mRNA_M-pyrifera_M_contig86369.20114.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86369.20114.1
Unique NamemRNA_M-pyrifera_M_contig86369.20114.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: UPI00064495D2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064495D2)

HSP 1 Score: 120 bits (301), Expect = 5.100e-29
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   16 WKPLRRLVYFHIHTKTTTEDQDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRESGSF 378
            W PLRR +YF+I  + T + Q N+CAGC+   S G F+T RYCEY GKFFC+ CH+   ++IP RI+  WD   Y V+  +  FL  I   PLFD+ +INP LY +N  +R   +R    F
Sbjct: 1021 WAPLRRKLYFNIPVQLTIKHQGNMCAGCSRDLS-GYFTTSRYCEYSGKFFCTNCHNKTQWYIPARIITNWDFKQYPVANFSYAFLMDIARVPLFDIATINPRLYRNNQLLRMRNLRRQMYF 1140          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A8J1YBX9_OWEFU (Ofus.G241025 protein n=3 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YBX9_OWEFU)

HSP 1 Score: 114 bits (286), Expect = 4.600e-27
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHT----KTTTEDQDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIK 357
            RG   W P R  + F++H     K     Q+  CAGC      G     RYCEY GK+FC  CH NDT FIPGRILQ+WD T Y VS  + + LE ++ DPLF++    P LY+ +  + +++
Sbjct:  374 RGNMEWAPPRAQIIFNVHPPIKRKVVLGKQNFRCAGCGMKVEQGFIKRFRYCEYLGKYFCQCCHSNDTAFIPGRILQKWDFTKYSVSNFSRDLLERMFFDPLFNILDCGPGLYKKSRTLEQVR 496          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A7S4MMK6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMK6_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 2.160e-26
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   16 WKPLRRLVYFHIHTKTTTEDQDNICAGCAAPFSFGI-FSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRESGSF 378
            W+ +R  +   +  K   ++ +  C  C A    G+ FS+IRYC ++GK+FC+ CH+ND+  +P  ++Q+WD T +KVS  AL+FLE + D+PL+++T INP LY+    +++IKV     F
Sbjct:  113 WQVVRNQIPLQVMRKKPPKEGER-CPSCKAQLDLGVVFSSIRYCNFYGKYFCTNCHNNDSVVVPAFVVQKWDFTAHKVSICALQFLEKLLDEPLYNITQINPYLYDSISSLKQIKVLRQQLF 233          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: F1A452_DICPU (RUN domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A452_DICPU)

HSP 1 Score: 112 bits (281), Expect = 2.510e-26
Identity = 50/113 (44.25%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   19 KPLRRLVYFHIHTKTTTEDQDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIK 357
            KP +RL +F I T+ + ++QD  CAGC +  S  IF + R C+Y GK+FCS CHD   Y+IP RI+  WD   Y +++  LEFL+ I ++PL D++++NP+LY +N  + RI+
Sbjct:  905 KPRKRL-HFKIQTEYSLKEQDFKCAGCNSDIS-SIFKSSRLCDYSGKYFCSTCHDKSVYYIPSRIIHSWDFKKYPIAKANLEFLKEIEEEPLIDISTLNPSLYINNQTLLRIR 1015          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A8J1USV0_OWEFU (Ofus.G19674 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1USV0_OWEFU)

HSP 1 Score: 103 bits (257), Expect = 1.330e-25
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   28 RRLVYFHIHT----KTTTEDQDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIK 357
            R  + F++H     K     Q+  CAGC      G     RYCEY GK+FC  CH NDT FIPGRILQ+WD T Y VS  + + LE ++ DPLF++      LY+ +  + +++
Sbjct:    1 RAQIIFNVHPPIKRKVVLGKQNFRCAGCGMKVEQGFIKRFRYCEYLGKYFCQCCHSNDTAFIPGRILQKWDFTKYSVSNFSRDLLERMFFDPLFNILDCGQGLYKKSRTLEQVR 114          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A4W3JC49_CALMI (Rubicon like autophagy enhancer n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JC49_CALMI)

HSP 1 Score: 103 bits (258), Expect = 1.200e-24
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHTKTTTED----QDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRE 366
            RG   W P R  + F +H     E     Q+++CAGC  P        +RYCEY GK+FC  CH ND   IP  IL +WD + Y V   + + L++I++DPLF++  IN AL     ++R+  ++E
Sbjct:    1 RGTEDWAPPRFQILFFLHPPQKREAVVAAQNSMCAGCGTPIELKYIKKLRYCEYLGKYFCECCHRNDESPIPSHILTKWDFSKYPVCNFSKQLLQSIWNDPLFNIYCINKALLSKVKELRKSGIQE 126          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A7K4M022_9AVES (RUBCL protein (Fragment) n=3 Tax=Tinamidae TaxID=8803 RepID=A0A7K4M022_9AVES)

HSP 1 Score: 104 bits (260), Expect = 1.610e-23
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHTKTTTED----QDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRESGSFPL 384
            RG  GW P R  + F+IH     +     Q+  C GC  P        +RYC+Y GK+FC  CH     +IP RIL +WD   Y V   A   L++I+ +P+F+V+ IN ALY    ++ R++  +   F L
Sbjct:  451 RGSSGWAPPRSQIIFNIHPSVKRDAVVAAQNFTCVGCGTPIESKYIRRLRYCDYLGKYFCDCCHSYAQSYIPARILMKWDFKKYYVCNFAKHLLDSIWQNPIFNVSCINKALYTKTKEIDRVRETQEQLFHL 582          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A851NTR7_9GALL (RUBCL protein (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851NTR7_9GALL)

HSP 1 Score: 104 bits (259), Expect = 2.230e-23
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHTKTTTED----QDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRESGSFPL 384
            RG  GW P R  + F+IH     +     Q+  C GC  P        +RYC+Y GK+FC  CH      IP RIL +WD   Y V   +   L++I+  P+F+V+SIN ALY  + +V R++  +   F L
Sbjct:  509 RGSSGWSPPRSQIIFNIHPSVKRDAVVAAQNFTCVGCGTPIESKYIRRLRYCDYLGKYFCDCCHSYAQSAIPARILMKWDFKKYYVCNFSKRLLDSIWQQPIFNVSSINKALYTKSKEVDRVRETQEQLFHL 640          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A852DCZ1_PASAF (RUBIC protein (Fragment) n=1 Tax=Passerina amoena TaxID=142471 RepID=A0A852DCZ1_PASAF)

HSP 1 Score: 104 bits (259), Expect = 2.270e-23
Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHT----KTTTEDQDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKV 360
            RG   W P R  + F++H     K     Q+  CAGC           +RYCEY GK+FC  CH+N    IP RIL++WD + Y VS  + + L  I++DPLF+V +INPALY+    + ++++
Sbjct:  665 RGNLEWAPPRPQIIFNVHLAPARKVAVAKQNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQTVIPSRILRKWDFSKYYVSNFSKDLLSKIWNDPLFNVQAINPALYQKVKALNQVRL 788          
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Match: A0A8C3M8W2_GEOPR (DUF4206 domain-containing protein n=6 Tax=Neognathae TaxID=8825 RepID=A0A8C3M8W2_GEOPR)

HSP 1 Score: 101 bits (252), Expect = 3.270e-23
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 RGPPGWKPLRRLVYFHIHTKTTTED----QDNICAGCAAPFSFGIFSTIRYCEYFGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFDVTSINPALYEHNPDVRRIKVRESGSFPL 384
            RG  GW P R  + F+IH     +     Q+  C GC  P        +RYC+Y GK+FC  CH      IP RIL +WD   Y V   +   L++I+  P+F+V+SIN  LY  + ++ R++  +   F L
Sbjct:   79 RGSSGWSPPRSQIIFNIHPSVKRDAVVAAQNFTCVGCGTPIESKYIRRLRYCDYLGKYFCDCCHSYAQSSIPARILSKWDFKKYYVCNFSKHLLDSIWQQPIFNVSSINKTLYTKSKEMDRVREAQEQLFHL 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86369.20114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00064495D25.100e-2945.45hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J1YBX9_OWEFU4.600e-2741.46Ofus.G241025 protein n=3 Tax=Owenia fusiformis Tax... [more]
A0A7S4MMK6_9EUKA2.160e-2638.52Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
F1A452_DICPU2.510e-2644.25RUN domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A8J1USV0_OWEFU1.330e-2540.35Ofus.G19674 protein (Fragment) n=1 Tax=Owenia fusi... [more]
A0A4W3JC49_CALMI1.200e-2437.30Rubicon like autophagy enhancer n=1 Tax=Callorhinc... [more]
A0A7K4M022_9AVES1.610e-2335.61RUBCL protein (Fragment) n=3 Tax=Tinamidae TaxID=8... [more]
A0A851NTR7_9GALL2.230e-2336.36RUBCL protein (Fragment) n=1 Tax=Penelope pileata ... [more]
A0A852DCZ1_PASAF2.270e-2338.71RUBIC protein (Fragment) n=1 Tax=Passerina amoena ... [more]
A0A8C3M8W2_GEOPR3.270e-2334.85DUF4206 domain-containing protein n=6 Tax=Neognath... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86369contigM-pyrifera_M_contig86369:296..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog5786.XP_003294446.1
KEGG koko:K19330
KEGG Pathwayko04140,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DUF4206
EggNOG OGs3XCQD@554915,KOG1829@1,KOG1829@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86369.20114.1prot_M-pyrifera_M_contig86369.20114.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86369 296..848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.5548337-CDS-M-pyrifera_M_contig86369:295..4131622816773.5548337-CDS-M-pyrifera_M_contig86369:295..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 296..413 +
1692278170.147673-CDS-M-pyrifera_M_contig86369:295..4131692278170.147673-CDS-M-pyrifera_M_contig86369:295..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 296..413 +
1622816773.5680845-CDS-M-pyrifera_M_contig86369:512..6301622816773.5680845-CDS-M-pyrifera_M_contig86369:512..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 513..630 +
1692278170.1626601-CDS-M-pyrifera_M_contig86369:512..6301692278170.1626601-CDS-M-pyrifera_M_contig86369:512..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 513..630 +
1622816773.5784752-CDS-M-pyrifera_M_contig86369:685..8481622816773.5784752-CDS-M-pyrifera_M_contig86369:685..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 686..848 +
1692278170.1775477-CDS-M-pyrifera_M_contig86369:685..8481692278170.1775477-CDS-M-pyrifera_M_contig86369:685..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86369 686..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86369.20114.1

>prot_M-pyrifera_M_contig86369.20114.1 ID=prot_M-pyrifera_M_contig86369.20114.1|Name=mRNA_M-pyrifera_M_contig86369.20114.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
RGPPGWKPLRRLVYFHIHTKTTTEDQDNICAGCAAPFSFGIFSTIRYCEY
FGKFFCSRCHDNDTYFIPGRILQRWDLTHYKVSRKALEFLETIYDDPLFD
VTSINPALYEHNPDVRRIKVRESGSFPLSACD*
back to top

mRNA from alignment at M-pyrifera_M_contig86369:296..848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86369.20114.1 ID=mRNA_M-pyrifera_M_contig86369.20114.1|Name=mRNA_M-pyrifera_M_contig86369.20114.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=553bp|location=Sequence derived from alignment at M-pyrifera_M_contig86369:296..848+ (Macrocystis pyrifera P11B4 male)
CGTGGGCCTCCAGGCTGGAAACCACTGAGGCGATTGGTGTACTTCCACAT CCACACCAAAACAACGACAGAAGATCAGGACAATATCTGTGCTGGCTGCG CAGCCCCGTTTTCGTTTGGTAGGAAATTACAGCTGCGGGAGAGGGATAGA GAGACAGCGAGACTGAGAGCGAGAGAGAAAGAGAGAGGGAGCAACGAGCT GGTCTGACCGATCGCAGGAATCTTCAGCACCATTCGCTACTGCGAATACT TTGGCAAGTTCTTTTGTTCGCGATGCCACGACAACGACACTTACTTCATC CCTGGCCGCATCTTGCAGCGATGGGACCTCACGCAGTATGCCTCCATTAC CACAACCTTCTTCGTAGAGACGCTAACGACAGTGTGACAGCTACAAAGTG TCAAGGAAAGCGCTTGAGTTCTTGGAAACCATTTACGACGACCCCCTCTT TGACGTCACGAGCATCAACCCTGCCCTGTATGAGCATAACCCAGATGTGC GGAGGATCAAGGTGCGTGAAAGCGGTTCCTTTCCTCTTTCTGCTTGCGAT TGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86369:296..848+

>mRNA_M-pyrifera_M_contig86369.20114.1 ID=mRNA_M-pyrifera_M_contig86369.20114.1|Name=mRNA_M-pyrifera_M_contig86369.20114.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig86369:296..848+ (Macrocystis pyrifera P11B4 male)
CGTGGGCCTCCAGGCTGGAAACCACTGAGGCGATTGGTGTACTTCCACAT
CCACACCAAAACAACGACAGAAGATCAGGACAATATCTGTGCTGGCTGCG
CAGCCCCGTTTTCGTTTGCGTGGGCCTCCAGGCTGGAAACCACTGAGGCG
ATTGGTGTACTTCCACATCCACACCAAAACAACGACAGAAGATCAGGACA
ATATCTGTGCTGGCTGCGCAGCCCCGTTTTCGTTTGGAATCTTCAGCACC
ATTCGCTACTGCGAATACTTTGGCAAGTTCTTTTGTTCGCGATGCCACGA
CAACGACACTTACTTCATCCCTGGCCGCATCTTGCAGCGATGGGACCTCA
CGCAGAATCTTCAGCACCATTCGCTACTGCGAATACTTTGGCAAGTTCTT
TTGTTCGCGATGCCACGACAACGACACTTACTTCATCCCTGGCCGCATCT
TGCAGCGATGGGACCTCACGCACTACAAAGTGTCAAGGAAAGCGCTTGAG
TTCTTGGAAACCATTTACGACGACCCCCTCTTTGACGTCACGAGCATCAA
CCCTGCCCTGTATGAGCATAACCCAGATGTGCGGAGGATCAAGGTGCGTG
AAAGCGGTTCCTTTCCTCTTTCTGCTTGCGATTGACTACAAAGTGTCAAG
GAAAGCGCTTGAGTTCTTGGAAACCATTTACGACGACCCCCTCTTTGACG
TCACGAGCATCAACCCTGCCCTGTATGAGCATAACCCAGATGTGCGGAGG
ATCAAGGTGCGTGAAAGCGGTTCCTTTCCTCTTTCTGCTTGCGATTGA
back to top