANAKMQEIKAWLKTTGVHDLERTALDADQLPKDY----VARIESAAGDFNDGIIYRTIILRNTPRQALLKPAHAPTRLQNQKFQLGDRVIFVQDSGGMPTGAKGTVVGIEEQT--IDVVLDSTFMGGTTLGG 834          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A507ELZ8_9FUNG (5'-3' exoribonuclease 1 n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ELZ8_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 2.030e-30
Identity = 78/233 (33.48%), Postives = 128/233 (54.94%), Query Frame = 1
Query:   13 EVARKLHVSTKTVSQLTASVYVEPKGN----NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQK-SHDGRLDQNSLYGKQ-GGKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVT-------ATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            +VA++L +S+  +S++T+S++V  K +    N+GL +KF  K +KV GY+ K   S  W ++ +A+ ++ EY+ RFPE+F AL+K S +   +   +Y ++   KK+ EIK W++  G+    R        T   I  ++  VDEV   R   G+ + VT       A       +  ++ ++ DLGDRV+Y    G  P  A+GT+VG   E   + V+FD  F+GG+SLG
Sbjct:  924 QVAKQLGISSLALSKVTSSLHVISKKSDQRYNLGLNLKFESKKRKVLGYSRKT--SSGWEYSQRAVALIREYKDRFPELFVALEKRSRNDLYEDTEIYPEELASKKLNEIKEWLKEAGVKDFERVSLDTSALTKNVIKDIEERVDEVYK-RIGDGKIKAVTVKNVPRPAVLKPAHARHRLSHQVFDLGDRVMYAMDSGSVPLAAQGTVVGM--EGNFLDVVFDQSFMGGSSLG 1151          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A4Q4Y0J2_9PEZI (5'-3' exoribonuclease 1 n=4 Tax=Monosporascus TaxID=155415 RepID=A0A4Q4Y0J2_9PEZI)

HSP 1 Score: 125 bits (315), Expect = 1.710e-29
Identity = 81/235 (34.47%), Postives = 126/235 (53.62%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYVEPKGNNV----GLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGR-LDQNSLYGKQG--GKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNA------RNLAGRPERVTATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDK--ENGIVSVLFDSQFIGGTSLGG 675
            VA+ L +   T+S++T++ +V   G N+    GL +KF  + QKV GY+ K +    W F+  A+ +L EY Q+FP+ FAAL K+  G+ LD+  L+  Q     K++EI  W++S   SK  R P          +  LQ AVD +  A      R L G P   +A     + ++ ++ +   LGDR++YV A GK P  ++GT+VG  +     ++ VL D  F+ GT+LGG
Sbjct:  977 VAKDLGLHPLTLSKITSAFHVNTIGGNMRVNLGLNLKFDARKQKVLGYSRKSDTG--WEFSPAAIKLLVEYMQKFPDFFAALLKNPQGKELDETDLWPDQNVATAKIKEIGQWLKSIETSKFERVPLDAEQLDSDVVMELQRAVDAIKEANSKTHPRKLNGVPR--SALLQPKDAEQRLSSQKFRLGDRLVYVHAAGKVPIASKGTVVGISEIGSQHMLDVLCDDAFMNGTTLGG 1207          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A367KCB2_RHIAZ (Uncharacterized protein n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367KCB2_RHIAZ)

HSP 1 Score: 123 bits (309), Expect = 1.110e-28
Identity = 77/232 (33.19%), Postives = 122/232 (52.59%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYV-EPKGN--NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGRLDQNSLYG--KQGGKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEP------ITDELVDLGDRVIYVKAGGKAPFGARGTIVGS-DKENGIVSVLFDSQFIGGTSLGG 675
            VAR+L++S+ T+++LT+S+ V E  G   N+GL +KF  + +KV GY  K   +  W ++  A+ +++EY   FPE    L    D  +   S +G   +G K + ++K WI+   +  LPRAP S        +  ++ A  E     +   R + +    P   L  P      + ++   LGDRVIYV   G  P G +GT+VG  DK   ++ V+FD+ F+GGT+LGG
Sbjct: 1463 VARELNISSLTLAKLTSSLQVVERTGQKLNIGLNLKFESRGEKVPGYTRKNPSAGYWEYSTLAVQLIKEYTTTFPEFIEMLNNKKDNLMMDVSDFGWTNEGYKYLHKMKEWIKERKVHDLPRAPHSTEELQSDYVLMIEEAAKEYQQRYDKESRSKFIVKNTPRKNLLRPSDAPYKLINQSFALGDRVIYVTDTGAVPLGLKGTVVGVLDK---VIDVVFDATFLGGTTLGG 1691          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: UPI002007BA76 (exoribonuclease 1 n=2 Tax=Annulohypoxylon TaxID=326606 RepID=UPI002007BA76)

HSP 1 Score: 123 bits (308), Expect = 1.480e-28
Identity = 78/235 (33.19%), Postives = 124/235 (52.77%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYVEPKGN----NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGR-LDQNSLYGKQ--GGKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARN------LAGRPERVTATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDK--ENGIVSVLFDSQFIGGTSLGG 675
            VA+ L +    +S++T+S +V   G     N+GL +KF  + QKV GY+ K      W F+  A+ +L EY  RFP+ FAA+ K+  G  L +  L+        K++EI +W+++   SK  R P          +  LQ AVDE+    N      L G P   +A     + ++ ++ +  +LGDRV+YV+A GK P  +RGT+VG      + ++ +L D+ F+ GT+LGG
Sbjct:  976 VAKDLGLHPLVLSKITSSFFVHTIGGSMKVNLGLNLKFEARKQKVLGYSRKSNSG--WEFSPAAIQLLVEYMTRFPDFFAAIMKNPSGNELHETQLWPDSDVASAKIKEIGAWLKTVETSKFERVPLDAEQLDSDVVMLLQKAVDELKETTNKSDRRKLKGVPR--SALLNPKDAEQRLSSQRFNLGDRVVYVQASGKVPMASRGTVVGISTVGNHHMLDILCDNAFMNGTTLGG 1206          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A372R099_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372R099_9GLOM)

HSP 1 Score: 120 bits (302), Expect = 2.740e-28
Identity = 74/238 (31.09%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYVEPKGN-----------NVGLQIKFSGKNQKVSGYADKPE--GSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGR--LDQNSLYGKQGG-KKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEPIT---DELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            VA++L++S  T+S+LTAS++V  K N           N+GL +KF  K QKV GY  K +      W ++ KA+ +L EY+++FPE    L+  HD          Y K+    K+  IK W+++  +    + P          I  ++ A DE +    +     +  A + + +     T   ++  +LGDRV++VK  G  P  ++GTIVG +K N  + V+FD  F+GG++LG
Sbjct:  245 VAKRLNISGLTLSKLTASLHVICKSNSNEQKSTDQRVNLGLNLKFEAKKQKVLGYTRKAKIKDKDGWEYSEKAIQILAEYKEKFPEFIQGLENKHDKEEIYTAEDFYPKEEAVSKINAIKDWLKTVEVRDFEKVPLEAEQLDKEAIQEIEKAADEFLKNMVIDQEEFKKLARYQLLKPSHASTLLQNQKFNLGDRVVFVKDSGNVPIASKGTIVGIEKNN--IDVVFDCTFMGGSTLG 480          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A1Y2FXL5_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FXL5_9BASI)

HSP 1 Score: 116 bits (291), Expect = 8.380e-28
Identity = 72/222 (32.43%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   34 VSTKTVSQLTASVYVEPKGN--NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGRLDQNSLYGKQG-GKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEP------ITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            +S  T+S++T+S+ +       NVGL +KF  K+QKV GY+ K  G   W F+ KA+ ++ EYR +FPEI  AL          +  +G +   ++V+E+K WI   G+    + P          +  ++   D++   + LA   + V    P + L +P      + D+   LGDRVI V   G  P  A+G +VG   + G + V+FD QFIGG++LG
Sbjct:    1 MSGLTLSKITSSMMITNGDQKVNVGLNLKFEAKSQKVLGYSRK--GDSGWEFSNKAIELILEYRSKFPEIVDALDGRRGDLTRASDFFGPENCNERVKELKEWISKKGVRDFEKVPLYSEQLDKDAVVIIEKLADQLNGQKVLANLKQAVIKGIPRSALLKPAHSASRLRDQHFALGDRVITVTDAGSVPLSAKGVVVGI--QTGFIDVVFDVQFIGGSTLG 218          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A4P9YVJ4_9FUNG (Uncharacterized protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YVJ4_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 9.780e-28
Identity = 71/231 (30.74%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   19 ARKLHVSTKTVSQLTASVYVEPKGN-----NVGLQIKFSGKNQKVSGYADKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKS-HDGRLDQNSLYGKQ-GGKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEP------ITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            A+++ +S   +S++T++++V    N     N+GL IKFSGKNQKV GY+ K      W F+ KA+ +++EY+ RFP+  A L++  +D       ++  +   K+V+EIK+W+++    +  R            +  ++ A D ++ A    G         P   L +P      ++++   LGDRV+YV+  G  P  A+GT+VG  K+   + V+FD  F+ GT+LG
Sbjct:   10 AKRVQMSPLLLSKITSTLHVAMGNNEDERVNLGLSIKFSGKNQKVHGYSRKTVRG--WDFSEKAIQLIQEYKDRFPDFIAMLERDVNDDIYKARKIFPPETASKRVEEIKAWLKTLDCRQQERVSIDAEILGKDTVRLIEEATDRILGAS--PGYRSVTIQNIPRFALLKPSFAATRLSNQQFQLGDRVVYVQDSGNVPIAAQGTVVG--KQGTELDVVFDQTFMSGTTLG 234          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A2Z6Q956_9GLOM (5'-3' exoribonuclease 1 n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6Q956_9GLOM)

HSP 1 Score: 120 bits (300), Expect = 1.720e-27
Identity = 74/238 (31.09%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   16 VARKLHVSTKTVSQLTASVYVEPKGN-----------NVGLQIKFSGKNQKVSGYA--DKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGR--LDQNSLYGKQGG-KKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARNLAGRPERVTATFPVTELQEPIT---DELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            VA++L++S  T+S+LTAS++V  K N           N+GL +KF  K QKV GY    K +    W ++ KA+ +L EY+++FPE   AL+  HD          Y K+    K+  IK W+++  +    + P          I  ++ A +E++  ++     +   A   + +     T   ++  +LGDRV++VK  G  P  ++GTIVG +K N  + V+FD  F+GG++LG
Sbjct:  963 VAKRLNISGLTLSKLTASLHVICKSNSNEQKSTDQRINLGLNLKFEAKKQKVLGYTRKTKTKDKDGWEYSEKAIQILAEYKEKFPEFIQALENKHDKDEIYTAEDFYPKEEAVSKIHAIKDWLKTVEVRDFEKVPLEAEQLDKEAIQDIEEAANELLENKDTDQVEKEKLARHKLLKPSHASTLLQNQKFNLGDRVVFVKDSGNVPIASKGTIVGIEKNN--IDVVFDCTFMGGSTLG 1198          
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Match: A0A397SL48_9GLOM (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SL48_9GLOM)

HSP 1 Score: 119 bits (297), Expect = 4.120e-27
Identity = 79/245 (32.24%), Postives = 125/245 (51.02%), Query Frame = 1
Query:   13 EVARKLHVSTKTVSQLTASVYV----------EPKGN----NVGLQIKFSGKNQKVSGYADKP--EGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSH--DGRLDQNSLYGKQGG-KKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNAR------NLAGRPERVTATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIVGSDKENGIVSVLFDSQFIGGTSLG 672
            +VA KL +S  T+S+LTAS++V          + K N    N+GL +KF  K QKV GY  K   +    W ++ KA+ +LEEY+++FPE   AL+  H  D        Y K+    K+  IK W+R+  +    +            I  ++ A D+++N +          R + +  +   T LQ    ++   LGDRV++VK  G  P  ++GTIVG +K N  + V+FD+ F+GG++LG
Sbjct:  580 KVAPKLGISGLTLSKLTASLHVICKPAEHKSGDQKSNDQRINLGLNLKFESKKQKVLGYTRKTRIKDKDGWEYSEKAINLLEEYKKKFPEFIQALESKHSKDEIYTAEDFYPKEEAVSKINAIKDWLRTVEVRDFEKVSLEAEQLDKEAIKDIEKAADKLLNRQLEKKEIEKLARHQLLKPSHATTLLQ----NQKFSLGDRVVFVKDSGNVPIASKGTIVGIEKSN--IDVVFDTSFMGGSTLG 818          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86694.20164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433PWA1_9FUNG1.320e-3034.33Uncharacterized protein (Fragment) n=1 Tax=Jimgerd... [more]
A0A507ELZ8_9FUNG2.030e-3033.485'-3' exoribonuclease 1 n=1 Tax=Spizellomyces sp. ... [more]
A0A4Q4Y0J2_9PEZI1.710e-2934.475'-3' exoribonuclease 1 n=4 Tax=Monosporascus TaxI... [more]
A0A367KCB2_RHIAZ1.110e-2833.19Uncharacterized protein n=1 Tax=Rhizopus azygospor... [more]
UPI002007BA761.480e-2833.19exoribonuclease 1 n=2 Tax=Annulohypoxylon TaxID=32... [more]
A0A372R099_9GLOM2.740e-2831.09Uncharacterized protein n=1 Tax=Rhizophagus sp. MU... [more]
A0A1Y2FXL5_9BASI8.380e-2832.43Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
A0A4P9YVJ4_9FUNG9.780e-2830.74Uncharacterized protein n=1 Tax=Syncephalis pseudo... [more]
A0A2Z6Q956_9GLOM1.720e-2731.095'-3' exoribonuclease 1 n=2 Tax=Rhizophagus clarus... [more]
A0A397SL48_9GLOM4.120e-2732.24XRN 5'-3' exonuclease N-terminus-domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86694contigM-pyrifera_M_contig86694:127..822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score121.7
Seed ortholog evalue4.4e-25
Seed eggNOG ortholog33188.XP_002544396.1
Preferred nameexo2
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000287,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004534,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008409,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0032126,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035770,GO:0036464,GO:0042254,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045787,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050779,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051726,GO:0060255,GO:0060260,GO:0060261,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070651,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0090512,GO:0097159,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:0140098,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902680,GO:1902806,GO:1902808,GO:1903311,GO:1903313,GO:1903506,GO:1903508,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins
EggNOG OGs20C82@147545,38DKU@33154,3B074@33183,3NUZQ@4751,3QPG3@4890,COG5049@1,KOG2045@2759
COG Functional cat.DL
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons2
Model size678
Cds size678
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.145381-CDS-M-pyrifera_M_contig86694:126..6541622816776.145381-CDS-M-pyrifera_M_contig86694:126..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86694 127..654 +
1692278171.6240933-CDS-M-pyrifera_M_contig86694:126..6541692278171.6240933-CDS-M-pyrifera_M_contig86694:126..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86694 127..654 +
1622816776.1568675-CDS-M-pyrifera_M_contig86694:672..8221622816776.1568675-CDS-M-pyrifera_M_contig86694:672..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86694 673..822 +
1692278171.6381967-CDS-M-pyrifera_M_contig86694:672..8221692278171.6381967-CDS-M-pyrifera_M_contig86694:672..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86694 673..822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86694.20164.1prot_M-pyrifera_M_contig86694.20164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86694 127..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86694.20164.1

>prot_M-pyrifera_M_contig86694.20164.1 ID=prot_M-pyrifera_M_contig86694.20164.1|Name=mRNA_M-pyrifera_M_contig86694.20164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp
MSLQEVARKLHVSTKTVSQLTASVYVEPKGNNVGLQIKFSGKNQKVSGYA
DKPEGSHTWMFTAKALGVLEEYRQRFPEIFAALQKSHDGRLDQNSLYGKQ
GGKKVQEIKSWIRSTGISKLPRAPTSYHTFTVGQIGALQGAVDEVMNARN
LAGRPERVTATFPVTELQEPITDELVDLGDRVIYVKAGGKAPFGARGTIV
GSDKENGIVSVLFDSQFIGGTSLGGA
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mRNA from alignment at M-pyrifera_M_contig86694:127..822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86694.20164.1 ID=mRNA_M-pyrifera_M_contig86694.20164.1|Name=mRNA_M-pyrifera_M_contig86694.20164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig86694:127..822+ (Macrocystis pyrifera P11B4 male)
ATGAGCCTCCAGGAGGTGGCGCGCAAGCTGCACGTCTCCACCAAGACTGT GAGCCAGCTGACTGCCTCTGTCTACGTGGAGCCGAAGGGCAACAATGTCG GCCTTCAGATCAAATTCTCTGGCAAGAACCAGAAGGTTTCTGGCTACGCC GACAAGCCTGAGGGCTCGCACACGTGGATGTTCACTGCCAAGGCACTCGG TGTGCTGGAGGAGTATCGCCAGCGCTTCCCTGAGATCTTCGCTGCGCTGC AGAAGAGCCACGACGGCAGACTGGACCAGAACTCCCTCTACGGCAAGCAG GGCGGCAAGAAGGTCCAGGAAATCAAGTCCTGGATCAGGTCTACTGGCAT CTCCAAGCTGCCTCGTGCGCCCACCTCCTACCACACCTTCACGGTGGGCC AGATCGGTGCTCTCCAGGGAGCTGTCGACGAGGTGATGAATGCACGCAAC TTGGCAGGCAGGCCCGAGCGTGTCACGGCCACCTTCCCCGTCACGGAGCT CCAGGAGCCCATCACCGACGAGCTCGTCGTCACTCGCCAGCCCTAGGACC TCGGCGACCGCGTCATCTACGTCAAGGCCGGCGGCAAGGCCCCCTTCGGA GCACGAGGCACCATCGTCGGCTCGGACAAGGAGAACGGCATCGTCTCTGT GCTCTTCGACAGCCAGTTCATCGGTGGCACCAGCCTCGGAGGAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86694:127..822+

>mRNA_M-pyrifera_M_contig86694.20164.1 ID=mRNA_M-pyrifera_M_contig86694.20164.1|Name=mRNA_M-pyrifera_M_contig86694.20164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1356bp|location=Sequence derived from alignment at M-pyrifera_M_contig86694:127..822+ (Macrocystis pyrifera P11B4 male)
ATGAGCCTCCAGGAGGTGGCGCGCAAGCTGCACGTCTCCACCAAGACTGT
GAGCCAGCTGACTGCCTCTGTCTACGTGGAGCCGAAGGGCAACAATGTCG
GCCTTCAGATCAAATTCTCTGGCAAGAACCAGAAGGTTTCTGGCTACGCC
GACAAGCCTGAGGGCTCGCACACGTGGATGTTCACTGCCAAGGCACTCGG
TGTGCTGGAGGAGTATCGCCAGCGCTTCCCTGAGATCTTCGCTGCGCTGC
AGAAGAGCCACGACGGCAGACTGGACCAGAACTCCCTCTACGGCAAGCAG
GGCGGCAAGAAGGTCCAGGAAATCAAGTCCTGGATCAGGTCTACTGGCAT
CTCCAAGCTGCCTCGTGCGCCCACCTCCTACCACACCTTCACGGTGGGCC
AGATCGGTGCTCTCCAGGGAGCTGTCGACGAGGTGATGAATGCACGCAAC
TTGGCAGGCAGGCCCGAGCGTGTCACGGCCACCTTCCCCGTCACGGAGCT
CCAGGAGCCCATCACCGACGAGCTCGTCATGAGCCTCCAGGAGGTGGCGC
GCAAGCTGCACGTCTCCACCAAGACTGTGAGCCAGCTGACTGCCTCTGTC
TACGTGGAGCCGAAGGGCAACAATGTCGGCCTTCAGATCAAATTCTCTGG
CAAGAACCAGAAGGTTTCTGGCTACGCCGACAAGCCTGAGGGCTCGCACA
CGTGGATGTTCACTGCCAAGGCACTCGGTGTGCTGGAGGAGTATCGCCAG
CGCTTCCCTGAGATCTTCGCTGCGCTGCAGAAGAGCCACGACGGCAGACT
GGACCAGAACTCCCTCTACGGCAAGCAGGGCGGCAAGAAGGTCCAGGAAA
TCAAGTCCTGGATCAGGTCTACTGGCATCTCCAAGCTGCCTCGTGCGCCC
ACCTCCTACCACACCTTCACGGTGGGCCAGATCGGTGCTCTCCAGGGAGC
TGTCGACGAGGTGATGAATGCACGCAACTTGGCAGGCAGGCCCGAGCGTG
TCACGGCCACCTTCCCCGTCACGGAGCTCCAGGAGCCCATCACCGACGAG
CTCGTCGACCTCGGCGACCGCGTCATCTACGTCAAGGCCGGCGGCAAGGC
CCCCTTCGGAGCACGAGGCACCATCGTCGGCTCGGACAAGGAGAACGGCA
TCGTCTCTGTGCTCTTCGACAGCCAGTTCATCGGTGGCACCAGCCTCGGA
GGAGCGGACCTCGGCGACCGCGTCATCTACGTCAAGGCCGGCGGCAAGGC
CCCCTTCGGAGCACGAGGCACCATCGTCGGCTCGGACAAGGAGAACGGCA
TCGTCTCTGTGCTCTTCGACAGCCAGTTCATCGGTGGCACCAGCCTCGGA
GGAGCG
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