mRNA_M-pyrifera_M_contig86442.20127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86442.20127.1
Unique NamemRNA_M-pyrifera_M_contig86442.20127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A5A8CP20_CAFRO (Chitin-binding type-2 domain-containing protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP20_CAFRO)

HSP 1 Score: 150 bits (378), Expect = 6.390e-38
Identity = 97/218 (44.50%), Postives = 133/218 (61.01%), Query Frame = 1
Query:   13 SDLTITSLTPSRGPTG--TAVRVSGTGFSSGSSLVCRFGLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGF--SAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEVGV-GEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSVV 651
            +D  + SL P+RGP G  + V V G+GF+ G +L CRFGL +  A +VS+ EV C  P    G V+V+VS NGVDF  P    F   ++ R+  L+P+ G V+GG+++ V G  F  S    C FG S  V G   +++ V C SP   +A SV VEV   G + ++D A FR+VP +S+SH+ PSS P  GGTLVT+HG+GFVD  +  C FGS+ V
Sbjct: 2782 ADEGVESLVPARGPAGGGSVVSVRGSGFAFGGALQCRFGLASVAAVWVSEGEVRCETPDVPAGRVEVQVSNNGVDFG-PGSAWFEFVSVARVAGLTPAVGSVAGGSVVRVAGASFENSTGLGCRFG-STLVAGRFVSASEVECVSPGRGTAGSVSVEVTTNGADFTEDAAQFRYVPAASVSHVTPSSAPARGGTLVTVHGSGFVDAASTSCRFGSASV 2997          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A5A8CPQ3_CAFRO (Chitin-binding type-2 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPQ3_CAFRO)

HSP 1 Score: 149 bits (377), Expect = 8.690e-38
Identity = 97/218 (44.50%), Postives = 132/218 (60.55%), Query Frame = 1
Query:   13 SDLTITSLTPSRGPTG--TAVRVSGTGFSSGSSLVCRFGLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGF--SAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEVGV-GEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSVV 651
            +D  + SL P+RGP G  + V V G+GF+ G +L CRFGL    A +VS+ EV C  P    G V+V+VS NGVDF  P    F   ++ R+  L+P+ G V+GG+++ V G  F  S    C FG S  V G   +++ V C SP   +A SV VEV   G + ++D A FR+VP +S+SH+ PSS P  GGTLVT+HG+GFVD  +  C FGS+ V
Sbjct: 2257 ADEGVESLVPARGPAGGGSVVSVRGSGFAFGGALQCRFGLAAVAAVWVSEGEVRCETPDVPAGRVEVQVSNNGVDFG-PGSAWFEFVSVARVAGLTPAVGSVAGGSVVRVAGASFENSTGLGCRFG-STLVAGRFVSASEVECVSPGRGTAGSVSVEVTTNGADFTEDAAQFRYVPAASVSHVTPSSAPARGGTLVTVHGSGFVDAASTSCRFGSASV 2472          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A5A8EE09_CAFRO (Chitin-binding type-2 domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EE09_CAFRO)

HSP 1 Score: 140 bits (352), Expect = 1.930e-34
Identity = 99/234 (42.31%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPT--GTAVRVSGTGFSS--------GSSLV----CRFGLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGF--SAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEVGV-GEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSVV 651
            F F+S   +  LTP+ G    G+ VRV+G  F +        GS+LV    CRFGL    A +VS+ EV C  P    G V+V+VS NGVDF  P    F   ++ R+  L+P+ G V+GG+++ V G  F  S    C FG S  V G   +++ V C SP   +A SV VEV   G + ++D A FR+VP +S+SH+ PSS P  GGTLVT+HG+GFVD  +  C FGS+ V
Sbjct: 2390 FEFVSVARVAGLTPAVGSVAGGSVVRVAGASFENSTGLGCRFGSTLVAGRFCRFGLAAVAAVWVSEGEVRCETPDVPAGRVEVQVSNNGVDFG-PGSAWFEFVSVARVAGLTPAVGSVAGGSVVRVAGASFENSTGLGCRFG-STLVAGRFVSASEVECVSPGRGTAGSVSVEVTTNGADFTEDAAQFRYVPAASVSHVTPSSAPARGGTLVTVHGSGFVDAASTSCRFGSASV 2621          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A7S2QV53_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV53_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.250e-28
Identity = 80/221 (36.20%), Postives = 116/221 (52.49%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPT--GTAVRVSGTGFSSGSSLVCRFGLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGF--SAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEVGV-GEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSV 648
            F++     + S+ P R     G AV ++G GF + +S+ C FG I  P +++S T + C  P+  +GDV + VS+NG DF++ S   FS + +  +TS+SP+ GP+ GGT + V G  F  S    C FG +  V     + T V C  P   S+ +V V V   G E     A F + P   +S + PS G I GGT++ + G GF D  AL C FG  V
Sbjct:  452 FSYFQSFAVLSVEPDRAGVNGGDAVLLTGYGFVNDASIKCSFGGIKVPGKYISSTSIECNAPSMSQGDVALEVSLNGEDFTTGSGISFSFTGVASVTSISPTFGPIGGGTSVTVTGSDFEFSKNLKCRFGAAAIVSAGYVSPTEVVCVVPPTASSGTVSVSVSNNGLEFDPSPANFDYKPAIVVSKVTPSVGSIAGGTIILVEGTGFEDSSALACAFGGDV 672          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A7S4J3J5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3J5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.750e-24
Identity = 85/219 (38.81%), Postives = 110/219 (50.23%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPT--GTAVRVSGTGFSSGSSLVCRFGLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGF--SAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTS-AESVGVEV-GVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFG 639
            F ++SD  ITS+ P  GP   GT V ++G+ F    SL+C FG      +FVS TE+ C+ P    GDV + VS NG DF   S  PF       I+S SP SG V GGT + V G  F  S    C FG S  V     NST V+C SP   S A S+ V   GV    S    ++ ++    +  I+P +G + GGT VT+ G GF     + C FG
Sbjct:    4 FKYVSDPIITSMNPEMGPVTGGTMVSLAGSNFLDNDSLMCVFGDARVEGRFVSSTEIECISPEHGAGDVLISVSTNGEDFIG-SRVPFVYYEEVEISSFSPESGVVLGGTPVVVRGSNFALSKSLSCRFG-SVAVAARYVNSTAVACYSPPGESGAVSLSVSRNGVDYAASSGSMLYIYMESLEVVDISPRTGSVSGGTAVTVSGRGFSSSMDIWCSFG 220          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A254NLA8_9BACL (Uncharacterized protein n=2 Tax=Saccharibacillus sp. O23 TaxID=2009338 RepID=A0A254NLA8_9BACL)

HSP 1 Score: 105 bits (261), Expect = 2.470e-22
Identity = 72/216 (33.33%), Postives = 113/216 (52.31%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPT--GTAVRVSGTGFSSGSSLVCRF---GLITTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGFSAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEVGVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCG 633
            FT+I+  TI S++P+ GP   GT + ++GTGF+S S+++      G+  T    VS T++  V P G  G   V V+  G   ++     F+    P I S+SP+SGP +GGT I + G GF+A +    GG+      V + T ++  +P+ T A +VGV              F ++   +I+ ++P+SGP  GGT +TI G GF  G  +  G
Sbjct:  592 FTYIAAPTIASVSPTSGPAAGGTTITITGTGFTSESTVIVGGSIGGVNATNVNVVSPTQITAVTPPGTAGAKSVSVTTAGGTATANGA--FTYIAAPTIASVSPTSGPAAGGTTITITGTGFTAGSTVTVGGNAATAITVDSPTQITATTPAGT-AGAVGVSXXXXXXXXXANGAFTYIAAPTIASVSPTSGPAAGGTTITITGTGFTAGSTVTVG 804          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A835ZA69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA69_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.760e-22
Identity = 89/231 (38.53%), Postives = 124/231 (53.68%), Query Frame = 1
Query:   34 LTPSRGPT--GTAVRVSGTGFSSGSSLVCRFGL------ITTPAQFVSDTEVVCVVPTGVEGD-VDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGFSAPAVCL--FGGSDEVVGEVSNSTHVSCRSPSWTS-----AESVGVEV-GVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSV--VVGRWVS 669
            L+P+ GP   GT+VRV G  F++ ++L CRFG       +  PA F S   VVC  P G  G  V V V+VNG +++  +   FS    P +T+++PSSGP SGG  + + G GF+A A     FG  D     VS S  + C +P   +     A SV V V GV    S D   + FV  +++  ++P++G  VGGT VT++GAGF D   L C FG+    V  R+VS
Sbjct: 2959 LSPASGPASGGTSVRVRGAHFAASAALRCRFGAAAAAAAMVVPAWFESPRAVVCSAPPGAAGSTVPVDVTVNGAEYTDAALL-FSYYEPPVVTAVAPSSGPASGGAAVAIRGSGFAAAAALTVRFGVVDMPAVYVSAS-ELHCAAPRAPADGGGGAVSVAVSVNGVNFSASSD-VTYTFVRRATVVELSPATGTAVGGTTVTVYGAGFEDTEQLACRFGAGAAPVRARFVS 3186          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A7S0YYM4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YYM4_9CRYP)

HSP 1 Score: 103 bits (256), Expect = 5.550e-22
Identity = 83/218 (38.07%), Postives = 119/218 (54.59%), Query Frame = 1
Query:   31 SLTPSRGPTGTA---VRVSGTGFSSGSSLVCRFGLI-TTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGT--LIDVFGDGFSAPAV-CLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEV--GVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSVVVG 657
            S+TPSRG +G     V V G+ F+ GS L CRFG+  +  A + S + V+C  P+   G V V VS NGVD+S+     +       + S+SPS GPVSGGT  L+ V G   +   V C+FG + EV     +    SC +PS  SA  V V V  G G  +   G  + +  ++++  + PS+G I GGT+V++ G  F  G ++ C FG+SVV G
Sbjct:   41 SVTPSRGTSGVEGQIVTVIGSDFAHGSDLSCRFGVNGSVSALYESSSLVMCSAPSRGAGAVRVDVSNNGVDWSATGGR-YEYEVTDGVWSVSPSRGPVSGGTPILVSVGGSAKAYSGVYCVFG-TTEVAATALSGGGYSCTAPSGVSAGGVSVRVVEGSGRRELSSGLTYEYYTDAAVVGLLPSTGMISGGTMVSVFGTSF-SGSSVECRFGTSVVRG 255          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.490e-22
Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPT--GTAVRVSGTGFS-----SGSSLVCRFG--LITTPAQFVSDTEVVCVVPTGVE-GDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGTLIDVFGDGFSA--PAVCLFGGSDEVV-GEVSNSTHVSCRSPSWTSAESVGVEVGV-GEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVC 630
            +T++  +TIT ++P  GP   GT VRVSG+GF      SG  L+CRFG  ++T     VS  + +CV P     G V ++VS+NGVD++S   T F  S    + S  P +GP SGGT++ V G  F      +C FG    +V G   +ST V+C SP      ++ + + V G++  + G  F+++ ES++  I PSSGP  GGT+V + G GFV+   L C
Sbjct: 2761 YTYLPPITITGVSPKVGPLSGGTVVRVSGSGFEDAAAGSGKKLLCRFGQSVVTAAVAGVSG-DALCVAPAYQSVGAVSLKVSINGVDYTSDGWT-FYYSPDISVESAWPRAGPESGGTVVTVTGMEFVDIHSIMCEFGSLGTLVPGRWMDSTTVTCVSPPHMPGAAI-LRLSVNGQQFIETGLAFQYLIESTVRAITPSSGPQQGGTVVEVDGTGFVNSTGLSC 2981          
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Match: A0A7S0Z255_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z255_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 2.410e-21
Identity = 83/228 (36.40%), Postives = 122/228 (53.51%), Query Frame = 1
Query:    1 FTFISDLTITSLTPSRGPTGTA---VRVSGTGFSSGSSLVCRFGLI-TTPAQFVSDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPSSGPVSGGT--LIDVFGDGFSAPAV-CLFGGSDEVVGEVSNSTHVSCRSPSWTSAESVGVEV--GVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGAGFVDGGALVCGFGSSVVVG 657
            F + +   + S+ PSRG +G     V V G+ F+ GS L CRFG+  +  A + S + V+C  P+   G V V VS NGVD+S+     +       + S+SPS GPVSGGT  L+ V G   +   V C+FG + EV     +    SC +PS  SA  V V V  G G  +   G  + +  ++++  + PS+G I GGT+V++ G  F  G ++ C FG+SVV G
Sbjct:  196 FVYGASARVISVMPSRGTSGVEGQIVTVIGSDFAHGSDLSCRFGVNGSVSALYESSSLVMCSAPSRGAGAVRVDVSNNGVDWSATGGR-YEYEVTDGVWSVSPSRGPVSGGTPILVSVGGSAKAYSGVYCVFG-TTEVAATALSGGGYSCTAPSGVSAGGVSVRVVEGSGRRELSSGLTYEYYTDAAVVGLLPSTGMISGGTMVSVFGTSF-SGSSVECRFGTSVVRG 420          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86442.20127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CP20_CAFRO6.390e-3844.50Chitin-binding type-2 domain-containing protein n=... [more]
A0A5A8CPQ3_CAFRO8.690e-3844.50Chitin-binding type-2 domain-containing protein n=... [more]
A0A5A8EE09_CAFRO1.930e-3442.31Chitin-binding type-2 domain-containing protein n=... [more]
A0A7S2QV53_9STRA1.250e-2836.20Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7S4J3J5_9STRA1.750e-2438.81Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A254NLA8_9BACL2.470e-2233.33Uncharacterized protein n=2 Tax=Saccharibacillus s... [more]
A0A835ZA69_9STRA3.760e-2238.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0YYM4_9CRYP5.550e-2238.07Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
D7FLK0_ECTSI9.490e-2237.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0Z255_9CRYP2.410e-2136.40Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86442contigM-pyrifera_M_contig86442:21..689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog44056.XP_009036609.1
KEGG koko:K06820
KEGG Pathwayko04360,map04360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04516
Exons1
Model size669
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.3737395-CDS-M-pyrifera_M_contig86442:20..6891622816774.3737395-CDS-M-pyrifera_M_contig86442:20..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86442 21..689 -
1692278170.6911201-CDS-M-pyrifera_M_contig86442:20..6891692278170.6911201-CDS-M-pyrifera_M_contig86442:20..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86442 21..689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86442.20127.1prot_M-pyrifera_M_contig86442.20127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86442 21..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86442.20127.1

>prot_M-pyrifera_M_contig86442.20127.1 ID=prot_M-pyrifera_M_contig86442.20127.1|Name=mRNA_M-pyrifera_M_contig86442.20127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=223bp
FTFISDLTITSLTPSRGPTGTAVRVSGTGFSSGSSLVCRFGLITTPAQFV
SDTEVVCVVPTGVEGDVDVRVSVNGVDFSSPSPTPFSLSTIPRITSLSPS
SGPVSGGTLIDVFGDGFSAPAVCLFGGSDEVVGEVSNSTHVSCRSPSWTS
AESVGVEVGVGEEQSQDGAVFRFVPESSISHIAPSSGPIVGGTLVTIHGA
GFVDGGALVCGFGSSVVVGRWVS
back to top

mRNA from alignment at M-pyrifera_M_contig86442:21..689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86442.20127.1 ID=mRNA_M-pyrifera_M_contig86442.20127.1|Name=mRNA_M-pyrifera_M_contig86442.20127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig86442:21..689- (Macrocystis pyrifera P11B4 male)
TTCACATTCATCTCAGACCTCACCATCACGTCCCTCACTCCAAGCCGTGG TCCGACTGGCACAGCAGTGCGTGTATCTGGGACTGGATTCTCTTCTGGAT CGTCACTGGTATGTCGATTTGGATTGATCACAACTCCAGCACAGTTTGTG TCCGACACAGAAGTTGTTTGTGTCGTTCCAACTGGTGTGGAAGGGGATGT TGATGTTCGTGTGTCTGTGAATGGTGTGGACTTTTCCTCACCTTCTCCAA CACCGTTCTCCCTCTCTACCATCCCTCGCATTACCTCCCTCAGTCCTTCA TCTGGACCTGTGAGTGGTGGTACGTTGATTGATGTGTTTGGAGATGGGTT TTCCGCTCCAGCTGTGTGTTTGTTTGGTGGATCTGATGAGGTTGTTGGTG AGGTCTCCAACTCCACTCATGTCTCATGTCGATCTCCATCATGGACTTCA GCCGAGAGTGTTGGTGTGGAGGTTGGTGTTGGCGAGGAGCAGTCTCAAGA TGGGGCTGTGTTCCGTTTCGTTCCCGAGTCTTCTATTTCTCACATTGCTC CATCATCTGGTCCGATTGTTGGTGGGACATTGGTGACGATTCATGGAGCG GGCTTTGTGGATGGTGGTGCGTTGGTGTGTGGCTTTGGTTCTAGTGTGGT GGTTGGTCGTTGGGTGTCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86442:21..689-

>mRNA_M-pyrifera_M_contig86442.20127.1 ID=mRNA_M-pyrifera_M_contig86442.20127.1|Name=mRNA_M-pyrifera_M_contig86442.20127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1338bp|location=Sequence derived from alignment at M-pyrifera_M_contig86442:21..689- (Macrocystis pyrifera P11B4 male)
TTCACATTCATCTCAGACCTCACCATCACGTCCCTCACTCCAAGCCGTGG
TCCGACTGGCACAGCAGTGCGTGTATCTGGGACTGGATTCTCTTCTGGAT
CGTCACTGGTATGTCGATTTGGATTGATCACAACTCCAGCACAGTTTGTG
TCCGACACAGAAGTTGTTTGTGTCGTTCCAACTGGTGTGGAAGGGGATGT
TGATGTTCGTGTGTCTGTGAATGGTGTGGACTTTTCCTCACCTTCTCCAA
CACCGTTCTCCCTCTCTACCATCCCTCGCATTACCTCCCTCAGTCCTTCA
TCTGGACCTGTGAGTGGTGGTACGTTGATTGATGTGTTTGGAGATGGGTT
TTCCGCTCCAGCTGTGTGTTTGTTTGGTGGATCTGATGAGGTTGTTGGTG
AGGTCTCCAACTCCACTCATGTCTCATGTCGATCTCCATCATGGACTTCA
GCCGAGAGTGTTGGTGTGGAGGTTGGTGTTGGCGAGGAGCAGTCTCAAGA
TGGGGCTGTGTTCCGTTTCGTTCCCGAGTCTTCTATTTCTCACATTGCTC
CATCATCTGGTCCGATTGTTGGTGGGACATTGGTGACGATTCATGGAGCG
GGCTTTGTGGATGGTGGTGCGTTGGTGTGTGGCTTTGGTTCTAGTGTGGT
GGTTGGTCGTTGGGTGTCTTTCACATTCATCTCAGACCTCACCATCACGT
CCCTCACTCCAAGCCGTGGTCCGACTGGCACAGCAGTGCGTGTATCTGGG
ACTGGATTCTCTTCTGGATCGTCACTGGTATGTCGATTTGGATTGATCAC
AACTCCAGCACAGTTTGTGTCCGACACAGAAGTTGTTTGTGTCGTTCCAA
CTGGTGTGGAAGGGGATGTTGATGTTCGTGTGTCTGTGAATGGTGTGGAC
TTTTCCTCACCTTCTCCAACACCGTTCTCCCTCTCTACCATCCCTCGCAT
TACCTCCCTCAGTCCTTCATCTGGACCTGTGAGTGGTGGTACGTTGATTG
ATGTGTTTGGAGATGGGTTTTCCGCTCCAGCTGTGTGTTTGTTTGGTGGA
TCTGATGAGGTTGTTGGTGAGGTCTCCAACTCCACTCATGTCTCATGTCG
ATCTCCATCATGGACTTCAGCCGAGAGTGTTGGTGTGGAGGTTGGTGTTG
GCGAGGAGCAGTCTCAAGATGGGGCTGTGTTCCGTTTCGTTCCCGAGTCT
TCTATTTCTCACATTGCTCCATCATCTGGTCCGATTGTTGGTGGGACATT
GGTGACGATTCATGGAGCGGGCTTTGTGGATGGTGGTGCGTTGGTGTGTG
GCTTTGGTTCTAGTGTGGTGGTTGGTCGTTGGGTGTCT
back to top