mRNA_M-pyrifera_M_contig86530.20139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86530.20139.1
Unique NamemRNA_M-pyrifera_M_contig86530.20139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517PXK7_9PLAN (RNA polymerase principal sigma factor HrdB n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PXK7_9PLAN)

HSP 1 Score: 471 bits (1211), Expect = 8.660e-163
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI
Sbjct:  313 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 556          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A518IKE0_9PLAN (RNA polymerase sigma factor SigA n=16 Tax=Planctomycetaceae TaxID=126 RepID=A0A518IKE0_9PLAN)

HSP 1 Score: 460 bits (1184), Expect = 1.080e-158
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTREEEAYYFRKLN+LKY+A QIQE LDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPG NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGN+ELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI
Sbjct:  313 PGLPPYLASLYSIPLLTREEEAYYFRKLNYLKYRAFQIQENLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGNNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNEELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 556          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A836RB48_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RB48_9PLAN)

HSP 1 Score: 369 bits (947), Expect = 7.360e-123
Identity = 185/244 (75.82%), Postives = 220/244 (90.16%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTR+EE YYFRK+N+LKY+AA+++E++DP RPKA DMD++EKLLDE+T++KNFLIRSNLRLVVSIAKRHIRP  NFFEMVSDGNMSLIRAIEKFDY+KGNKFSTYASWAIMKN+ARSIPAE+  LDRFRTGNDE+F  S+D+R SQ+ EELIN++Q  +I  IL QLD REKDI+ YRYGL+   EPQTLEQVG RFGVTKERIRQ+E+RAL+KLR+I Q E++++PG+
Sbjct:  312 PGLPPYLASLYSIPLLTRDEEVYYFRKMNYLKYQAAKLREQVDPARPKAEDMDRLEKLLDEATEIKNFLIRSNLRLVVSIAKRHIRPNTNFFEMVSDGNMSLIRAIEKFDYSKGNKFSTYASWAIMKNFARSIPAEHTQLDRFRTGNDEIFQNSSDDRTSQFEEELINRQQRQLIQEILGQLDEREKDIITYRYGLDE-GEPQTLEQVGQRFGVTKERIRQIEARALRKLRKIAQEEKLDVPGV 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517Z5R6_9PLAN (RNA polymerase principal sigma factor HrdB n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z5R6_9PLAN)

HSP 1 Score: 362 bits (930), Expect = 2.710e-120
Identity = 179/244 (73.36%), Postives = 215/244 (88.11%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLY+IPLLTREEE YYFRK+N+LKY+AA++++ +D NRPKARD+DQ+E+ L  + ++KNFLIRSNLRLVVSIAKRH++P  NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAE+ +LDRFRTG DE+F  S D+R SQY +E +N +QH VIM+ILDQLD RE+ I+++RYGL    EPQTLEQVG +FGVTKERIRQLESRAL+KLR+I   E+++IPG+
Sbjct:  311 PGLPPYLASLYTIPLLTREEEVYYFRKMNYLKYRAAELRDSIDRNRPKARDLDQLEERLQGAVEIKNFLIRSNLRLVVSIAKRHMKPSSNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEHTLLDRFRTGTDEIFQASRDDRSSQYEDEAVNSRQHQVIMAILDQLDERERAIIMHRYGLEQGTEPQTLEQVGAQFGVTKERIRQLESRALQKLRKIAHEEKLDIPGV 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A3E0Q7H0_9BACT (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q7H0_9BACT)

HSP 1 Score: 361 bits (927), Expect = 7.680e-120
Identity = 177/244 (72.54%), Postives = 219/244 (89.75%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTREEEAYYFRK+N+ K+KA+++++K+D +RP+ RD+D++E+LL ++ +VKNFLIRSNLRLVVSIAKRH+ P  NFFEMVSDGNMSLIRAIEKFDYT+GNKFSTYA+WAIMKNYARSIPAEYKVLDRFRTGN+E+F  S D+R + Y EEL+N +QH +IMSIL+QLD RE+ I+++RYGL   +EP+TLEQVG +FGVTKERIRQLESRAL+KLR+I   E+++IPG+
Sbjct:  311 PGLPPYLASLYSIPLLTREEEAYYFRKMNYFKFKASRVRDKIDESRPRTRDLDKLEELLTKAVEVKNFLIRSNLRLVVSIAKRHMTPNTNFFEMVSDGNMSLIRAIEKFDYTRGNKFSTYATWAIMKNYARSIPAEYKVLDRFRTGNEEVFQSSHDDRGNPYAEELVNSRQHQMIMSILEQLDDRERSIIVHRYGLEQGSEPKTLEQVGTKFGVTKERIRQLESRALQKLRKIAHEEKLDIPGL 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A517QS22_9PLAN (RNA polymerase principal sigma factor HrdB n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QS22_9PLAN)

HSP 1 Score: 356 bits (913), Expect = 1.020e-117
Identity = 174/244 (71.31%), Postives = 218/244 (89.34%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLY++PLLTRE+E Y+FRK+N+LK+KAA++Q+K+DP  PK+R++DQ+E L++E+  VKNFLIRSNLRLVVSIAKRH++P  NFFEMVSDGNMSL+RAIEKFDYT+GNKFSTYA+WAIMKNYARSIPAE KVLDRFRTGN+E+FF S D R SQ+++E+ N +QH VIMSIL+ LD REK I+++RYGL   +EP+TLEQVG RFGVTKERIRQ+E+RA++K+R+I   E++EIPGI
Sbjct:  312 PGLPPYLASLYTVPLLTREQEGYWFRKMNYLKFKAAELQKKIDPQSPKSRELDQLEDLIEEAILVKNFLIRSNLRLVVSIAKRHMKPSVNFFEMVSDGNMSLMRAIEKFDYTQGNKFSTYATWAIMKNYARSIPAENKVLDRFRTGNEEVFFFSEDSRGSQFKDEITNSRQHEVIMSILEHLDDREKRIILHRYGLEKGSEPETLEQVGTRFGVTKERIRQIEARAMQKIRKIANEEKLEIPGI 555          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A257W6G2_9BACT (RNA polymerase subunit sigma-70 (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W6G2_9BACT)

HSP 1 Score: 351 bits (901), Expect = 3.080e-117
Identity = 177/244 (72.54%), Postives = 211/244 (86.48%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLY+IPLLTREEE YYFRK+NF K++AA+++ ++DP RP+A+DMDQ+E LLD +T++KNFLIRSNLRLVVSIAKRH+RP  +FFEMVSDGNMSLIRAIEKFD+TKG KFSTYASWAIMKNYARSIPAE   LDRFRTGNDELF  S+D R  Q+ EE  N+KQ  +IMSILD LD RE+DI+++RYGL+    PQTLEQVG R GVTKERIRQLE+RAL+K+R++ Q E +EIPG+
Sbjct:  210 PGLPPYLASLYAIPLLTREEEVYYFRKMNFFKFQAAEVRSRIDPARPRAKDMDQVEALLDRATEIKNFLIRSNLRLVVSIAKRHMRPTTSFFEMVSDGNMSLIRAIEKFDFTKGFKFSTYASWAIMKNYARSIPAETVRLDRFRTGNDELFLASSDPRTDQFLEERTNKKQRELIMSILDHLDPRERDIIVHRYGLSEGAAPQTLEQVGTRLGVTKERIRQLEARALRKMRKLAQDESLEIPGV 453          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: UPI001424387D (sigma-70 family RNA polymerase sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001424387D)

HSP 1 Score: 354 bits (909), Expect = 3.990e-117
Identity = 179/244 (73.36%), Postives = 213/244 (87.30%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTRE+E YYFRK+N+LK+KA  +++++D +RP+ ++MDQ+E LL ++T++KNFLIRSNLRLVVSIAKRHI+P  NFFEMVSDGNMSLIRAIEKFDY+KGNKFSTYASWAIMKNYARSIPA +   DRFRTG DELF QSTD+R +Q++EEL N++QHA IM IL+QLD REKDI+ YR+GL     P TLEQVG RFGVTKERIRQLE+RALKK R+I Q ER++IPGI
Sbjct:  312 PGLPPYLASLYSIPLLTREDEQYYFRKMNYLKFKARAVRDQIDMDRPRTKEMDQVEDLLGKATEIKNFLIRSNLRLVVSIAKRHIKPTSNFFEMVSDGNMSLIRAIEKFDYSKGNKFSTYASWAIMKNYARSIPAAHTQADRFRTGKDELFQQSTDDRSNQFQEELTNKRQHAAIMQILEQLDDREKDIIRYRFGLGQEG-PLTLEQVGSRFGVTKERIRQLEARALKKARKIAQQERLDIPGI 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A3B1DN84_9ZZZZ (RNA polymerase sigma factor RpoD n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DN84_9ZZZZ)

HSP 1 Score: 353 bits (907), Expect = 7.990e-117
Identity = 178/244 (72.95%), Postives = 213/244 (87.30%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLY+IPLLTREEEA+YFRK+NFLK +AA ++++LDP RPKA  MD++E LL+++  VKNFLIRSNLRLVVSIAK+HI+PGGNFFEMVSDGNMSLIRAIEKFDY +GNKFSTYASWAIMKN+AR+IP EY  LDRFRTG DE+F QSTD R + ++EEL+N+ QH  IM ILDQLD RE+DI+ +R+GL+   EP TLEQVG+ FGVTKERIRQ+ESRALKKLR+I   E+++IPGI
Sbjct:  311 PGLPPYLASLYAIPLLTREEEAHYFRKMNFLKCRAATLRDQLDPARPKASGMDEVENLLEDAIAVKNFLIRSNLRLVVSIAKKHIKPGGNFFEMVSDGNMSLIRAIEKFDYMQGNKFSTYASWAIMKNFARTIPKEYTRLDRFRTGKDEVFVQSTDVRANPFQEELVNRNQHQAIMDILDQLDERERDIIRFRFGLDYNQEPLTLEQVGNHFGVTKERIRQIESRALKKLRKIAVSEKLDIPGI 554          
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Match: A0A2D6SSW4_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SSW4_9PLAN)

HSP 1 Score: 349 bits (895), Expect = 5.300e-115
Identity = 172/244 (70.49%), Postives = 214/244 (87.70%), Query Frame = 1
Query:    1 PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKARDMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDELFFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARNEPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI 732
            PGLPPYLASLYSIPLLTRE+E YYFRK+N+L + AA++++K+D  RPKA  MD++E L+++S D+KNFLIRSNLRLVVSIAKRHI+P  NFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKN+AR+IPAE+  LDRFRTGNDE+F +S++ R SQ+ +E++NQ Q  ++M ILDQLD RE+DI++ R+GLN  +EPQTLEQVG +FGVTKERIRQ+E+RAL KLRRI   ++++IPG+
Sbjct:  312 PGLPPYLASLYSIPLLTREDEEYYFRKMNYLLHCAAKVRDKIDRTRPKAAQMDEMEDLIEKSLDIKNFLIRSNLRLVVSIAKRHIKPNMNFFEMVSDGNMSLIRAIEKFDYTKGNKFSTYASWAIMKNFARTIPAEHTRLDRFRTGNDEVFMRSSEHRGSQFEDEMVNQTQQQILMGILDQLDARERDIILCRFGLNRGSEPQTLEQVGGQFGVTKERIRQIEARALGKLRRIADEKKLDIPGV 555          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86530.20139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PXK7_9PLAN8.660e-163100.00RNA polymerase principal sigma factor HrdB n=3 Tax... [more]
A0A518IKE0_9PLAN1.080e-15897.54RNA polymerase sigma factor SigA n=16 Tax=Planctom... [more]
A0A836RB48_9PLAN7.360e-12375.82Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A517Z5R6_9PLAN2.710e-12073.36RNA polymerase principal sigma factor HrdB n=1 Tax... [more]
A0A3E0Q7H0_9BACT7.680e-12072.54RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A517QS22_9PLAN1.020e-11771.31RNA polymerase principal sigma factor HrdB n=1 Tax... [more]
A0A257W6G2_9BACT3.080e-11772.54RNA polymerase subunit sigma-70 (Fragment) n=1 Tax... [more]
UPI001424387D3.990e-11773.36sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A3B1DN84_9ZZZZ7.990e-11772.95RNA polymerase sigma factor RpoD n=1 Tax=hydrother... [more]
A0A2D6SSW4_9PLAN5.300e-11570.49RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86530contigM-pyrifera_M_contig86530:3..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score469.9
Seed ortholog evalue7.1e-130
Seed eggNOG ortholog344747.PM8797T_12111
KEGG koko:K03086,ko:K03087,ko:K03093
KEGG Pathwayko02026,ko05111,map02026,map05111
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM RNA polymerase sigma factor, sigma-70 family
EggNOG OGs2IY72@203682,COG0568@1,COG0568@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons1
Model size735
Cds size735
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.8446913-CDS-M-pyrifera_M_contig86530:2..7371622816774.8446913-CDS-M-pyrifera_M_contig86530:2..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86530 3..737 +
1692278170.900664-CDS-M-pyrifera_M_contig86530:2..7371692278170.900664-CDS-M-pyrifera_M_contig86530:2..737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86530 3..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86530.20139.1prot_M-pyrifera_M_contig86530.20139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86530 3..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86530.20139.1

>prot_M-pyrifera_M_contig86530.20139.1 ID=prot_M-pyrifera_M_contig86530.20139.1|Name=mRNA_M-pyrifera_M_contig86530.20139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
PGLPPYLASLYSIPLLTREEEAYYFRKLNFLKYKAAQIQEKLDPNRPKAR
DMDQIEKLLDESTDVKNFLIRSNLRLVVSIAKRHIRPGGNFFEMVSDGNM
SLIRAIEKFDYTKGNKFSTYASWAIMKNYARSIPAEYKVLDRFRTGNDEL
FFQSTDERESQYREELINQKQHAVIMSILDQLDGREKDILIYRYGLNARN
EPQTLEQVGDRFGVTKERIRQLESRALKKLRRITQVERVEIPGI*
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mRNA from alignment at M-pyrifera_M_contig86530:3..737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86530.20139.1 ID=mRNA_M-pyrifera_M_contig86530.20139.1|Name=mRNA_M-pyrifera_M_contig86530.20139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=735bp|location=Sequence derived from alignment at M-pyrifera_M_contig86530:3..737+ (Macrocystis pyrifera P11B4 male)
CCCGGGCTGCCTCCGTACCTGGCCAGCCTGTATTCCATTCCGCTGCTCAC GCGGGAAGAAGAGGCGTATTACTTCAGAAAATTGAACTTCCTGAAATACA AGGCAGCACAGATTCAGGAAAAACTGGATCCGAATCGTCCGAAAGCCAGG GACATGGATCAGATTGAGAAGCTGCTCGATGAGAGCACGGACGTGAAGAA CTTCCTGATCCGCAGTAACCTGCGACTGGTGGTTTCGATTGCCAAGCGGC ACATTCGTCCGGGCGGCAACTTCTTCGAAATGGTCAGTGACGGCAACATG TCTCTGATTCGTGCCATCGAGAAATTTGATTATACCAAAGGTAATAAATT CTCGACCTACGCCAGCTGGGCAATTATGAAAAACTACGCCCGGTCAATTC CTGCGGAATACAAGGTCCTCGACCGGTTCCGTACCGGGAACGACGAACTG TTCTTTCAGTCGACTGATGAACGGGAAAGTCAGTACCGGGAAGAGTTAAT TAACCAGAAGCAACATGCAGTCATCATGAGTATTCTGGACCAGCTGGATG GTCGGGAAAAGGATATTCTAATCTATCGTTATGGTTTGAATGCCCGCAAT GAACCTCAGACACTTGAACAGGTAGGCGATCGCTTCGGAGTCACGAAAGA ACGGATTCGTCAATTGGAATCCCGTGCTCTGAAAAAACTGCGACGGATTA CCCAGGTGGAGCGGGTGGAAATCCCGGGAATATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86530:3..737+

>mRNA_M-pyrifera_M_contig86530.20139.1 ID=mRNA_M-pyrifera_M_contig86530.20139.1|Name=mRNA_M-pyrifera_M_contig86530.20139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig86530:3..737+ (Macrocystis pyrifera P11B4 male)
CCCGGGCTGCCTCCGTACCTGGCCAGCCTGTATTCCATTCCGCTGCTCAC
GCGGGAAGAAGAGGCGTATTACTTCAGAAAATTGAACTTCCTGAAATACA
AGGCAGCACAGATTCAGGAAAAACTGGATCCGAATCGTCCGAAAGCCAGG
GACATGGATCAGATTGAGAAGCTGCTCGATGAGAGCACGGACGTGAAGAA
CTTCCTGATCCGCAGTAACCTGCGACTGGTGGTTTCGATTGCCAAGCGGC
ACATTCGTCCGGGCGGCAACTTCTTCGAAATGGTCAGTGACGGCAACATG
TCTCTGATTCGTGCCATCGAGAAATTTGATTATACCAAAGGTAATAAATT
CTCGACCTACGCCAGCTGGGCAATTATGAAAAACTACGCCCGGTCAATTC
CTGCGGAATACAAGGTCCTCGACCGGTTCCGTACCGGGAACGACGAACTG
TTCTTTCAGTCGACTGATGAACGGGAAAGTCAGTACCGGGAAGAGTTAAT
TAACCAGAAGCAACATGCAGTCATCATGAGTATTCTGGACCAGCTGGATG
GTCGGGAAAAGGATATTCTAATCTATCGTTATGGTTTGAATGCCCGCAAT
GAACCTCAGACACTTGAACAGGTAGGCGATCGCTTCGGAGTCACGAAAGA
ACGGATTCGTCAATTGGAATCCCGTGCTCTGAAAAAACTGCGACGGATTA
CCCAGGTGGAGCGGGTGGAAATCCCGGGAATATAACCCGGGCTGCCTCCG
TACCTGGCCAGCCTGTATTCCATTCCGCTGCTCACGCGGGAAGAAGAGGC
GTATTACTTCAGAAAATTGAACTTCCTGAAATACAAGGCAGCACAGATTC
AGGAAAAACTGGATCCGAATCGTCCGAAAGCCAGGGACATGGATCAGATT
GAGAAGCTGCTCGATGAGAGCACGGACGTGAAGAACTTCCTGATCCGCAG
TAACCTGCGACTGGTGGTTTCGATTGCCAAGCGGCACATTCGTCCGGGCG
GCAACTTCTTCGAAATGGTCAGTGACGGCAACATGTCTCTGATTCGTGCC
ATCGAGAAATTTGATTATACCAAAGGTAATAAATTCTCGACCTACGCCAG
CTGGGCAATTATGAAAAACTACGCCCGGTCAATTCCTGCGGAATACAAGG
TCCTCGACCGGTTCCGTACCGGGAACGACGAACTGTTCTTTCAGTCGACT
GATGAACGGGAAAGTCAGTACCGGGAAGAGTTAATTAACCAGAAGCAACA
TGCAGTCATCATGAGTATTCTGGACCAGCTGGATGGTCGGGAAAAGGATA
TTCTAATCTATCGTTATGGTTTGAATGCCCGCAATGAACCTCAGACACTT
GAACAGGTAGGCGATCGCTTCGGAGTCACGAAAGAACGGATTCGTCAATT
GGAATCCCGTGCTCTGAAAAAACTGCGACGGATTACCCAGGTGGAGCGGG
TGGAAATCCCGGGAATATAA
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