mRNA_M-pyrifera_M_contig86445.20129.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86445.20129.1
Unique NamemRNA_M-pyrifera_M_contig86445.20129.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86445.20129.1 vs. uniprot
Match: UPI001601197F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601197F)

HSP 1 Score: 55.5 bits (132), Expect = 6.800e-6
Identity = 47/179 (26.26%), Postives = 89/179 (49.72%), Query Frame = 1 
Query:    1 LRSGTITELFGGPGRGKTAHCIAATAAVAVGVRDVRRSEGVGKRSVIFLRSSSIPIGDRLFSCLNRHLGDNDAAVGEAAGRVEEMGICGPLELLDVLRGLE--VRGKEKPW-----LLVVDSLASLLSPAMAGVAVGDGKKRVGKLGFSIVARVAALLRRLSGEFGISILVTNNETGGK 516
            + +G +TE+ G  G GKT  C++    VA  ++          ++V+++ ++    G +L   L+   G+ ++    A  R+    I  P +LLD+L+  +  +  +  P+     LL+VDS+A++LSP + G             G +I+  ++  L+ LS E  I++L+TNN   G+
Sbjct:   97 IYTGALTEVIGASGSGKTQICMSVAVHVASSLQ----------QNVLYMDTAGACSGHKLQDILHNSAGEREST---ALSRIGFRRIFDPWQLLDLLQKTKAAISKQTDPFYSKLKLLIVDSVAAVLSPTLGGQQTE---------GHAIMLNISRQLKVLSSEHSIAVLMTNNVVHGE 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86445.20129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001601197F6.800e-626.26DNA repair protein RAD51 homolog 4-like n=1 Tax=Br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86445contigM-pyrifera_M_contig86445:1..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog8081.XP_008426732.1
Preferred nameRAD51D
KEGG koko:K10871
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008092,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043015,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.RAD51 homolog D (S. cerevisiae)
EggNOG OGs38BWA@33154,3BEBD@33208,3D2WE@33213,47ZN3@7711,494F4@7742,4A20D@7898,COG0468@1,KOG1433@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.4419785-CDS-M-pyrifera_M_contig86445:0..3001622816774.4419785-CDS-M-pyrifera_M_contig86445:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86445 1..300 +
1692278170.725354-CDS-M-pyrifera_M_contig86445:0..3001692278170.725354-CDS-M-pyrifera_M_contig86445:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86445 1..300 +
1622816774.4539542-CDS-M-pyrifera_M_contig86445:411..6391622816774.4539542-CDS-M-pyrifera_M_contig86445:411..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86445 412..639 +
1692278170.737105-CDS-M-pyrifera_M_contig86445:411..6391692278170.737105-CDS-M-pyrifera_M_contig86445:411..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86445 412..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86445.20129.1prot_M-pyrifera_M_contig86445.20129.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86445 1..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86445.20129.1

>prot_M-pyrifera_M_contig86445.20129.1 ID=prot_M-pyrifera_M_contig86445.20129.1|Name=mRNA_M-pyrifera_M_contig86445.20129.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
LRSGTITELFGGPGRGKTAHCIAATAAVAVGVRDVRRSEGVGKRSVIFLR
SSSIPIGDRLFSCLNRHLGDNDAAVGEAAGRVEEMGICGPLELLDVLRGL
EVRGKEKPWLLVVDSLASLLSPAMAGVAVGDGKKRVGKLGFSIVARVAAL
LRRLSGEFGISILVTNNETGGKGESS
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mRNA from alignment at M-pyrifera_M_contig86445:1..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86445.20129.1 ID=mRNA_M-pyrifera_M_contig86445.20129.1|Name=mRNA_M-pyrifera_M_contig86445.20129.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=639bp|location=Sequence derived from alignment at M-pyrifera_M_contig86445:1..639+ (Macrocystis pyrifera P11B4 male)
TTACGTTCTGGCACGATTACTGAATTGTTTGGGGGTCCTGGGCGTGGAAA
AACAGCACACTGCATTGCAGCGACAGCAGCTGTGGCTGTGGGAGTGAGAG
ATGTGAGGAGAAGTGAGGGGGTTGGGAAGAGATCGGTGATATTTTTGAGA
AGCTCTTCCATTCCAATTGGAGACCGTCTTTTTTCGTGTTTGAATCGACA
TTTAGGTGACAATGACGCAGCAGTCGGGGAAGCAGCTGGAAGAGTGGAGG
AAATGGGCATATGTGGACCACTGGAGTTGTTAGATGTGTTGCGAGGATTA
GTGCGAGATTTGGAGTGGGTGGAGAGGAAGGGGAGTGTGAAGAGGATGTT
GTGGAGTGAAGAAGGAAGTGTTGGGGAGGTTGGGGAGGTTGGGGAGGAGG
GAGAGGTGGAGGAGGTGAGAGGAAAAGAGAAGCCATGGTTGTTGGTGGTG
GATAGTCTTGCATCACTCTTGAGCCCAGCCATGGCTGGTGTAGCTGTGGG
AGATGGGAAGAAGAGGGTGGGTAAACTAGGGTTTTCGATTGTGGCAAGAG
TCGCAGCTCTGCTTCGACGATTGAGCGGAGAGTTTGGAATCTCCATCCTT
GTCACAAACAATGAAACAGGCGGGAAAGGAGAAAGTAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86445:1..639+

>mRNA_M-pyrifera_M_contig86445.20129.1 ID=mRNA_M-pyrifera_M_contig86445.20129.1|Name=mRNA_M-pyrifera_M_contig86445.20129.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig86445:1..639+ (Macrocystis pyrifera P11B4 male)
TTACGTTCTGGCACGATTACTGAATTGTTTGGGGGTCCTGGGCGTGGAAA
AACAGCACACTGCATTGCAGCGACAGCAGCTGTGGCTGTGGGAGTGAGAG
ATGTGAGGAGAAGTGAGGGGGTTGGGAAGAGATCGGTGATATTTTTGAGA
AGCTCTTCCATTCCAATTGGAGACCGTCTTTTTTCGTGTTTGAATCGACA
TTTAGGTGACAATGACGCAGCAGTCGGGGAAGCAGCTGGAAGAGTGGAGG
AAATGGGCATATGTGGACCACTGGAGTTGTTAGATGTGTTGCGAGGATTA
TTACGTTCTGGCACGATTACTGAATTGTTTGGGGGTCCTGGGCGTGGAAA
AACAGCACACTGCATTGCAGCGACAGCAGCTGTGGCTGTGGGAGTGAGAG
ATGTGAGGAGAAGTGAGGGGGTTGGGAAGAGATCGGTGATATTTTTGAGA
AGCTCTTCCATTCCAATTGGAGACCGTCTTTTTTCGTGTTTGAATCGACA
TTTAGGTGACAATGACGCAGCAGTCGGGGAAGCAGCTGGAAGAGTGGAGG
AAATGGGCATATGTGGACCACTGGAGTTGTTAGATGTGTTGCGAGGATTA
GAGGTGAGAGGAAAAGAGAAGCCATGGTTGTTGGTGGTGGATAGTCTTGC
ATCACTCTTGAGCCCAGCCATGGCTGGTGTAGCTGTGGGAGATGGGAAGA
AGAGGGTGGGTAAACTAGGGTTTTCGATTGTGGCAAGAGTCGCAGCTCTG
CTTCGACGATTGAGCGGAGAGTTTGGAATCTCCATCCTTGTCACAAACAA
TGAAACAGGCGGGAAAGGAGAAAGTAGTGAGGTGAGAGGAAAAGAGAAGC
CATGGTTGTTGGTGGTGGATAGTCTTGCATCACTCTTGAGCCCAGCCATG
GCTGGTGTAGCTGTGGGAGATGGGAAGAAGAGGGTGGGTAAACTAGGGTT
TTCGATTGTGGCAAGAGTCGCAGCTCTGCTTCGACGATTGAGCGGAGAGT
TTGGAATCTCCATCCTTGTCACAAACAATGAAACAGGCGGGAAAGGAGAA
AGTAGT
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