mRNA_M-pyrifera_M_contig86651.20158.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86651.20158.1
Unique NamemRNA_M-pyrifera_M_contig86651.20158.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86651.20158.1 vs. uniprot
Match: A0A2T9YT82_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YT82_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 4.650e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 MVAEKYKKCCPCCGKEVPETLKHIMLRCRRWKKGREEMLGSMIREANKLT 150
            ++++ YKK CPCC    PET++HI+L C RW   R E +   I    KLT
Sbjct:  601 LISKLYKKKCPCCNANFPETIEHILLGCSRWAAIRAETIRKFIPRLYKLT 650
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86651.20158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2T9YT82_9FUNG4.650e-544.00Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86651contigM-pyrifera_M_contig86651:328..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.8211262-CDS-M-pyrifera_M_contig86651:327..5401622816775.8211262-CDS-M-pyrifera_M_contig86651:327..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86651 328..540 +
1692278171.4321501-CDS-M-pyrifera_M_contig86651:327..5401692278171.4321501-CDS-M-pyrifera_M_contig86651:327..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86651 328..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86651.20158.1prot_M-pyrifera_M_contig86651.20158.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86651 328..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86651.20158.1

>prot_M-pyrifera_M_contig86651.20158.1 ID=prot_M-pyrifera_M_contig86651.20158.1|Name=mRNA_M-pyrifera_M_contig86651.20158.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MVAEKYKKCCPCCGKEVPETLKHIMLRCRRWKKGREEMLGSMIREANKLT
SGMEVRRGRTKVALLLGGEYK
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mRNA from alignment at M-pyrifera_M_contig86651:328..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86651.20158.1 ID=mRNA_M-pyrifera_M_contig86651.20158.1|Name=mRNA_M-pyrifera_M_contig86651.20158.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig86651:328..540+ (Macrocystis pyrifera P11B4 male)
ATGGTAGCGGAGAAGTACAAGAAATGCTGCCCGTGCTGCGGGAAGGAGGT
GCCCGAGACGTTGAAGCACATCATGCTACGGTGCCGCAGGTGGAAGAAAG
GAAGGGAGGAGATGTTGGGATCGATGATTCGAGAAGCGAATAAACTAACG
TCGGGGATGGAAGTGCGGCGAGGTCGCACAAAGGTCGCCTTGCTCTTAGG
TGGAGAGTACAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86651:328..540+

>mRNA_M-pyrifera_M_contig86651.20158.1 ID=mRNA_M-pyrifera_M_contig86651.20158.1|Name=mRNA_M-pyrifera_M_contig86651.20158.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig86651:328..540+ (Macrocystis pyrifera P11B4 male)
ATGGTAGCGGAGAAGTACAAGAAATGCTGCCCGTGCTGCGGGAAGGAGGT
GCCCGAGACGTTGAAGCACATCATGCTACGGTGCCGCAGGTGGAAGAAAG
GAAGGGAGGAGATGTTGGGATCGATGATTCGAGAAGCGAATAAACTAACG
TCGGGGATGGAAGTGCGGCGAGGTCGCACAAAGGTCGCCTTGCTCTTAGG
TGGAGAGTACAAAATGGTAGCGGAGAAGTACAAGAAATGCTGCCCGTGCT
GCGGGAAGGAGGTGCCCGAGACGTTGAAGCACATCATGCTACGGTGCCGC
AGGTGGAAGAAAGGAAGGGAGGAGATGTTGGGATCGATGATTCGAGAAGC
GAATAAACTAACGTCGGGGATGGAAGTGCGGCGAGGTCGCACAAAGGTCG
CCTTGCTCTTAGGTGGAGAGTACAAA
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