mRNA_M-pyrifera_M_contig86622.20149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86622.20149.1
Unique NamemRNA_M-pyrifera_M_contig86622.20149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86622.20149.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.990e-27
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    4 AKRKVEDFYRLKGCDPGLLPPPSGGTGIAPSGNPALRGKMPAAPSAQGXXXXXXXXXXXXXVVKDGAWGGELRNLLKIAGCEKHLDRFRKDQLDGESLLLMERRDFAKMGVTEVRSLGLSDA 369
            AKR VE+FYR KGC P  LPPPS       +     R   P      G  XXXXXXXXXX VV+DGAWGGELR LL++AGCE HL+RFR+DQLDGE LL+M+RRDF +MGVTE   + + +A
Sbjct:  823 AKRLVEEFYRSKGCQPSALPPPSSAVAARKAEGARARPAQPVT----GGPXXXXXXXXXXVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNA 940
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BLAST of mRNA_M-pyrifera_M_contig86622.20149.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.850e-26
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:   10 RKVEDFYRLKGCDPGLLPPPSGGTGIAPSGNPALRGKMPAAPSAQGXXXXXXXXXXXXXVVKDGAWGGELRNLLKIAGCEKHLDRFRKDQLDGESLLLMERRDFAKMGVTEVRSLGLSDAWGGVEWGGV 396
            R  E+FYR KGC P  LPPPS     A     A     PA P   GXXXXXXXXXXXX VV+DGAWGGELR LL++AGCE HL+RFR+DQLDGE LL+M+RRDF +MGVT    + + +A  G   GGV
Sbjct:  166 RVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARA--RPAQP-VTGXXXXXXXXXXXXVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNALKGSGAGGV 291
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BLAST of mRNA_M-pyrifera_M_contig86622.20149.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.550e-9
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  208 GGELRNLLKIAGCEKHLDRFRKDQLDGESLLLMERRDFAKMGVTE 342
            GGEL  LL+ A CE HL+RF +DQLDGE LL MERRDF +MGVTE
Sbjct:  901 GGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTE 945
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BLAST of mRNA_M-pyrifera_M_contig86622.20149.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.420e-8
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  208 GGELRNLLKIAGCEKHLDRFRKDQLDGESLLLMERRDFAKMGVTE 342
            G EL  LL+ A CE HL+RF++DQLDGE LL MERR+F +MGVTE
Sbjct:  761 GVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTE 805
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86622.20149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX21_ECTSI2.990e-2758.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKP4_9PHAE2.850e-2658.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8V2_9PHAE1.550e-971.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FX18_ECTSI2.420e-866.67KH domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86622contigM-pyrifera_M_contig86622:32..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size480
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.4647484-CDS-M-pyrifera_M_contig86622:31..4211622816775.4647484-CDS-M-pyrifera_M_contig86622:31..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86622 32..421 -
1692278171.278673-CDS-M-pyrifera_M_contig86622:31..4211692278171.278673-CDS-M-pyrifera_M_contig86622:31..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86622 32..421 -
1622816775.4791775-CDS-M-pyrifera_M_contig86622:531..6211622816775.4791775-CDS-M-pyrifera_M_contig86622:531..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86622 532..621 -
1692278171.288453-CDS-M-pyrifera_M_contig86622:531..6211692278171.288453-CDS-M-pyrifera_M_contig86622:531..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86622 532..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86622.20149.1prot_M-pyrifera_M_contig86622.20149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86622 32..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86622.20149.1

>prot_M-pyrifera_M_contig86622.20149.1 ID=prot_M-pyrifera_M_contig86622.20149.1|Name=mRNA_M-pyrifera_M_contig86622.20149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MAKRKVEDFYRLKGCDPGLLPPPSGGTGIAPSGNPALRGKMPAAPSAQGG
GGGGGGGGGGGGVVKDGAWGGELRNLLKIAGCEKHLDRFRKDQLDGESLL
LMERRDFAKMGVTEVRSLGLSDAWGGVEWGGVGGAAGKRGGGGGGGGVAG
RACRRGVSA*
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mRNA from alignment at M-pyrifera_M_contig86622:32..621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86622.20149.1 ID=mRNA_M-pyrifera_M_contig86622.20149.1|Name=mRNA_M-pyrifera_M_contig86622.20149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=590bp|location=Sequence derived from alignment at M-pyrifera_M_contig86622:32..621- (Macrocystis pyrifera P11B4 male)
ATGGCCAAACGCAAGGTGGAAGATTTTTACCGCTTGAAGGGGTGTGACCC
CGGTCTCCTGCCCCCCCCCTCCGGCGGCACCGGCATTGCAGTCGGCCATT
GGTTTCCCACCGCCGCCCCTGCGCGGGGAGGCGGGGGGGGGGAGGCGGGG
GGGGGGGAGGGGCAGGGGGTATTGCAGTCGGCCGCGCGGGCGCCTCGGAG
CCCTCTGGAAACCCGGCGTTGCGGGGAAAGATGCCAGCAGCGCCTTCGGC
TCAAGGAGGTGGTGGCGGGGGAGGAGGTGGGGGTGGGGGTGGGGGAGTGG
TGAAGGACGGGGCGTGGGGGGGAGAGCTGCGCAACCTGCTCAAGATTGCC
GGCTGCGAGAAGCACTTGGATAGGTTCCGCAAGGACCAGCTGGATGGGGA
GTCTCTGCTGCTGATGGAGAGGAGAGACTTTGCCAAGATGGGCGTGACTG
AGGTGCGCAGCCTGGGTTTGTCGGATGCGTGGGGTGGCGTGGAGTGGGGT
GGGGTTGGGGGGGCGGCTGGTAAGCGGGGGGGGGGGGGGGGGGGGGGGGG
GGTGGCTGGTCGTGCGTGCCGTCGCGGTGTTTCTGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86622:32..621-

>mRNA_M-pyrifera_M_contig86622.20149.1 ID=mRNA_M-pyrifera_M_contig86622.20149.1|Name=mRNA_M-pyrifera_M_contig86622.20149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig86622:32..621- (Macrocystis pyrifera P11B4 male)
ATGGCCAAACGCAAGGTGGAAGATTTTTACCGCTTGAAGGGGTGTGACCC
CGGTCTCCTGCCCCCCCCCTCCGGCGGCACCGGCATTGCAATGGCCAAAC
GCAAGGTGGAAGATTTTTACCGCTTGAAGGGGTGTGACCCCGGTCTCCTG
CCCCCCCCCTCCGGCGGCACCGGCATTGCACCCTCTGGAAACCCGGCGTT
GCGGGGAAAGATGCCAGCAGCGCCTTCGGCTCAAGGAGGTGGTGGCGGGG
GAGGAGGTGGGGGTGGGGGTGGGGGAGTGGTGAAGGACGGGGCGTGGGGG
GGAGAGCTGCGCAACCTGCTCAAGATTGCCGGCTGCGAGAAGCACTTGGA
TAGGTTCCGCAAGGACCAGCTGGATGGGGAGTCTCTGCTGCTGATGGAGA
GGAGAGACTTTGCCAAGATGGGCGTGACTGAGGTGCGCAGCCTGGGTTTG
TCGGATGCGTGGGGTGGCGTGGAGTGGGGTGGGGTTGGGGGGGCGGCTGG
TAAGCGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGCTGGTCGTGCGTGCC
GTCGCGGTGTTTCTGCGTGACCCTCTGGAAACCCGGCGTTGCGGGGAAAG
ATGCCAGCAGCGCCTTCGGCTCAAGGAGGTGGTGGCGGGGGAGGAGGTGG
GGGTGGGGGTGGGGGAGTGGTGAAGGACGGGGCGTGGGGGGGAGAGCTGC
GCAACCTGCTCAAGATTGCCGGCTGCGAGAAGCACTTGGATAGGTTCCGC
AAGGACCAGCTGGATGGGGAGTCTCTGCTGCTGATGGAGAGGAGAGACTT
TGCCAAGATGGGCGTGACTGAGGTGCGCAGCCTGGGTTTGTCGGATGCGT
GGGGTGGCGTGGAGTGGGGTGGGGTTGGGGGGGCGGCTGGTAAGCGGGGG
GGGGGGGGGGGGGGGGGGGGGGTGGCTGGTCGTGCGTGCCGTCGCGGTGT
TTCTGCGTGA
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