mRNA_M-pyrifera_M_contig86490.20130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86490.20130.1
Unique NamemRNA_M-pyrifera_M_contig86490.20130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: D8LTR5_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.480e-17
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 RSLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            RSL++RE N VCADCTAK+PTWASVN GVFLCTQCAGCHR
Sbjct:  151 RSLLEREDNIVCADCTAKLPTWASVNTGVFLCTQCAGCHR 190          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A6H5L6N3_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-16
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 RSLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            RSL++RE N VCADCTAK+PTWASVN GVFLCTQCAGCHR
Sbjct:  189 RSLLEREENIVCADCTAKLPTWASVNTGVFLCTQCAGCHR 228          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A7S2XCV9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XCV9_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 6.950e-11
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 SLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            +L+   GN  CADC A  PTWASVN+GVF+CT+CAG HR
Sbjct:   62 ALMKAPGNRHCADCNAAKPTWASVNLGVFICTKCAGVHR 100          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A7J6TLN1_PEROL (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6TLN1_PEROL)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 SLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            S++ R  N+VCADC A  P WASVN+GVF+CT CAG HR
Sbjct:   14 SILSRPENSVCADCNAPNPRWASVNLGVFICTNCAGIHR 52          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: UPI000C6EBEAF (stromal membrane-associated protein 2-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EBEAF)

HSP 1 Score: 60.5 bits (145), Expect = 1.930e-10
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    7 LVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            L+  +GN VC+DC  K P WAS N+G+FLCTQCAG HR
Sbjct:   48 LLKIDGNDVCSDCKRKDPEWASYNIGIFLCTQCAGIHR 85          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A2R7WLC3_ONCFA (Uncharacterized protein n=2 Tax=Pentatomomorpha TaxID=33357 RepID=A0A2R7WLC3_ONCFA)

HSP 1 Score: 62.8 bits (151), Expect = 2.180e-10
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    7 LVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            L+ R GN  CADC AK P WAS N+G+FLCTQCAG HR
Sbjct:   12 LLKRPGNDKCADCGAKGPEWASYNIGIFLCTQCAGIHR 49          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: UPI0006C9988B (arf-GAP with dual PH domain-containing protein 1-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9988B)

HSP 1 Score: 62.4 bits (150), Expect = 2.980e-10
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 LVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            L+ + GN VCADC AK P WAS N+GVF+CT+CAG HR
Sbjct:   12 LLKKPGNDVCADCEAKSPEWASYNIGVFVCTRCAGVHR 49          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A7S2XBG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XBG1_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 3.330e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 SLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            +L+   GN  CADC A  PTWASVN+GVF+CT+CAG HR
Sbjct:   62 ALMKAPGNRHCADCNAAKPTWASVNLGVFICTKCAGVHR 100          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A158NHU9_ATTCE (Uncharacterized protein n=86 Tax=Hymenoptera TaxID=7399 RepID=A0A158NHU9_ATTCE)

HSP 1 Score: 62.0 bits (149), Expect = 4.090e-10
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 LVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            L+ + GN VCADC AK P WAS N+G+F+CT+CAG HR
Sbjct:   12 LLKKSGNNVCADCGAKNPEWASYNIGIFVCTRCAGVHR 49          
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Match: A0A195AWG4_9HYME (Arf-GAP with dual PH domain-containing protein 1 n=10 Tax=Apocrita TaxID=7400 RepID=A0A195AWG4_9HYME)

HSP 1 Score: 62.0 bits (149), Expect = 4.120e-10
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 LVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR 120
            L+ + GN VCADC AK P WAS N+G+F+CT+CAG HR
Sbjct:   12 LLKKSGNNVCADCGAKNPEWASYNIGIFVCTRCAGVHR 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86490.20130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR5_ECTSI9.480e-1785.00Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L6N3_9PHAE1.290e-1685.00Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2XCV9_9EUKA6.950e-1164.10Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7J6TLN1_PEROL1.420e-1064.10Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
UPI000C6EBEAF1.930e-1063.16stromal membrane-associated protein 2-like n=1 Tax... [more]
A0A2R7WLC3_ONCFA2.180e-1068.42Uncharacterized protein n=2 Tax=Pentatomomorpha Ta... [more]
UPI0006C9988B2.980e-1065.79arf-GAP with dual PH domain-containing protein 1-l... [more]
A0A7S2XBG1_9EUKA3.330e-1064.10Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A158NHU9_ATTCE4.090e-1063.16Uncharacterized protein n=86 Tax=Hymenoptera TaxID... [more]
A0A195AWG4_9HYME4.120e-1063.16Arf-GAP with dual PH domain-containing protein 1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86490contigM-pyrifera_M_contig86490:586..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2e-13
Seed eggNOG ortholog2880.D8LTR5
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0703@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.491697-CDS-M-pyrifera_M_contig86490:585..7081622816774.491697-CDS-M-pyrifera_M_contig86490:585..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86490 586..708 -
1692278170.7498498-CDS-M-pyrifera_M_contig86490:585..7081692278170.7498498-CDS-M-pyrifera_M_contig86490:585..708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86490 586..708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86490.20130.1prot_M-pyrifera_M_contig86490.20130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86490 586..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86490.20130.1

>prot_M-pyrifera_M_contig86490.20130.1 ID=prot_M-pyrifera_M_contig86490.20130.1|Name=mRNA_M-pyrifera_M_contig86490.20130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
RSLVDREGNTVCADCTAKVPTWASVNVGVFLCTQCAGCHR*
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mRNA from alignment at M-pyrifera_M_contig86490:586..708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86490.20130.1 ID=mRNA_M-pyrifera_M_contig86490.20130.1|Name=mRNA_M-pyrifera_M_contig86490.20130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig86490:586..708- (Macrocystis pyrifera P11B4 male)
AGGTCCCTGGTGGACCGAGAGGGAAACACCGTTTGCGCCGATTGCACGGC AAAGGTCCCGACTTGGGCTAGCGTTAACGTGGGGGTGTTCCTTTGTACAC AGTGCGCGGGGTGTCACAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86490:586..708-

>mRNA_M-pyrifera_M_contig86490.20130.1 ID=mRNA_M-pyrifera_M_contig86490.20130.1|Name=mRNA_M-pyrifera_M_contig86490.20130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig86490:586..708- (Macrocystis pyrifera P11B4 male)
AGGTCCCTGGTGGACCGAGAGGGAAACACCGTTTGCGCCGATTGCACGGC
AAAGGTCCCGACTTGGGCTAGCGTTAACGTGGGGGTGTTCCTTTGTACAC
AGTGCGCGGGGTGTCACAGGTGAAGGTCCCTGGTGGACCGAGAGGGAAAC
ACCGTTTGCGCCGATTGCACGGCAAAGGTCCCGACTTGGGCTAGCGTTAA
CGTGGGGGTGTTCCTTTGTACACAGTGCGCGGGGTGTCACAGGTGA
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